Cla97C09G161980.1 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C09G161980.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr09: 84516 .. 84894 (+)
Sequence length216
RNA-Seq ExpressionCla97C09G161980.1
SyntenyCla97C09G161980.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCAGAGGTGAAACAAAATCCGCATGAAAACCAACAAAAAAAATATTAACAGTAGCTCTCAATAAAAGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATGGTTTCCTCTGCTCTTCTTTCATTAAACCATACAAAGCTGAACCGTATGCTGTAGAAATCAGGTTCCACTCCGACCTCAAATCCATTCCTGTAGCAACCCGCTTACCCTTTTTCTTTTTCTCTTATCAATACGGCTTCTATGGCGTTCGTTTTGAGTTTACTTGGTTCGTTCTGAATCCCCACAAGATGTTTTGGAGATTCGGTGTGGTTCTAGTCAACCAGCACCATGAGGATCGGCGACACATGGCGATTTCCGAGGCCTAA

mRNA sequence

ATGGAAGCTCAGAGGTTCCACTCCGACCTCAAATCCATTCCTGTAGCAACCCGCTTACCCTTTTTCTTTTTCTCTTATCAATACGGCTTCTATGGCGTTCGTTTTGAGTTTACTTGGTTCGTTCTGAATCCCCACAAGATGTTTTGGAGATTCGGTGTGGTTCTAGTCAACCAGCACCATGAGGATCGGCGACACATGGCGATTTCCGAGGCCTAA

Coding sequence (CDS)

ATGGAAGCTCAGAGGTTCCACTCCGACCTCAAATCCATTCCTGTAGCAACCCGCTTACCCTTTTTCTTTTTCTCTTATCAATACGGCTTCTATGGCGTTCGTTTTGAGTTTACTTGGTTCGTTCTGAATCCCCACAAGATGTTTTGGAGATTCGGTGTGGTTCTAGTCAACCAGCACCATGAGGATCGGCGACACATGGCGATTTCCGAGGCCTAA

Protein sequence

MEAQRFHSDLKSIPVATRLPFFFFSYQYGFYGVRFEFTWFVLNPHKMFWRFGVVLVNQHHEDRRHMAISEA
Homology
[Close]
BLAST of Cla97C09G161980.1 vs. NCBI nr
Match: KAG7025828.1 (hypothetical protein SDJN02_12326, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 30 FYGVR-FEFTWFVLNPHKMFWRFGVVLVNQHHEDRRH 66
          FYGVR  E    VLNPHKMFWR GVVLV+QHHEDRR+
Sbjct: 2  FYGVRSIELCLLVLNPHKMFWRLGVVLVDQHHEDRRY 38

The following BLAST results are available for this feature:
BLAST of Cla97C09G161980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025828.13.4e-0575.68hypothetical protein SDJN02_12326, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C09G161980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C09G161980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C09G161980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C09G161980Cla97C09G161980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G161980.1-exonCla97C09G161980.1-exon-Cla97Chr09:84516..84529exon
Cla97C09G161980.1-exonCla97C09G161980.1-exon-Cla97Chr09:84693..84894exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G161980.1-cdsCla97C09G161980.1-cds-Cla97Chr09:84516..84529CDS
Cla97C09G161980.1-cdsCla97C09G161980.1-cds-Cla97Chr09:84693..84894CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C09G161980.1Cla97C09G161980.1-proteinpolypeptide