Clc10G16123 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G16123
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	ClcChr10: 29914545 .. 29915209 (+)
RNA-Seq Expression	Clc10G16123
Synteny	Clc10G16123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGTGTATTTGGTACAACTTACTACACCACGTTATAGCTTTTCGTAACAATAGGATTTATTTGAAACACATGAATGTCAATGTTCTACTAATGGTAATGTCACCAGTTCTTTCACACTATGGATGTCACATTCTTTGAATAACAGTCATATTTTTCCGATTTTGCAATTCAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA

mRNA sequence

ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA

Coding sequence (CDS)

ATGGTCCTAATTTGTGATGATGTTCATATAGTCGTAGACAAGAAGACTACATCACATGTAAAGCAACATCACCTGAACTCGACGATCCAAAATTTCCCAAATGGAGGGATAGGGAACAATCAAGTTGTGAGTTGGTTGATCAAGTCCATGTCTATTGAGATCAGGGAGAATTTTTACCTATATTCAACTGCCAAACAAATTTGGGATGCTGCTCAAGATACTTTCTCAAATAAGGAAAGCACTGTTGAACTTTTCAAGATCAAGAGTACTCTCCAAGATCTCAAACAAGGGGAACATTATGATCTTGAACCACAAAATTGGGACTGTATTCCTAACTTTCCTTTAATCTCATCCTTCGAAAATTCTCCTATACCTTCTTTTGAGGAAAGTCCCATATGTAATTTAAGCCTGAACTGCAAGCTTACTTGCAAAGAGCAAGACAACTTGAGTGGAAGGAAATACAATCTCCACAAGTTCAGCAAAGCCAAAATCTAA

Protein sequence

MVLICDDVHIVVDKKTTSHVKQHHLNSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELFKIKSTLQDLKQGEHYDLEPQNWDCIPNFPLISSFENSPIPSFEESPICNLSLNCKLTCKEQDNLSGRKYNLHKFSKAKI

Homology

[Close]

BLAST of Clc10G16123 vs. NCBI nr
Match: CAN68990.1 (hypothetical protein VITISV_015170 [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 5.5e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F      NN V+SWLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE---------------HYDL-EPQNWDCI 111
           +++S L D +QGE                 DL E  NW C+
Sbjct: 113 EVESVLHDFRQGELTVTQYFNTLNRYWQQLDLFEEHNWSCL 153

[Close]

BLAST of Clc10G16123 vs. NCBI nr
Match: RVX02119.1 (hypothetical protein CK203_025357 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 7.2e-14
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+SWLI SM+ +I ENF LY TAK+IWD A++T+SN E+T ELF
Sbjct: 75  NKTDKKFKVWNVENNMVMSWLINSMTNDIGENFLLYGTAKEIWDIAKETYSNNENTSELF 134

Query: 86  KIKSTLQDLKQGE 99
           K+KS L D +QGE
Sbjct: 135 KVKSVLHDFRQGE 147

[Close]

BLAST of Clc10G16123 vs. NCBI nr
Match: XP_042976301.1 (uncharacterized protein LOC122307467 [Carya illinoinensis])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F      NN V+SWLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T ELF
Sbjct: 21  NKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTSELF 80

Query: 86  KIKSTLQDLKQGE---------------HYDL-EPQNWDC 110
           +++S L D +QGE                 DL E  NW C
Sbjct: 81  EVESVLHDFRQGELTVTQYFNTLIRYWQQLDLFEEHNWSC 120

[Close]

BLAST of Clc10G16123 vs. NCBI nr
Match: RVW54694.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+ WLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE 99
           +++S L D +QGE
Sbjct: 113 EVESVLHDFRQGE 125

[Close]

BLAST of Clc10G16123 vs. NCBI nr
Match: RVX20874.1 (hypothetical protein CK203_002528 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+ WLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE 99
           +++S L D +QGE
Sbjct: 113 EVESVLHDFRQGE 125

[Close]

BLAST of Clc10G16123 vs. ExPASy TrEMBL
Match: A5AG88 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015170 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F      NN V+SWLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE---------------HYDL-EPQNWDCI 111
           +++S L D +QGE                 DL E  NW C+
Sbjct: 113 EVESVLHDFRQGELTVTQYFNTLNRYWQQLDLFEEHNWSCL 153

[Close]

BLAST of Clc10G16123 vs. ExPASy TrEMBL
Match: A0A438IZK0 (Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_025357 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-14
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+SWLI SM+ +I ENF LY TAK+IWD A++T+SN E+T ELF
Sbjct: 75  NKTDKKFKVWNVENNMVMSWLINSMTNDIGENFLLYGTAKEIWDIAKETYSNNENTSELF 134

Query: 86  KIKSTLQDLKQGE 99
           K+KS L D +QGE
Sbjct: 135 KVKSVLHDFRQGE 147

[Close]

BLAST of Clc10G16123 vs. ExPASy TrEMBL
Match: A0A438KI33 (Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_002528 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+ WLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE 99
           +++S L D +QGE
Sbjct: 113 EVESVLHDFRQGE 125

[Close]

BLAST of Clc10G16123 vs. ExPASy TrEMBL
Match: A0A438F3U7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1896 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 26  NSTIQNFPNGGIGNNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELF 85
           N T + F    + NN V+ WLI SM+ +I ENF LY TAK+IWDAA++T+SN E+T+ELF
Sbjct: 53  NKTDEKFKVWNVENNMVMLWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELF 112

Query: 86  KIKSTLQDLKQGE 99
           +++S L D +QGE
Sbjct: 113 EVESVLHDFRQGE 125

[Close]

BLAST of Clc10G16123 vs. ExPASy TrEMBL
Match: A0A438J025 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_028392 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 39  NNQVVSWLIKSMSIEIRENFYLYSTAKQIWDAAQDTFSNKESTVELFKIKSTLQDLKQG- 98
           N+ V+SWLI SM+  I ENF LY T K+IWD A++T+SN E+T E+F+I++TL DL+QG 
Sbjct: 33  NHMVMSWLINSMNTNIGENFLLYGTTKEIWDVARETYSNSENTSEIFEIEATLHDLRQGD 92

Query: 99  --------------EHYDL-EPQNWDCIPNFPLISSFENSPIPSFEE--SPICNLSLNCK 149
                         +H D+ E   W C  +  L       P+PS  E  S +C+     K
Sbjct: 93  LSVTQYFNILSRHWQHLDMFEIHTWKCPEDTALGRVMGTKPLPSIREAFSEVCHEESRKK 152

The following BLAST results are available for this feature:

BLAST of Clc10G16123 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN68990.1	5.5e-14	45.54	hypothetical protein VITISV_015170 [Vitis vinifera]	[more]
RVX02119.1	7.2e-14	56.16	hypothetical protein CK203_025357 [Vitis vinifera]	[more]
XP_042976301.1	2.1e-13	46.00	uncharacterized protein LOC122307467 [Carya illinoinensis]	[more]
RVW54694.1	2.7e-13	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX20874.1	2.7e-13	53.42	hypothetical protein CK203_002528 [Vitis vinifera]	[more]

BLAST of Clc10G16123 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G16123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AG88	2.7e-14	45.54	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438IZK0	3.5e-14	56.16	Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_02...	[more]
A0A438KI33	1.3e-13	53.42	Retrotran_gag_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_00...	[more]
A0A438F3U7	1.3e-13	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438J025	2.9e-13	37.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_028392 PE=4 SV=1	[more]

BLAST of Clc10G16123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 28..98
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 28..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G16123.1	Clc10G16123.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity