Clc04G06680.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc04G06680.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	High mobility group B protein 6
Location	ClcChr04: 20041589 .. 20042687 (+)
Sequence length	861
RNA-Seq Expression	Clc04G06680.2
Synteny	Clc04G06680.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTATTAAATAAAGTAGCCGTTGCCGCCTGTATGCTTTCAAATTCAAACCCTAAAAACACAAAAATCCAAATCCTTGAGAACCCCCTTTTCTCCCATTCTTCATTCTCTTTTTCTATGATTCCATTTCTTCTCTTTCAAACCAATTCTCCATCTCCATCGATATGCAGACTCTCCACCATCCCTTAGCCTCTCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGCCCACTCCAGCCGAAGAATTCTCTCCCAAATCCTCTTCCTTCCGTCGCCAAAATCATCAAATCCAAGCCGGAAAGGATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAACAATCCGCCGATTCACCCAGCGGCAACTGCCACAACGGCGAGTATTGAGTCTTGTGATTTGTCTCTGGCGGATGAGCTTAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGCAGATGTTGAGAGAGAGGGATTTGGTCTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAAGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTGTATGGTAAATGACTAAACGTTCTGTTTTGTGAGTTTAAAGTTTCGATTCGATTTGTTGTTCGTTCGCTGATTTTTGATGATTTGAATCAGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGTAAGTTCCGATCTCAAATTTCGAAGCTATTTCTCTATTTTCAGAAACTCTGGGTTCATCCGCTTCAATGATTGTTTCAGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGGTTTTTGAAATCGTTTTAAGTTTTGTTCGCCGCTTTCAATTTGCCCTAATTTTCCGATCACTACTACTTCAGAAAAAGAAATCAATGTAATACCTCATTATGATCTTCTTTATGCACTGAACGAAACTTCTGAGTTGTACTCAATATCATTCTCCATCTTCTTCACTTCAATTAATGCTTGA

mRNA sequence

GTTATTATTAAATAAAGTAGCCGTTGCCGCCTGTATGCTTTCAAATTCAAACCCTAAAAACACAAAAATCCAAATCCTTGAGAACCCCCTTTTCTCCCATTCTTCATTCTCTTTTTCTATGATTCCATTTCTTCTCTTTCAAACCAATTCTCCATCTCCATCGATATGCAGACTCTCCACCATCCCTTAGCCTCTCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGCCCACTCCAGCCGAAGAATTCTCTCCCAAATCCTCTTCCTTCCGTCGCCAAAATCATCAAATCCAAGCCGGAAAGGATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAACAATCCGCCGATTCACCCAGCGGCAACTGCCACAACGGCGAGTATTGAGTCTTGTGATTTGTCTCTGGCGGATGAGCTTAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGCAGATGTTGAGAGAGAGGGATTTGGTCTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAAGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGAAAAAGAAATCAATGTAATACCTCATTATGATCTTCTTTATGCACTGAACGAAACTTCTGAGTTGTACTCAATATCATTCTCCATCTTCTTCACTTCAATTAATGCTTGA

Coding sequence (CDS)

ATGCAGACTCTCCACCATCCCTTAGCCTCTCCTCAAGATCTTCCTCTCAAGTCCGGCCGCCGCCCACTCCAGCCGAAGAATTCTCTCCCAAATCCTCTTCCTTCCGTCGCCAAAATCATCAAATCCAAGCCGGAAAGGATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAACAATCCGCCGATTCACCCAGCGGCAACTGCCACAACGGCGAGTATTGAGTCTTGTGATTTGTCTCTGGCGGATGAGCTTAATGCGGTTAAGAGGAAGCTCGAGAGATTGAGATTGGACGGTGAACGAACGGAGCAGATGTTGAGAGAGAGGGATTTGGTCTTGGAGTTACGGATGAAGGAGCTGTTGCAGAGAAGTCAAGAGCAGAGAGATCTGGAGATGGAAGTCGATAGGTTATTCAGATTAAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCGATTCGGAGTCTCAGAGAGAAAGAGCGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTGCAGAATTCGTAACAGAAAAAGAAATCAATGTAATACCTCATTATGATCTTCTTTATGCACTGAACGAAACTTCTGAGTTGTACTCAATATCATTCTCCATCTTCTTCACTTCAATTAATGCTTGA

Protein sequence

MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVTEKEINVIPHYDLLYALNETSELYSISFSIFFTSINA

Homology

[Close]

BLAST of Clc04G06680.2 vs. NCBI nr
Match: XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-90
Identity = 185/195 (94.87%), Postives = 187/195 (95.90%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPLA+PQDLPLKSGRRPLQPKNSLPN  PSVAK IKSKPERIQISLSGDANKEN+
Sbjct: 1   MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PPIH  AT TTASIESCD SLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL
Sbjct: 61  PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDSA FVT
Sbjct: 181 SVGENSSLDSAGFVT 195

[Close]

BLAST of Clc04G06680.2 vs. NCBI nr
Match: KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 6.9e-87
Identity = 179/195 (91.79%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL SP+D+PLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. NCBI nr
Match: XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 5.8e-86
Identity = 178/195 (91.28%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL  P+DLPLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP       TT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. NCBI nr
Match: XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 9.9e-86
Identity = 178/195 (91.28%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. NCBI nr
Match: XP_022978293.1 (high mobility group B protein 13-like [Cucurbita maxima])

