Clc09G16620.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc09G16620.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr09: 26289184 .. 26289835 (+)
Sequence length	588
RNA-Seq Expression	Clc09G16620.1
Synteny	Clc09G16620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGGTGAGTGAGTGTCCGAAACGAACGACGTTTAATGCCTTCCAAACCGCCCTGGCAACTGACGTAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA

mRNA sequence

ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA

Coding sequence (CDS)

ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA

Protein sequence

MSRSYHNGKALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSAYATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSGNTWRGPNQQNNYYRPPQCFQCKRPYRWANRSTRDGNPTNRRGRQPLNGGVEILIGYPKEDGRDQRTC

Homology

[Close]

BLAST of Clc09G16620.1 vs. NCBI nr
Match: KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 108/180 (60.00%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 72  KLRELKHTGNIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 131

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AER FDLSND QD R    SSSGGNK++R + P+ A GDK  SGDRKP+   Q  +G
Sbjct: 132 YAAAERFFDLSNDSQDVRRNQNSSSGGNKSNRPTSPKAAGGDKRPSGDRKPF---QTNTG 191

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPYRWANRSTRDGNPTNRRGRQPLNGGVEILIGYPKED 188
           NTWRGPN QN+Y RP               S  +G       ++   GG+EILI  P+E+
Sbjct: 192 NTWRGPNNQNSYNRPLNSDD--------KSSQAEGEVGQTEEKRIFFGGLEILIVSPEEE 240

[Close]

BLAST of Clc09G16620.1 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-44
Identity = 99/145 (68.28%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+  SGDR+ Y   Q  +G
Sbjct: 316 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSY---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG N QN   RP  CF CK P+
Sbjct: 376 NSWRGSNNQNLSNRPLSCFICKGPH 397

[Close]

BLAST of Clc09G16620.1 vs. NCBI nr
Match: KAA0045217.1 (uncharacterized protein E6C27_scaffold30G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-44
Identity = 97/145 (66.90%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YATAERLFDLSN+ QDTR   +SSSGG++N+R S P+   GD+  +GDR+ +   Q  +G
Sbjct: 316 YATAERLFDLSNNSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSH---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRGP+ QN   RP  CF CK P+
Sbjct: 376 NSWRGPSNQNLSNRPLSCFICKGPH 397

[Close]

BLAST of Clc09G16620.1 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-43
Identity = 97/145 (66.90%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+  +GDR+ +   Q  +G
Sbjct: 316 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSH---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG + QN   RP  CF CKRP+
Sbjct: 376 NSWRGSSNQNLSNRPLSCFICKRPH 397

[Close]

BLAST of Clc09G16620.1 vs. NCBI nr
Match: KAA0047432.1 (uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-43
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTS 
Sbjct: 144 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTST 203

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+ S+GDR+ Y   Q  +G
Sbjct: 204 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRSNGDRRSY---QSNTG 263

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG + QN   RP  CF CK P+
Sbjct: 264 NSWRGSSNQNLSNRPLSCFICKGPH 285

[Close]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL
Match: A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46
Identity = 108/180 (60.00%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 72  KLRELKHTGNIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 131

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AER FDLSND QD R    SSSGGNK++R + P+ A GDK  SGDRKP+   Q  +G
Sbjct: 132 YAAAERFFDLSNDSQDVRRNQNSSSGGNKSNRPTSPKAAGGDKRPSGDRKPF---QTNTG 191

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPYRWANRSTRDGNPTNRRGRQPLNGGVEILIGYPKED 188
           NTWRGPN QN+Y RP               S  +G       ++   GG+EILI  P+E+
Sbjct: 192 NTWRGPNNQNSYNRPLNSDD--------KSSQAEGEVGQTEEKRIFFGGLEILIVSPEEE 240

[Close]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 99/145 (68.28%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+  SGDR+ Y   Q  +G
Sbjct: 316 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSY---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG N QN   RP  CF CK P+
Sbjct: 376 NSWRGSNNQNLSNRPLSCFICKGPH 397

[Close]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL
Match: A0A5A7TTJ4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G002260 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.8e-44
Identity = 97/145 (66.90%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YATAERLFDLSN+ QDTR   +SSSGG++N+R S P+   GD+  +GDR+ +   Q  +G
Sbjct: 316 YATAERLFDLSNNSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSH---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRGP+ QN   RP  CF CK P+
Sbjct: 376 NSWRGPSNQNLSNRPLSCFICKGPH 397

[Close]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.0e-44
Identity = 97/145 (66.90%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTSA
Sbjct: 256 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSA 315

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+  +GDR+ +   Q  +G
Sbjct: 316 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSH---QSNTG 375

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG + QN   RP  CF CKRP+
Sbjct: 376 NSWRGSSNQNLSNRPLSCFICKRPH 397

[Close]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL
Match: A0A5A7TVD8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00230 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.0e-44
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   KALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSA 68
           K  EL+HTG I +YVKQFAGLMLDIRDMSEKDK FCFVEGLKPW K KLYEQRVQDLTS 
Sbjct: 144 KLRELKHTGSIREYVKQFAGLMLDIRDMSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTST 203

Query: 69  YATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSG 128
           YA AERLFDLSND QDTR   +SSSGG++N+R S P+   GD+ S+GDR+ Y   Q  +G
Sbjct: 204 YAAAERLFDLSNDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRSNGDRRSY---QSNTG 263

Query: 129 NTWRGPNQQNNYYRPPQCFQCKRPY 154
           N+WRG + QN   RP  CF CK P+
Sbjct: 264 NSWRGSSNQNLSNRPLSCFICKGPH 285

The following BLAST results are available for this feature:

BLAST of Clc09G16620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062527.1	1.1e-45	60.00	uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]	[more]
KAA0032849.1	2.1e-44	68.28	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0045217.1	7.9e-44	66.90	uncharacterized protein E6C27_scaffold30G002260 [Cucumis melo var. makuwa]	[more]
KAA0031722.1	1.0e-43	66.90	uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]	[more]
KAA0047432.1	1.0e-43	66.90	uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G16620.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6G0	5.4e-46	60.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SUK4	1.0e-44	68.28	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5A7TTJ4	3.8e-44	66.90	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SKW3	5.0e-44	66.90	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TVD8	5.0e-44	66.90	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Clc09G16620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc09G16620	Clc09G16620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G16620.1-exon	Clc09G16620.1-exon-ClcChr09:26289184..26289644	exon
Clc09G16620.1-exon	Clc09G16620.1-exon-ClcChr09:26289709..26289835	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G16620.1-cds	Clc09G16620.1-cds-ClcChr09:26289184..26289644	CDS
Clc09G16620.1-cds	Clc09G16620.1-cds-ClcChr09:26289709..26289835	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc09G16620.1	Clc09G16620.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity