Clc09G16620 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGGTGAGTGAGTGTCCGAAACGAACGACGTTTAATGCCTTCCAAACCGCCCTGGCAACTGACGTAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA ATGTCGAGATCTTATCACAACGGAAAGGCCCTTGAGTTGAGACACACGGGCCTTATCTGGGACTATGTGAAACAGTTTGCAGGGTTAATGTTGGACATACGTGATATGTCCGAGAAGGACAAAGCATTTTGTTTTGTCGAAGGATTGAAACCATGGGTGAAGGCCAAACTGTACGAACAGAGAGTACAGGACCTCACATCGGCATATGCGACTGCCGAACGATTGTTTGACCTCAGTAATGACGTCCAAGACACTAGATGGCAGTCAACTTCCTCTAGCGGAGGAAATAAGAACAGTCGGGCAAGCCCACCTCGAAATGCTGAAGGGGACAAAAATTCGAGTGGAGATCGAAAGCCCTATCAACCCCCTCAACCAAGGAGTGGGAATACTTGGCGGGGGCCTAATCAACAGAACAATTACTACCGGCCCCCACAGTGCTTCCAATGTAAAAGACCATACAGATGGGCAAACCGATCAACTAGAGACGGAAACCCCACCAACAGAAGAGGGAGACAACCCTTGAATGGGGGCGTTGAAATTCTTATTGGCTATCCAAAGGAAGATGGGAGAGACCAAAGAACCTGTTGA MSRSYHNGKALELRHTGLIWDYVKQFAGLMLDIRDMSEKDKAFCFVEGLKPWVKAKLYEQRVQDLTSAYATAERLFDLSNDVQDTRWQSTSSSGGNKNSRASPPRNAEGDKNSSGDRKPYQPPQPRSGNTWRGPNQQNNYYRPPQCFQCKRPYRWANRSTRDGNPTNRRGRQPLNGGVEILIGYPKEDGRDQRTC Homology
BLAST of Clc09G16620 vs. NCBI nr
Match: KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]) HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45 Identity = 108/180 (60.00%), Postives = 123/180 (68.33%), Query Frame = 0
BLAST of Clc09G16620 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 189.9 bits (481), Expect = 2.1e-44 Identity = 99/145 (68.28%), Postives = 111/145 (76.55%), Query Frame = 0
BLAST of Clc09G16620 vs. NCBI nr
Match: KAA0045217.1 (uncharacterized protein E6C27_scaffold30G002260 [Cucumis melo var. makuwa]) HSP 1 Score: 188.0 bits (476), Expect = 7.9e-44 Identity = 97/145 (66.90%), Postives = 113/145 (77.93%), Query Frame = 0
BLAST of Clc09G16620 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]) HSP 1 Score: 187.6 bits (475), Expect = 1.0e-43 Identity = 97/145 (66.90%), Postives = 112/145 (77.24%), Query Frame = 0
BLAST of Clc09G16620 vs. NCBI nr
Match: KAA0047432.1 (uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]) HSP 1 Score: 187.6 bits (475), Expect = 1.0e-43 Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0
BLAST of Clc09G16620 vs. ExPASy TrEMBL
Match: A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46 Identity = 108/180 (60.00%), Postives = 123/180 (68.33%), Query Frame = 0
BLAST of Clc09G16620 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44 Identity = 99/145 (68.28%), Postives = 111/145 (76.55%), Query Frame = 0
BLAST of Clc09G16620 vs. ExPASy TrEMBL
Match: A0A5A7TTJ4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G002260 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 3.8e-44 Identity = 97/145 (66.90%), Postives = 113/145 (77.93%), Query Frame = 0
BLAST of Clc09G16620 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 5.0e-44 Identity = 97/145 (66.90%), Postives = 112/145 (77.24%), Query Frame = 0
BLAST of Clc09G16620 vs. ExPASy TrEMBL
Match: A0A5A7TVD8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00230 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 5.0e-44 Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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