Clc07G17360.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc07G17360.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DUF740 domain-containing protein
Location	ClcChr07: 31752334 .. 31752936 (+)
Sequence length	603
RNA-Seq Expression	Clc07G17360.1
Synteny	Clc07G17360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAGAATTCACATTTCACACGCACGCACGATACTCTGTCTCTGTTTCTCTCTCTTTTTTATATCCCAATTCACAACTAAAAGAAGAGACGCAAAACAAAAAAACAAAAAGAGGAAAAGAGGGAGAGACAGAGAGAAAAACACAAAAATTGAAGAAACATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGATTCATTATTCTGTAT

mRNA sequence

AAAAAAGAGAATTCACATTTCACACGCACGCACGATACTCTGTCTCTGTTTCTCTCTCTTTTTTATATCCCAATTCACAACTAAAAGAAGAGACGCAAAACAAAAAAACAAAAAGAGGAAAAGAGGGAGAGACAGAGAGAAAAACACAAAAATTGAAGAAACATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGATTCATTATTCTGTAT

Coding sequence (CDS)

ATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGA

Protein sequence

MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSSEFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGGGKKKLGFWSRLLLRPKAFYFP

Homology

[Close]

BLAST of Clc07G17360.1 vs. NCBI nr
Match: XP_038900289.1 (uncharacterized protein LOC120087549 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPNHNLLPGICPSCL EKLQQFHQS + SDSHST FSSSSS     SS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPVCSDSHSTFFSSSSSP----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAK-G 120
           +FFFSADSSHR RR    HHRRNASE VTGSMTADLFGDK+KKSGSIRISADGGAGAK G
Sbjct: 61  DFFFSADSSHRRRR---QHHRRNASEFVTGSMTADLFGDKMKKSGSIRISADGGAGAKGG 120

Query: 121 GGKKKLGFWSRLL 133
           GGKKKLGFWSRLL
Sbjct: 121 GGKKKLGFWSRLL 126

[Close]

BLAST of Clc07G17360.1 vs. NCBI nr
Match: KAA0044717.1 (DUF740 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-48
Identity = 114/140 (81.43%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPN+NLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR   HHHRRNASE VTGSM  DL  DKLKKSGSIRISADGG GA   
Sbjct: 61  DFFFSADSSRRHRR---HHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGGTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 132

[Close]

BLAST of Clc07G17360.1 vs. NCBI nr
Match: XP_008453802.1 (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo] >TYK16870.1 DUF740 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPN+NLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR   HHHRRNASE VTGSM  DL  DKLKKSGSIRISADG  GA   
Sbjct: 61  DFFFSADSSRRHRR---HHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 132

[Close]

BLAST of Clc07G17360.1 vs. NCBI nr
Match: XP_031745668.1 (uncharacterized protein LOC116406103 [Cucumis sativus] >XP_031745670.1 uncharacterized protein LOC116406105 [Cucumis sativus] >KAE8637171.1 hypothetical protein CSA_018802 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 112/140 (80.00%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPNHNLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR    HHRRNASE VTGSM  DL  DKLKK+GSIRIS DGG GA   
Sbjct: 61  DFFFSADSSRRHRR----HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 131

[Close]

BLAST of Clc07G17360.1 vs. NCBI nr
Match: XP_022985135.1 (uncharacterized protein LOC111483218, partial [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 101/142 (71.13%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSI--YSDSHSTTFSSSSSSSLPH 60
           MGKSESAKECKRH NHN LPGICPSCL E+LQQ  QSS   YSDS ST     SSSS   
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRST-----SSSSFLK 115

Query: 61  SSEFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAK 120
           SSE FFS ++S R R      H RNASELVTGSM ADLFGDK+KKS SIRISADGG G  
Sbjct: 116 SSESFFSGNTSWRRR------HTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGG 175

Query: 121 GGGKKKLGFWSRLLLRPKAFYF 141
           GGGKKK+GFWSR L+RPKA YF
Sbjct: 176 GGGKKKVGFWSRFLVRPKALYF 186

[Close]

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL
Match: A0A5A7TS78 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004740 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.3e-49
Identity = 114/140 (81.43%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPN+NLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR   HHHRRNASE VTGSM  DL  DKLKKSGSIRISADGG GA   
Sbjct: 61  DFFFSADSSRRHRR---HHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGGTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 132

[Close]

