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Clc07G17360 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAGAGAATTCACATTTCACACGCACGCACGATACTCTGTCTCTGTTTCTCTCTCTTTTTTATATCCCAATTCACAACTAAAAGAAGAGACGCAAAACAAAAAAACAAAAAGAGGAAAAGAGGGAGAGACAGAGAGAAAAACACAAAAATTGAAGAAACATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGATTCATTATTCTGTAT AAAAAAGAGAATTCACATTTCACACGCACGCACGATACTCTGTCTCTGTTTCTCTCTCTTTTTTATATCCCAATTCACAACTAAAAGAAGAGACGCAAAACAAAAAAACAAAAAGAGGAAAAGAGGGAGAGACAGAGAGAAAAACACAAAAATTGAAGAAACATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGATTCATTATTCTGTAT ATGGGGAAATCGGAATCGGCGAAAGAATGCAAGAGGCACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCCTGTCTTACAGAAAAGCTTCAACAATTCCATCAATCTTCTATTTATTCCGATTCTCATTCGACCACCTTCTCTTCTTCTTCTTCCTCTTCCCTTCCTCACTCCTCTGAATTTTTCTTCTCCGCCGATTCCTCACACCGCCACCGCCGCCACCACCACCACCACCACCGTAGGAACGCCTCCGAGTTGGTCACTGGGTCGATGACCGCAGATTTGTTTGGGGACAAGCTGAAGAAGAGCGGCTCCATTAGGATCTCGGCCGATGGCGGCGCCGGGGCCAAAGGAGGAGGAAAGAAGAAACTTGGGTTTTGGTCCAGGTTGTTACTCCGCCCCAAGGCTTTCTATTTTCCTTGA MGKSESAKECKRHPNHNLLPGICPSCLTEKLQQFHQSSIYSDSHSTTFSSSSSSSLPHSSEFFFSADSSHRHRRHHHHHHRRNASELVTGSMTADLFGDKLKKSGSIRISADGGAGAKGGGKKKLGFWSRLLLRPKAFYFP Homology
BLAST of Clc07G17360 vs. NCBI nr
Match: XP_038900289.1 (uncharacterized protein LOC120087549 [Benincasa hispida]) HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49 Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = 0
BLAST of Clc07G17360 vs. NCBI nr
Match: KAA0044717.1 (DUF740 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 203.0 bits (515), Expect = 1.7e-48 Identity = 114/140 (81.43%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of Clc07G17360 vs. NCBI nr
Match: XP_008453802.1 (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo] >TYK16870.1 DUF740 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48 Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0
BLAST of Clc07G17360 vs. NCBI nr
Match: XP_031745668.1 (uncharacterized protein LOC116406103 [Cucumis sativus] >XP_031745670.1 uncharacterized protein LOC116406105 [Cucumis sativus] >KAE8637171.1 hypothetical protein CSA_018802 [Cucumis sativus]) HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47 Identity = 112/140 (80.00%), Postives = 114/140 (81.43%), Query Frame = 0
BLAST of Clc07G17360 vs. NCBI nr
Match: XP_022985135.1 (uncharacterized protein LOC111483218, partial [Cucurbita maxima]) HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40 Identity = 101/142 (71.13%), Postives = 107/142 (75.35%), Query Frame = 0
BLAST of Clc07G17360 vs. ExPASy TrEMBL
Match: A0A5A7TS78 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004740 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 8.3e-49 Identity = 114/140 (81.43%), Postives = 116/140 (82.86%), Query Frame = 0
BLAST of Clc07G17360 vs. ExPASy TrEMBL
Match: A0A5D3CZT1 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00010 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48 Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0
BLAST of Clc07G17360 vs. ExPASy TrEMBL
Match: A0A1S3BWL8 (uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48 Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0
BLAST of Clc07G17360 vs. ExPASy TrEMBL
Match: A0A0A0KZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 7.1e-48 Identity = 112/140 (80.00%), Postives = 114/140 (81.43%), Query Frame = 0
BLAST of Clc07G17360 vs. ExPASy TrEMBL
Match: A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40 Identity = 101/142 (71.13%), Postives = 107/142 (75.35%), Query Frame = 0
BLAST of Clc07G17360 vs. TAIR 10
Match: AT1G22470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 8.1e-04 Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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