CmUC05G093160.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC05G093160.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	CmU531Chr05: 13536719 .. 13539475 (+)
Sequence length	935
RNA-Seq Expression	CmUC05G093160.1
Synteny	CmUC05G093160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATATTTCCCATTCTTCTTCTTCTACTTAATTTCTCTCTATCTCTAAACGCAGTCGCTATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGGTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTTTCTATTTCATGTGATTGCTCCGTTTAATTTGGTTAGTTTTTAGCAAGTTTAAATGAATGCTTGTTTTTTTTGGCTGGATGGGGATCGTCTGAAATTTGGTGGAGAGTAATGGAAAGTTTTGGGAAAAAAAAAAAACAAACAATATTGTCGTTGCTTAGTTAATTGAGGGGCGGATTAATTGGTGAATTTGGTTCCTTGAAAGCTCGTTGTATTTGTAGAAACTGTGAAAAAAAGGTTATTGATTTTTTTTGTTCTTTATAAAGAAAGTACTTGAATTCTTTGAGATCCAATTGCTTACTGTGGCTATGTATTGTTCTTTATTTGTTTGATCGAGTAGTGTTATTTTCTCTATGAACAATGATAGAAATTCTGGTATAAACGAATTACTAATACTTTGTGAGTAACTTGGAAGGTATGTTCTAATGAGGATGTTGATGTTGATGTTGATTTTCATGAATCTCTAGAAGATTATGAAATTTGAAATGAACTTATGGAAGAAGATCAACTCTCACCTTAGATGATTGAGGCAACTTTAACCTTAAAGTGTTAATTTCATTAAATTGAGATTAAAATTTGAATAAATAATGAATTAACATCCCTTGTTGGCCGAGTTGCTATTTCCTCTAGGTTTCTGGTTATATCTATGTCTTCTTGTGATGCGAATTGGGATGTGACTAGTTTTTTGAATGCTCATTTTATTGTTTCCTTGCCTTGAGCATTTGTTTTTTTGTTTTGGTTGGGTTTTGATGTTTTATTGTTGGATTTGATATTGCTTTGGTTCTTAAACTTAGTGCCTGGATTTTGATGTCTCTTCACCAAGATTTGAATATAGTAGTTGGAACTTGATTTTGTTTTCTGAATTTTAAGTGATATTTTGCTGTTTTTGGGGCAATTTTCTAGTTTTATTTGTGAGATTTTAGTTTCATCAGTTATTTAAGTTTAGAATTCAATTTGATAAATTTATAGCTTTAAGGCTAATGTACATGTGGGGTTTTCTTTTCTTTTCTTTTTCCTTTCCCCTTCCTTTATCCATCCCTTAAGGGATGCTTTTTGCATGCTGTTTTGATAAACCTAGGTTTAGTTTGGATTTTTGTAATCTACGCTTAGAATTTGTAAGGAAATGAGTTGTAGAAATCTTGGTATTTGTAAAATGTGTTTTGTTCAAGTTCAACTATAAAAACGTGGTTTCATTTGTTTATATTTATGTAACCTGAGTTGTTGGCTTGTGGGATTAGCTAACTCTTAACCCGTGGAGAATTATAACTTGGATAAACAAGCTCACGTACTAAAGTTTAGGCATGCCTCTTTACTATCTTAACATTGAGCTACACAAATCTAACTTGTGCATTAAACATGTCATGATGATATCTTTTATATTATGCTATACAGTATCTAGAACAACTCTAAGAATATGTATTTTTTGAAAAAATATTTACTATAAAAAAACTTATGTGGTAATCATATTTTCCCCACTTAGTTTTACTTTATCGATATTCAGATTCTTAGAAATAATCTCCCTCTCTTTGATATCAATATCAAATACTGAAACTGACAGTACAACAGTGAAAATCTCTTTGTTCTCATTATTTTTACGAAGCACAATAAAATCAGTACTTGTATTTTGATTTTATAGTTCCTTTTTCTTTTACAAATGAAATGTTGAGCAAAATAGATTAATAAGGAAGGCTTCCTCTGACAAATTAAACATTCACGTTATTTTTTATTTTTTATTTATTATTATTATTATTATTATTATTTTTTTGTGTGTGTGCGTGTTATAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATATAAAAAGTTCCGAAATTTTTTGATAGTGGTCTTAGATTGTGACTATTGTTGAATACTACGGCTATTCAGATGTCCTTTTTCATTTATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTGTTGGTTGTGTAACCCATCTACAGTTCAAATTTTTCGTTGAAAATTTTGTCCATAGTGAATGTGCAAACCTGTTATTTTATGCATCTACCTGGGGAAGTTTTTTAGAAGTTTAAGGATAATACATTAACCATTTAAACTGTTTTGCTGTAATAGTTTG

mRNA sequence

GCATATTTCCCATTCTTCTTCTTCTACTTAATTTCTCTCTATCTCTAAACGCAGTCGCTATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATATAAAAAGTTCCGAAATTTTTTGATAGTGGTCTTAGATTGTGACTATTGTTGAATACTACGGCTATTCAGATGTCCTTTTTCATTTATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTGTTGGTTGTGTAACCCATCTACAGTTCAAATTTTTCGTTGAAAATTTTGTCCATAGTGAATGTGCAAACCTGTTATTTTATGCATCTACCTGGGGAAGTTTTTTAGAAGTTTAAGGATAATACATTAACCATTTAAACTGTTTTGCTGTAATAGTTTG