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL
Match: A0A5D3CZT1 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00010 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48
Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPN+NLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR   HHHRRNASE VTGSM  DL  DKLKKSGSIRISADG  GA   
Sbjct: 61  DFFFSADSSRRHRR---HHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 132

[Close]

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL
Match: A0A1S3BWL8 (uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48
Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPN+NLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR   HHHRRNASE VTGSM  DL  DKLKKSGSIRISADG  GA   
Sbjct: 61  DFFFSADSSRRHRR---HHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 132

[Close]

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL
Match: A0A0A0KZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.1e-48
Identity = 112/140 (80.00%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSS 60
           MGKSESAKECKRHPNHNLLPGICPSCL EKLQQFHQS  YSDS S TFSS SSS    SS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQS-TFSSPSSS----SS 60

Query: 61  EFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGG 120
           +FFFSADSS RHRR    HHRRNASE VTGSM  DL  DKLKK+GSIRIS DGG GA   
Sbjct: 61  DFFFSADSSRRHRR----HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVK 120

Query: 121 GKKKLGFWSRLLLRPKAFYF 141
           GKKKLGFWSRLLLRPKA YF
Sbjct: 121 GKKKLGFWSRLLLRPKALYF 131

[Close]

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL
Match: A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 101/142 (71.13%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSI--YSDSHSTTFSSSSSSSLPH 60
           MGKSESAKECKRH NHN LPGICPSCL E+LQQ  QSS   YSDS ST     SSSS   
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRST-----SSSSFLK 115

Query: 61  SSEFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAK 120
           SSE FFS ++S R R      H RNASELVTGSM ADLFGDK+KKS SIRISADGG G  
Sbjct: 116 SSESFFSGNTSWRRR------HTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGG 175

Query: 121 GGGKKKLGFWSRLLLRPKAFYF 141
           GGGKKK+GFWSR L+RPKA YF
Sbjct: 176 GGGKKKVGFWSRFLVRPKALYF 186

[Close]

BLAST of Clc07G17360.1 vs. TAIR 10
Match: AT1G22470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.1e-04
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 10  CKRHPNHNLLPGICPSCLTEKLQQF------HQSSIYSDSHSTTFSSSSSSSLPHSSEFF 69
           CK+HP H   PGIC  CL E L +       + SS+ S S + T SS SS+S    S+F 
Sbjct: 41  CKKHPKHRQSPGICSLCLNESLSKLSSEFYDYSSSMSSSSLAKTMSSCSSASSESESDFS 100

Query: 70  FSADSSH 71
            +A SS+
Sbjct: 101 STAISSY 107

The following BLAST results are available for this feature:

BLAST of Clc07G17360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900289.1	1.6e-49	85.71	uncharacterized protein LOC120087549 [Benincasa hispida]	[more]
KAA0044717.1	1.7e-48	81.43	DUF740 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008453802.1	8.5e-48	80.71	PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo] >TYK16870.1 DUF74...	[more]
XP_031745668.1	1.5e-47	80.00	uncharacterized protein LOC116406103 [Cucumis sativus] >XP_031745670.1 uncharact...	[more]
XP_022985135.1	2.9e-40	71.13	uncharacterized protein LOC111483218, partial [Cucurbita maxima]	[more]

BLAST of Clc07G17360.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G17360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TS78	8.3e-49	81.43	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CZT1	4.1e-48	80.71	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BWL8	4.1e-48	80.71	uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=...	[more]
A0A0A0KZB2	7.1e-48	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1	[more]
A0A6J1JAI6	1.4e-40	71.13	uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218...	[more]

BLAST of Clc07G17360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22470.1	8.1e-04	41.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Protein OCTOPUS-like	PFAM	PF05340	DUF740	coord: 6..58 e-value: 5.3E-6 score: 25.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..83
None	No IPR available	PANTHER	PTHR34046:SF18	RAPIDLY ELICITED PROTEIN, PUTATIVE-RELATED	coord: 1..132
None	No IPR available	PANTHER	PTHR34046	OS06G0218800 PROTEIN	coord: 1..132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc07G17360	Clc07G17360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G17360.1-exon	Clc07G17360.1-exon-ClcChr07:31752334..31752936	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G17360.1-five_prime_utr	Clc07G17360.1-five_prime_utr-ClcChr07:31752334..31752495	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G17360.1-cds	Clc07G17360.1-cds-ClcChr07:31752496..31752921	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G17360.1-three_prime_utr	Clc07G17360.1-three_prime_utr-ClcChr07:31752922..31752936	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc07G17360.1	Clc07G17360.1-protein	polypeptide