Clc10G16123.1 (mRNA) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGTGTATTTGGTACAACTTACTACACCACGTTATAGCTTTTCGTAACAATAGGATTTATTTGAAACACATGAATGTCAATGTTCTACTAATGGTAATGTCACCAGTTCTTTCACACTATGGATGTCACATTCTTTGAATAACAGTCATATTTTTCCGATTTTGCAATTCAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA MVLICDDVHIVVDKKTTSHVKQHHLNSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELFKIKSTLQDLKQGEHYDLEPQNWDCIPNFPLISSFENSPIPSFEESPICNLSLNCKLTCKEQDNLSGRKYNLHKFSKAKI Homology
BLAST of Clc10G16123.1 vs. NCBI nr
Match: CAN68990.1 (hypothetical protein VITISV_015170 [Vitis vinifera]) HSP 1 Score: 88.6 bits (218), Expect = 5.5e-14 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of Clc10G16123.1 vs. NCBI nr
Match: RVX02119.1 (hypothetical protein CK203_025357 [Vitis vinifera]) HSP 1 Score: 88.2 bits (217), Expect = 7.2e-14 Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0
BLAST of Clc10G16123.1 vs. NCBI nr
Match: XP_042976301.1 (uncharacterized protein LOC122307467 [Carya illinoinensis]) HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13 Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 0
BLAST of Clc10G16123.1 vs. NCBI nr
Match: RVW54694.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]) HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of Clc10G16123.1 vs. NCBI nr
Match: RVX20874.1 (hypothetical protein CK203_002528 [Vitis vinifera]) HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of Clc10G16123.1 vs. ExPASy TrEMBL
Match: A5AG88 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015170 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of Clc10G16123.1 vs. ExPASy TrEMBL
Match: A0A438IZK0 (Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_025357 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 3.5e-14 Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0
BLAST of Clc10G16123.1 vs. ExPASy TrEMBL
Match: A0A438KI33 (Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_002528 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of Clc10G16123.1 vs. ExPASy TrEMBL
Match: A0A438F3U7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1896 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
BLAST of Clc10G16123.1 vs. ExPASy TrEMBL
Match: A0A438J025 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_028392 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13 Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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