Coding sequence (CDS)

ATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Protein sequence

MMLSMAVQLQPNVNFCFNASYTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRRQNFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

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BLAST of CmUC05G093160.1 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 335.5 bits (859), Expect = 3.0e-88
Identity = 173/193 (89.64%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNVNFCFN S +TAQTATSKP QVP++VKQR+T++SCI NLHS+S  KLR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60

Query: 61  RQNFRTLEISAA--AAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QNFRTL+ISA+  AAEA EAA ESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 193

[Close]

BLAST of CmUC05G093160.1 vs. NCBI nr
Match: XP_004145640.2 (30S ribosomal protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 169/193 (87.56%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNVNFCFN S +TAQTA SKP ++P++V+QRTTA+SCI N H++ G++LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  RQNFRTLEISAAAA--EAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQNFRT EISA+AA  EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of CmUC05G093160.1 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 4.5e-84
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of CmUC05G093160.1 vs. NCBI nr
Match: KGN57759.2 (hypothetical protein Csa_011376 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 8.4e-83
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRRQNF 64
           MAVQLQPNVNFCFN S +TAQTA SKP ++P++V+QRTTA+SCI N H++ G++LRRQNF
Sbjct: 1   MAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNF 60

Query: 65  RTLEISAAAA--EAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 124
           RT EISA+AA  EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIWMEKN
Sbjct: 61  RTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 120

Query: 125 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 184
           IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL
Sbjct: 121 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 180

Query: 185 WQQGGGNLA 191
           WQQGGGNLA
Sbjct: 181 WQQGGGNLA 188

[Close]

BLAST of CmUC05G093160.1 vs. NCBI nr
Match: KAA0063423.1 (30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 6.0e-81
Identity = 166/193 (86.01%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.0e-48
Identity = 110/190 (57.89%), Postives = 129/190 (67.89%), Query Frame = 0


Query: 2   MLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRR 61
           MLSMAV  QPN+N     S Y +   + KP + P     +           S S  +L++
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPF-------FSSPSFSQLKK 60

Query: 62  QNFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEK 121
           +N  +L ++      V      +   D D +    KEKL V+VKPM+KPRLVLKFIWMEK
Sbjct: 61  KNNWSLFVAPETISDVAIMGNEV---DIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEK 120

Query: 122 NIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIIN 181
           NIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDIIN
Sbjct: 121 NIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIIN 178

Query: 182 LWQQGGGNLA 191
           LWQQ GGNLA
Sbjct: 181 LWQQSGGNLA 178

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 98/179 (54.75%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 33  VPYSVKQRTTAA------------SCIANLHSLSGVKLRRQNFRTLE--ISAAAAEAVEA 92
           +P SV   TT A            S  ++  SL  +K RR   R+L    +AAAA AVEA
Sbjct: 2   LPMSVHPATTPALASRPRVSLPRPSTPSSSSSLVHLKSRRPPLRSLRSLTAAAAAAAVEA 61

Query: 93  -------ASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIP 152
                    +  +  + D+E+    E+  V V   + P LVLKFIWMEKNIGIALDQM+P
Sbjct: 62  GEPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVP 121

Query: 153 GHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 191
           G G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 122 GVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 92/188 (48.94%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNASYTAQTATSKPL-QVPYSVKQRTTAASCIANLHSLSGVKLRRQNF 64
           MAVQ   + +F F  +  +Q  +SKP+  +  S K + ++   ++      G    R + 
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHSC 60

Query: 65  RTLEISAAAAEAVEAASESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNI 124
               I A     +  + E       +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+I
Sbjct: 61  INPGIFAYPPSNLTFSHEL-----PESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDI 120

Query: 125 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 184
           G+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLW
Sbjct: 121 GVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLW 180

Query: 185 QQGGGNLA 191
           Q  GG+L+
Sbjct: 181 QSSGGDLS 183

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-39
Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 68  ISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALD 127
           I+ AA E + A + + +    ++    +K     VVKP EK R+VLKF+WMEKNIG+ LD
Sbjct: 47  ITLAAPETLTAETVTGIDTSDNTPQQTIK-----VVKPDEKSRVVLKFVWMEKNIGLGLD 106

Query: 128 QMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGG 187
           Q +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GG
Sbjct: 107 QHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGG 163

