Clc03G00610.2 (mRNA) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCCATTGTAAGCAAGAAGAAGAAATTGAAATAAATGAGCCCAAAAAATCAAGCAAACTGTAATAGCTTGGCTTCTCCTTTAGCCATTTATTAAAAAAGAAGAACAAAAGCACAAAATCAAAGGAGAATGCCAAAGGAAGAAGATGAAGAATTGGCTATGGAGATCAATTGCTTGAAAAAAGAATTGGAAATTTCTCTACAAAAATCAAATTTTCTCGAGAAAGAAAATCAAGAATTGAGACAAGAATTGGGTCGATTGAAATCCCAGATTCAGTCTTTAAAAGCTCAAAACAATGAGAGAAAATCTATTCTCTGGAAGAAATTCCACAGCTCCACGGACGTCGCCGTCGTCAGAACTGACTCGCCGCAGCCCATTCCGGCAGCGGCGGTGGGTGATAAACGCGAGACGACCAGATCGCAGAAACAGAGTAGTTGGGTTGATGTGAAAGAGAATCTGAGAATGACGGCGGCACCGGCATCGGCGCCGCCACCTCCGCCGCCACTTCCGACGAAGCTGCTGGGAGGATCGAAGGCAGTGCGGCGAGTTCCGGAAGTGTTGGAGTTGTACCGTACGCTGACGAAAAGGGATGCACAGATGGAAAATAAGGTCAAACACGGCGGAGTTCCGGCAGTGGCGTTCACCAAAAACATGATCGGCGAAATTGAAAATCGATCAGCCTATCTCTCGGCGGTATGTGTTTATACTTTACGGATGTTTATGGTGTGACATTCTAAAAATCTCTCAAAACAATAACAAATTGAATTTTATAATTGATAGAGTTCTAAACTTTTAACTTACTCGAGTATGTTTATGAATGGTAGAAAAAATCCAGTACATTAGCGGTTTATTAAGGAGACAAAATATAAATTTTATAAATTTATTACACATATTTGAAGTTTAACCAAAATTTTAACATTTTATAAGTTGATATGGTACCACAATTCAAACTTAGAAGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAATGTGTGGGAGATAAGAGAATTGAATTTCTAGTCTCAAGATTGATAGTACACAGTTCCAATTGAACTATACTCATAGCTCAAATTTAGAATATTTAAAATATAAAAACTGTCTTCTAAAGGTAATATATTTTTTTCTTTTAAATCACTCATTTGTTCTGAGTAAACTACCAATAATTTGAAAATTGTCTTCAAAATTTTAAAAAATGAAAGACCAAATTGTGAATTGACTAAAAGATTAGAGTGGAAACGCATGGTAGATAAAATCAGAGGTGGAAACACATGGAGAGTTCGTGAACTGGTTGATCAAAGAAGTGGAATCGACAGCACCAAAAGACATATTAGAGGTAGAGAGGTTTGTGAAGTGGCTGGACAGGAAGTTGGCATCGCTGGTGGACGAGAGGGCGGTGCTGAAGCACTTCCCACGGTGGCCAGAAGCGAAAGCAGATGCATTGCGAGAGGCGGCATTTAGCTATAGAGACTTAAAGAGCTTGGAGAGTGAAGTGTGTATGTTCAGGGACAATCCAAAGGAGGAGATGAATGTGGTGTTAAAGAGGGCTCAAGCGTTGCAAGACAGGCGAGCATGTACAATCAATCTGTTGTTGTGTGATGTTTGTTTTGGTAAACTTGATTTCATTGATGAATTATTACAAGTTTTTTGTTTGAAATGTGCAGGCTAGAGCAAAGCGTCAGTAACATGGAGAGGACAAGGGAGTTTAATTGTAAGAAGTACCAAGGTTTTCATATCCCCTACCAATGGATGTTCGATTCCGCTTTGCCCGCTCAGGTATGTAACGACTAAATAAAATACTTATTACCATCTCAAAGATCGTTGCTTCAATCTTCCACAACACAACATAACGATTGATAGAAAATGTAATTAAACATATGTTTAGATTGACATTCTAAGCTCCTGAAAAGTCTAACCAAACCAACTCCATGTTATAAATTTAGATACTCAACTTTTAAAGTTTTTGTCTATTTAATCCAACGAACAAAATTGTAAAGTATAATCACCATCATTTTTATATTTAAAATTCATAAACGTAATAGATGTAGAGTTTAAAATTTAGAATTCCATAAAATATAAACTCAAATTTATACATAATCCAACAATTAATTTATAAATTAAAATTTGCAAAGAATCTATAACATACAAAACCTCACATGTACTGATAGTTAAAAAAAACTCATTAGACCATTTGTAAAATTTAGAAAACAATTAGATACAAATCCCTCCCAGAACAAACTTGTAATTTAAAAAAAAAAAAAACGTACAACTAAATATTTTTAAAATCTTTTAAAATTAAAAAAAAAAACAATATAAAATTTAAAGACAAAACACCCAAAACCAAACTGGAATGAAATTAAAGGCAACTTTGGATTAACCGTGTTTTGGGGCAACAACCATTTTGAAAGTGAGTGTTTAACCAAAAATTACACTTACTAAGAAAAAGAAAATCATCAGTTTCCTACATCGTTAAGAATGAGAGTAACAAAAAGCCCTATCTCGGCCTCTTTGGTTGCAGATGAAGTTGAGCTCATTGAGGCTGGCGAAGGAATACATGATAAGGATAACAAGAGAACTAGGATCAAATGAAACCCCACAAGCAGAAAACCTTTTCCTTCAAGGAGTTCGCTTCGCTTACAGGGTTCATCAGGTAAAGCAGAATGATTTACTAATCCAACCACATTTTTCGACAATGACTAACCACTCAGAACCCTTTTCAGTACGCAGGTGGTTTCGATTCAGACGCTATACTGGCTTTTGAAGGACTCAAGAAAGCTGGGCTGAGTAGTCAAAGAAAGTAGGCTTCTTCTTGATTATAAATTATAGGGAATGAATCTTGTTGGTGGCTGTAGCCAACTCTAATGCAGAGCACATTCAACTAGATTGATGTAATACAAATGCTTGAATGGATGTTGTATACATAATCAATCCTATTGCAACTTATACAAACAATATCAAGGAGAATGGCATATCAGCTTAACTACACCTAGCTCTATAAAAAAGAACTAATGAAAAAGATAAAACTCCAAGAGAAACCATCCAATGGGTCCTAACTAAAATATGGAGAGATCGGTTTTCACTAGAACAAAGTTTCTCTTCTTCTATAATGTGGTATCGGGATTCAACCGCCACATATCCAGGCATCCTAATGCCTACATTTTCTTTAATTGAGCTGTAGAAAACTTCCCCCAAAAACTCCATATTCCACCACTTACAGAATGGGTCTCTAGAATTAATAGCTGGCCAAGGATTTCTTTCTCGAAAACAAGCAAAGCTAGATAAGATGAACTTGATGTTTCGGAAAAATCACCAAACAAAATATTACAACCATGACCAACAAGAGTATTTTAATCAAAATGCAGACCAATGCAATAATGAATCATTGAGAAAAGGAGACCCATCTAAAAGGCCTACTCATCGCAAGTTTATCTGTCATACAGTCTCCAATCACCAACTACACTCCTAAATTTAAGTACTTCCAGAAGATGAACAATGGCTCATGTTTAAAGAGAATAGAGAAAGCTAAGTAATGGTATTCATTCAGGAAGGCAAAAGCTAATTAATTAGACTATTGCATCTTTGAAATGGCAATCATTAGAACAAATATATAGCATAGAAATCACTAGATAAAAACTGTAAAGCTGGAAAACCAGTTCTCGATTAAAGACAACAAAATGTGTCGATCACAAAGCAATTTAAAAACAATGCAAAACGGTTGAAAACTAAGATAACATAAAGAAATCTAAACAGTAACCAAAACCCTAGGTTGGAAACCATCCCTAAGAAAACGGTCGCTACTTCGATCTCTGCCTCATCTTTCGGCGCTTTCTCTTCAACCTCCTCATTCTCTTCTTCTTCCACTGCCAGGAAACGAAAAAAAAAACAAAATGTCAGAGCCAATGAAGCATCTCGAAAAAGATGTTAAACCTGAATACAAGTTGAATCTATGGATGAATTTTGACAACAATTACCTTAGCTCTCATGGCGACGCTGCGAAAAAAGTTTGAGTGCTGTCTGTAAAGTGAGCGTCCTCAAATACAGACGAACGGCGGAGGGAAGAAGGCTGGAGACAGTAGAATC CTTCCATTGTAAGCAAGAAGAAGAAATTGAAATAAATGAGCCCAAAAAATCAAGCAAACTGTAATAGCTTGGCTTCTCCTTTAGCCATTTATTAAAAAAGAAGAACAAAAGCACAAAATCAAAGGAGAATGCCAAAGGAAGAAGATGAAGAATTGGCTATGGAGATCAATTGCTTGAAAAAAGAATTGGAAATTTCTCTACAAAAATCAAATTTTCTCGAGAAAGAAAATCAAGAATTGAGACAAGAATTGGGTCGATTGAAATCCCAGATTCAGTCTTTAAAAGCTCAAAACAATGAGAGAAAATCTATTCTCTGGAAGAAATTCCACAGCTCCACGGACGTCGCCGTCGTCAGAACTGACTCGCCGCAGCCCATTCCGGCAGCGGCGGTGGGTGATAAACGCGAGACGACCAGATCGCAGAAACAGAGTAGTTGGGTTGATGTGAAAGAGAATCTGAGAATGACGGCGGCACCGGCATCGGCGCCGCCACCTCCGCCGCCACTTCCGACGAAGCTGCTGGGAGGATCGAAGGCAGTGCGGCGAGTTCCGGAAGTGTTGGAGTTGTACCGTACGCTGACGAAAAGGGATGCACAGATGGAAAATAAGGTCAAACACGGCGGAGTTCCGGCAGTGGCGTTCACCAAAAACATGATCGGCGAAATTGAAAATCGATCAGCCTATCTCTCGGCGATAAAATCAGAGGTGGAAACACATGGAGAGTTCGTGAACTGGTTGATCAAAGAAGTGGAATCGACAGCACCAAAAGACATATTAGAGGTAGAGAGGTTTGTGAAGTGGCTGGACAGGAAGTTGGCATCGCTGGTGGACGAGAGGGCGGTGCTGAAGCACTTCCCACGGTGGCCAGAAGCGAAAGCAGATGCATTGCGAGAGGCGGCATTTAGCTATAGAGACTTAAAGAGCTTGGAGAGTGAAGTGTGTATGTTCAGGGACAATCCAAAGGAGGAGATGAATGTGGTGTTAAAGAGGGCTCAAGCGTTGCAAGACAGGCGAGCATGTACAATCAATCTGTTGTTGCTAGAGCAAAGCGTCAGTAACATGGAGAGGACAAGGGAGTTTAATTGTAAGAAGTACCAAGGTTTTCATATCCCCTACCAATGGATGTTCGATTCCGCTTTGCCCGCTCAGATGAAGTTGAGCTCATTGAGGCTGGCGAAGGAATACATGATAAGGATAACAAGAGAACTAGGATCAAATGAAACCCCACAAGCAGAAAACCTTTTCCTTCAAGGAGTTCGCTTCGCTTACAGGGTTCATCAGTACGCAGGTGGTTTCGATTCAGACGCTATACTGGCTTTTGAAGGACTCAAGAAAGCTGGGCTGAGTAGTCAAAGAAAGTAGGCTTCTTCTTGATTATAAATTATAGGGAATGAATCTTGTTGGTGGCTGTAGCCAACTCTAATGCAGAGCACATTCAACTAGATTGATGTAATACAAATGCTTGAATGGATGTTGTATACATAATCAATCCTATTGCAACTTATACAAACAATATCAAGGAGAATGGCATATCAGCTTAACTACACCTAGCTCTATAAAAAAGAACTAATGAAAAAGATAAAACTCCAAGAGAAACCATCCAATGGGTCCTAACTAAAATATGGAGAGATCGGTTTTCACTAGAACAAAGTTTCTCTTCTTCTATAATGTGGTATCGGGATTCAACCGCCACATATCCAGGCATCCTAATGCCTACATTTTCTTTAATTGAGCTGTAGAAAACTTCCCCCAAAAACTCCATATTCCACCACTTACAGAATGGGTCTCTAGAATTAATAGCTGGCCAAGGATTTCTTTCTCGAAAACAAGCAAAGCTAGATAAGATGAACTTGATGTTTCGGAAAAATCACCAAACAAAATATTACAACCATGACCAACAAGAGTATTTTAATCAAAATGCAGACCAATGCAATAATGAATCATTGAGAAAAGGAGACCCATCTAAAAGGCCTACTCATCGCAAGTTTATCTGTCATACAGTCTCCAATCACCAACTACACTCCTAAATTTAAGTACTTCCAGAAGATGAACAATGGCTCATGTTTAAAGAGAATAGAGAAAGCTAAGTAATGGTATTCATTCAGGAAGGCAAAAGCTAATTAATTAGACTATTGCATCTTTGAAATGGCAATCATTAGAACAAATATATAGCATAGAAATCACTAGATAAAAACTGTAAAGCTGGAAAACCAGTTCTCGATTAAAGACAACAAAATGTGTCGATCACAAAGCAATTTAAAAACAATGCAAAACGGTTGAAAACTAAGATAACATAAAGAAATCTAAACAGTAACCAAAACCCTAGGTTGGAAACCATCCCTAAGAAAACGGTCGCTACTTCGATCTCTGCCTCATCTTTCGGCGCTTTCTCTTCAACCTCCTCATTCTCTTCTTCTTCCACTTAGCTCTCATGGCGACGCTGCGAAAAAAGTTTGAGTGCTGTCTGTAAAGTGAGCGTCCTCAAATACAGACGAACGGCGGAGGGAAGAAGGCTGGAGACAGTAGAATC ATGCCAAAGGAAGAAGATGAAGAATTGGCTATGGAGATCAATTGCTTGAAAAAAGAATTGGAAATTTCTCTACAAAAATCAAATTTTCTCGAGAAAGAAAATCAAGAATTGAGACAAGAATTGGGTCGATTGAAATCCCAGATTCAGTCTTTAAAAGCTCAAAACAATGAGAGAAAATCTATTCTCTGGAAGAAATTCCACAGCTCCACGGACGTCGCCGTCGTCAGAACTGACTCGCCGCAGCCCATTCCGGCAGCGGCGGTGGGTGATAAACGCGAGACGACCAGATCGCAGAAACAGAGTAGTTGGGTTGATGTGAAAGAGAATCTGAGAATGACGGCGGCACCGGCATCGGCGCCGCCACCTCCGCCGCCACTTCCGACGAAGCTGCTGGGAGGATCGAAGGCAGTGCGGCGAGTTCCGGAAGTGTTGGAGTTGTACCGTACGCTGACGAAAAGGGATGCACAGATGGAAAATAAGGTCAAACACGGCGGAGTTCCGGCAGTGGCGTTCACCAAAAACATGATCGGCGAAATTGAAAATCGATCAGCCTATCTCTCGGCGATAAAATCAGAGGTGGAAACACATGGAGAGTTCGTGAACTGGTTGATCAAAGAAGTGGAATCGACAGCACCAAAAGACATATTAGAGGTAGAGAGGTTTGTGAAGTGGCTGGACAGGAAGTTGGCATCGCTGGTGGACGAGAGGGCGGTGCTGAAGCACTTCCCACGGTGGCCAGAAGCGAAAGCAGATGCATTGCGAGAGGCGGCATTTAGCTATAGAGACTTAAAGAGCTTGGAGAGTGAAGTGTGTATGTTCAGGGACAATCCAAAGGAGGAGATGAATGTGGTGTTAAAGAGGGCTCAAGCGTTGCAAGACAGGCGAGCATGTACAATCAATCTGTTGTTGCTAGAGCAAAGCGTCAGTAACATGGAGAGGACAAGGGAGTTTAATTGTAAGAAGTACCAAGGTTTTCATATCCCCTACCAATGGATGTTCGATTCCGCTTTGCCCGCTCAGATGAAGTTGAGCTCATTGAGGCTGGCGAAGGAATACATGATAAGGATAACAAGAGAACTAGGATCAAATGAAACCCCACAAGCAGAAAACCTTTTCCTTCAAGGAGTTCGCTTCGCTTACAGGGTTCATCAGTACGCAGGTGGTTTCGATTCAGACGCTATACTGGCTTTTGAAGGACTCAAGAAAGCTGGGCTGAGTAGTCAAAGAAAGTAG MPKEEDEELAMEINCLKKELEISLQKSNFLEKENQELRQELGRLKSQIQSLKAQNNERKSILWKKFHSSTDVAVVRTDSPQPIPAAAVGDKRETTRSQKQSSWVDVKENLRMTAAPASAPPPPPPLPTKLLGGSKAVRRVPEVLELYRTLTKRDAQMENKVKHGGVPAVAFTKNMIGEIENRSAYLSAIKSEVETHGEFVNWLIKEVESTAPKDILEVERFVKWLDRKLASLVDERAVLKHFPRWPEAKADALREAAFSYRDLKSLESEVCMFRDNPKEEMNVVLKRAQALQDRRACTINLLLLEQSVSNMERTREFNCKKYQGFHIPYQWMFDSALPAQMKLSSLRLAKEYMIRITRELGSNETPQAENLFLQGVRFAYRVHQYAGGFDSDAILAFEGLKKAGLSSQRK Homology
BLAST of Clc03G00610.2 vs. NCBI nr
Match: XP_038896069.1 (protein CHUP1, chloroplastic [Benincasa hispida]) HSP 1 Score: 661.8 bits (1706), Expect = 3.9e-186 Identity = 349/410 (85.12%), Postives = 364/410 (88.78%), Query Frame = 0
BLAST of Clc03G00610.2 vs. NCBI nr
Match: XP_011658693.1 (protein CHUP1, chloroplastic isoform X1 [Cucumis sativus] >KGN65828.1 hypothetical protein Csa_023225 [Cucumis sativus]) HSP 1 Score: 661.0 bits (1704), Expect = 6.7e-186 Identity = 347/411 (84.43%), Postives = 364/411 (88.56%), Query Frame = 0
BLAST of Clc03G00610.2 vs. NCBI nr
Match: XP_008457349.1 (PREDICTED: protein CHUP1, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 657.9 bits (1696), Expect = 5.7e-185 Identity = 349/411 (84.91%), Postives = 364/411 (88.56%), Query Frame = 0
BLAST of Clc03G00610.2 vs. NCBI nr
Match: XP_011658695.1 (protein CHUP1, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 617.5 bits (1591), Expect = 8.5e-173 Identity = 324/385 (84.16%), Postives = 340/385 (88.31%), Query Frame = 0
BLAST of Clc03G00610.2 vs. NCBI nr
Match: XP_008457350.1 (PREDICTED: protein CHUP1, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 612.8 bits (1579), Expect = 2.1e-171 Identity = 325/385 (84.42%), Postives = 339/385 (88.05%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy Swiss-Prot
Match: Q9LI74 (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHUP1 PE=1 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 1.5e-63 Identity = 139/296 (46.96%), Postives = 190/296 (64.19%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy TrEMBL
Match: A0A0A0LVK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532360 PE=4 SV=1) HSP 1 Score: 661.0 bits (1704), Expect = 3.3e-186 Identity = 347/411 (84.43%), Postives = 364/411 (88.56%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy TrEMBL
Match: A0A1S3C4V9 (protein CHUP1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497059 PE=4 SV=1) HSP 1 Score: 657.9 bits (1696), Expect = 2.8e-185 Identity = 349/411 (84.91%), Postives = 364/411 (88.56%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy TrEMBL
Match: A0A1S3C5E9 (protein CHUP1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497059 PE=4 SV=1) HSP 1 Score: 612.8 bits (1579), Expect = 1.0e-171 Identity = 325/385 (84.42%), Postives = 339/385 (88.05%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy TrEMBL
Match: A0A6J1K8G4 (protein CHUP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493194 PE=4 SV=1) HSP 1 Score: 603.6 bits (1555), Expect = 6.2e-169 Identity = 326/413 (78.93%), Postives = 350/413 (84.75%), Query Frame = 0
BLAST of Clc03G00610.2 vs. ExPASy TrEMBL
Match: A0A6J1G8X0 (protein CHUP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452021 PE=4 SV=1) HSP 1 Score: 592.0 bits (1525), Expect = 1.9e-165 Identity = 321/412 (77.91%), Postives = 345/412 (83.74%), Query Frame = 0
BLAST of Clc03G00610.2 vs. TAIR 10
Match: AT1G07120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). ) HSP 1 Score: 352.1 bits (902), Expect = 6.2e-97 Identity = 193/402 (48.01%), Postives = 267/402 (66.42%), Query Frame = 0
BLAST of Clc03G00610.2 vs. TAIR 10
Match: AT4G18570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 259.6 bits (662), Expect = 4.2e-69 Identity = 146/298 (48.99%), Postives = 196/298 (65.77%), Query Frame = 0
BLAST of Clc03G00610.2 vs. TAIR 10
Match: AT3G25690.1 (Hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 245.0 bits (624), Expect = 1.1e-64 Identity = 139/296 (46.96%), Postives = 190/296 (64.19%), Query Frame = 0
BLAST of Clc03G00610.2 vs. TAIR 10
Match: AT3G25690.2 (Hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 245.0 bits (624), Expect = 1.1e-64 Identity = 139/296 (46.96%), Postives = 190/296 (64.19%), Query Frame = 0
BLAST of Clc03G00610.2 vs. TAIR 10
Match: AT3G25690.3 (Hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 245.0 bits (624), Expect = 1.1e-64 Identity = 139/296 (46.96%), Postives = 190/296 (64.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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