HSP 1 Score: 315.1 bits (806), Expect = 5.1e-82
Identity = 168/195 (86.15%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQ LH PLA+P DLPLKSGRRPLQPKNSLPNP+P+VAK+IKSKPERIQISL  DANKEN+
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PPIH    A  AS+ESCDLSLADELNAVKRKLERLRL+ ERTEQML+ERD++LELRMKEL
Sbjct: 61  PPIH----AKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEE
Sbjct: 121 LQRSKEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 191

[Close]

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.3e-87
Identity = 179/195 (91.79%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL SP+D+PLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL
Match: A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.8e-86
Identity = 178/195 (91.28%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL  P+DLPLKSGRRPLQPKNSLPNP+PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP       TT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.8e-86
Identity = 178/195 (91.28%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.8e-86
Identity = 178/195 (91.28%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQTLHHPL SP+D+PLKSGRRPLQPKNSLPN +PSVAKIIKSKPE IQISLSGDANKEN+
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PP      ATT SIESCDLSLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 189

[Close]

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL
Match: A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 168/195 (86.15%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 1   MQTLHHPLASPQDLPLKSGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENN 60
           MQ LH PLA+P DLPLKSGRRPLQPKNSLPNP+P+VAK+IKSKPERIQISL  DANKEN+
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 61  PPIHPAATATTASIESCDLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
           PPIH    A  AS+ESCDLSLADELNAVKRKLERLRL+ ERTEQML+ERD++LELRMKEL
Sbjct: 61  PPIH----AKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
           LQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEE
Sbjct: 121 LQRSKEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEE 180

Query: 181 SVGENSSLDSAEFVT 196
           SVGENSSLDS+EFVT
Sbjct: 181 SVGENSSLDSSEFVT 191

[Close]

BLAST of Clc04G06680.2 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-22
Identity = 73/181 (40.33%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESC 77
           SGR+ LQP+N    P      +     E+++ +L+ +                     S 
Sbjct: 4   SGRKALQPRNIYQTPKEDAFFVKPKAAEKLKENLNLET--------------------SI 63

Query: 78  DLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRL 137
           D SLA+EL+A K+KLERLR D E TE++L+ERD  ++L M  LLQR + Q+ LE++VDRL
Sbjct: 64  DASLAEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRL 123

Query: 138 FRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSAEFVTEK 197
           FRLKEL +Y  +ISPIRSLR KE+++      F       GEE   E SS++ A    E+
Sbjct: 124 FRLKELHAYSSKISPIRSLRAKEQQEKMRRFTFA------GEEQPDEESSVEIANGPIEE 158

Query: 198 E 199
           E
Sbjct: 184 E 158

[Close]

BLAST of Clc04G06680.2 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 9.1e-21
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNPLPSVAKIIKSKPERIQISLSGDANKENNPPIHPAATATTASIESC 77
           SGR+ LQP+N    P      +     E+++ +L+ +                     S 
Sbjct: 4   SGRKALQPRNIYQTPKEDAFFVKPKAAEKLKENLNLET--------------------SI 63

Query: 78  DLSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKELLQRSQEQRDLEMEVDRL 137
           D SLA+EL+A K+KLERLR D E TE++L+ERD  ++L M  LLQR + Q+ LE++VDRL
Sbjct: 64  DASLAEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRL 123

Query: 138 FRLKELRSYCMRISPIRSLREKEREK 164
           FRLKEL +Y  +ISPIRSLR KE+++
Sbjct: 124 FRLKELHAYSSKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:

BLAST of Clc04G06680.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883293.1	1.3e-90	94.87	uncharacterized protein LOC120074285 [Benincasa hispida]	[more]
KAA0025412.1	6.9e-87	91.79	high mobility group B protein 6 [Cucumis melo var. makuwa]	[more]
XP_004142680.1	5.8e-86	91.28	high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote...	[more]
XP_008463266.1	9.9e-86	91.28	PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil...	[more]
XP_022978293.1	5.1e-82	86.15	high mobility group B protein 13-like [Cucurbita maxima]	[more]

BLAST of Clc04G06680.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G06680.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJQ2	3.3e-87	91.79	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0L063	2.8e-86	91.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1	[more]
A0A5D3CEI7	4.8e-86	91.28	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ78	4.8e-86	91.28	high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=...	[more]
A0A6J1ISM0	2.5e-82	86.15	high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832...	[more]

BLAST of Clc04G06680.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01910.1	3.7e-22	40.33	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac...	[more]
AT5G01910.2	9.1e-21	43.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	PANTHER	PTHR36790	MYELIN TRANSCRIPTION FACTOR	coord: 1..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc04G06680	Clc04G06680	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G06680.2-exon	Clc04G06680.2-exon-ClcChr04:20041589..20042197	exon
Clc04G06680.2-exon	Clc04G06680.2-exon-ClcChr04:20042284..20042352	exon
Clc04G06680.2-exon	Clc04G06680.2-exon-ClcChr04:20042433..20042505	exon
Clc04G06680.2-exon	Clc04G06680.2-exon-ClcChr04:20042578..20042687	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G06680.2-five_prime_utr	Clc04G06680.2-five_prime_utr-ClcChr04:20041589..20041753	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G06680.2-cds	Clc04G06680.2-cds-ClcChr04:20041754..20042197	CDS
Clc04G06680.2-cds	Clc04G06680.2-cds-ClcChr04:20042284..20042352	CDS
Clc04G06680.2-cds	Clc04G06680.2-cds-ClcChr04:20042433..20042505	CDS
Clc04G06680.2-cds	Clc04G06680.2-cds-ClcChr04:20042578..20042687	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc04G06680.2	Clc04G06680.2-protein	polypeptide