Query: 188 NL 190
           NL
Sbjct: 167 NL 163

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.6e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 110 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 169
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 170 ILLNQATDIINLWQQGG 187
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.7e-85
Identity = 169/193 (87.56%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNVNFCFN S +TAQTA SKP ++P++V+QRTTA+SCI N H++ G++LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  RQNFRTLEISAAAA--EAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQNFRT EISA+AA  EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.2e-84
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL
Match: A0A5D3CJH0 (30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00620 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.9e-81
Identity = 166/193 (86.01%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.4e-80
Identity = 165/202 (81.68%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTA----------ASCIAN 60
           MMLSMAVQLQPN+NFC N S + AQ ATSKP QV + VKQRTTA          +SCIA+
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  LHSLSGVKLRRQNFRTLEIS--AAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPME 120
            H  SG K RRQNFR LE+S  AAA EAVEAASES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 190
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 8.0e-79
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTA--------ASCIANLH 60
           MMLSMAVQLQPNVNFC N S +++  ATSKP QVP+++KQRT A        +SCIA+++
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SLSGVKLRRQNFRTLEI--SAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKP 120
           S+SG+KLRRQ+F+TL++  SAAAA+AV+A SES VADDS SESSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGNLA 191
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmUC05G093160.1 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 92/188 (48.94%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNASYTAQTATSKPL-QVPYSVKQRTTAASCIANLHSLSGVKLRRQNF 64
           MAVQ   + +F F  +  +Q  +SKP+  +  S K + ++   ++      G    R + 
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHSC 60

Query: 65  RTLEISAAAAEAVEAASESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNI 124
               I A     +  + E       +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+I
Sbjct: 61  INPGIFAYPPSNLTFSHEL-----PESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDI 120

Query: 125 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 184
           G+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLW
Sbjct: 121 GVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLW 180

Query: 185 QQGGGNLA 191
           Q  GG+L+
Sbjct: 181 QSSGGDLS 183

[Close]

BLAST of CmUC05G093160.1 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-40
Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 68  ISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALD 127
           I+ AA E + A + + +    ++    +K     VVKP EK R+VLKF+WMEKNIG+ LD
Sbjct: 47  ITLAAPETLTAETVTGIDTSDNTPQQTIK-----VVKPDEKSRVVLKFVWMEKNIGLGLD 106

Query: 128 QMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGG 187
           Q +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GG
Sbjct: 107 QHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGG 163

Query: 188 NL 190
           NL
Sbjct: 167 NL 163

[Close]

BLAST of CmUC05G093160.1 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-40
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 78  AASESLVADD----SDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGH 137
           AA E+L A+       S+++P +      +KP EK R+VLKF+WMEKNIG+ LDQ +PGH
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQ-----TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGH 109

Query: 138 GTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 190
           GTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 GTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 160

The following BLAST results are available for this feature:

BLAST of CmUC05G093160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875586.1	3.0e-88	89.64	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]
XP_004145640.2	1.2e-84	87.56	30S ribosomal protein 3, chloroplastic [Cucumis sativus]	[more]
XP_008461583.1	4.5e-84	87.56	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
KGN57759.2	8.4e-83	87.30	hypothetical protein Csa_011376 [Cucumis sativus]	[more]
KAA0063423.1	6.0e-81	86.01	30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal pro...	[more]

BLAST of CmUC05G093160.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	7.0e-48	57.89	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	5.4e-40	54.75	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9LFV0	1.6e-39	48.94	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q9SX22	4.6e-39	65.57	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P51351	8.6e-22	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of CmUC05G093160.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T8	5.7e-85	87.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A1S3CF24	2.2e-84	87.56	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A5D3CJH0	2.9e-81	86.01	30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D356	9.4e-80	81.68	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	8.0e-79	79.60	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CmUC05G093160.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15760.1	1.1e-40	48.94	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	3.2e-40	65.57	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	7.2e-40	68.10	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 110..188 e-value: 2.7E-33 score: 115.9
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 138..184 e-value: 1.0E-26 score: 92.9
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..190
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..190

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC05G093160	CmUC05G093160	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G093160.1-exon	CmUC05G093160.1-exon-CmU531Chr05:13536719..13537068	exon
CmUC05G093160.1-exon	CmUC05G093160.1-exon-CmU531Chr05:13538891..13539475	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G093160.1-five_prime_utr	CmUC05G093160.1-five_prime_utr-CmU531Chr05:13536719..13536777	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G093160.1-cds	CmUC05G093160.1-cds-CmU531Chr05:13536778..13537068	CDS
CmUC05G093160.1-cds	CmUC05G093160.1-cds-CmU531Chr05:13538891..13539172	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G093160.1-three_prime_utr	CmUC05G093160.1-three_prime_utr-CmU531Chr05:13539173..13539475	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC05G093160.1	CmUC05G093160.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups