ClCG11G017820.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G017820.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	30S ribosomal protein S20, chloroplastic-like
Location	CG_Chr11: 30993219 .. 30997660 (+)
Sequence length	851
RNA-Seq Expression	ClCG11G017820.1
Synteny	ClCG11G017820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAACTCTGCTTCCAGTGGATAAAGTGCCAACGAAGGAGCACAAGAGCCAAACCATTCTTCTTCTTCCACCTCTTGAGCTTTTCTTTTCAAGAATCCCCCACTCAGAAATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGTGAGTTCTTATGGGTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGAAGTATCGAATTGCTAGACTTACTTTTGTCCATTTTCGTACAGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTACCTAATTTTGGCTGGTTTGTACGCATTGGAATATATTAAAATCTATTAAGAATGATGTACTCCCGATATCATTTTTTCTCGGAATATTATTATTATTTTGGATAAGAACTAATTTCACTGATGGTATGAATTTACAAAAGAATGGGAAAATCCCCAAAGGAGAGATTGCAAATGACCATTACAGTTTGAAATGAGACTAGTATAGCTGTAGTGATGAAATAATGGAGAGAGCATTTACACTAAGTCGCTATAGCATAAAAACGAATTATAATGAGAGGGTTTTTCGTCTTGGAAGACTCTTCTATTCCTTTCTTGCCAAATGTTCCAGCATAACGCTCTAATGAAATTTTCCCATAAAAGCTTTGTCTCCTTTTGGAGCTTGTCATGGGTTTTGATGGCTTTCTTTTATAGCTCCCAAAGATAAAACTTCATCTTCTTTGGATAATGAACCTTCCGTTTCACATGATACAGAGACTAGGTTCCATCAATGGAGGGGGATAAATCATACAAAAAAGAGCTATTTGAAAAAAAGCTAGTGGGTTGGGTTCTAGCTTCCAAAGACCCCTGTCGGTCTGTTATGAAAGGAAACAGCAGCTAGAATGTGTAAAGGAGCTTCATATTCTCCAGTTTCAGCCTCTCTGATTCCTTCTCAATCTTCGGTTCCAATACCCAATGTTTGTGTTCCAAAAATCTTTTACAGGCCCACTCTTGCTGTGAGAAAGGGCAAAAATAAATGGGGATTGTGATGCAACGGGTTCATTCTCCAGCCAGATGTCTTACCAAAAAGAAACGTTTGATCCATCCCCAAGAACGTAGGAAGTTCTATCATGAATCAGAAAGCAATGCCTCATGATGGATCTCAGAGTATCATACTAGAAATGCTATTGGACTGAAACCAAACAGCCCAAGTCCTAACAGCTTCTCTGCTTGCCTAGAAACCTTATCTTTGGCACTGAAAAGTTAAAGCCGGTTTGATAACCATTTGGTTTTTGAAAATCGAGCATATAAACACTATTTTTACCAATTAGTTTCTTTATTTTGTTGTCTATATTTTCAGAGTGTTCTCAAACTCCAATCTAAGTTTTGAAAATTGAAACATATAGGTTCCTTTTGAAAAATTGGGAAGACACAAAGAAAGTCTAGGATTTTCAATGGAAAGGAAAAATCCCCAGGGGGTGTTCTTGAATCATCCATTTTCAATGCCCTTTTTGGTGTAAAAATATACAGCCCCTCAATAGTTACATTTTGAATTTCCTTGTATCTAATTGGAGGAATCTTTTGTAATCCTATTTATGGGCTCATTTTGTACTCTTTGTAAATTACATTCATCAATGAAATAGTTTCTTAAAAAAAATGGGAAGAAACAAGTATAAATTTCAATACAGAACGAAATCGTTAACAAACAAGCCATAGTTTTAAAAAAATAGTTTTTGTTCAGAATTTGGCTAAGAATCTTGATGTTTATTCAAGAAAGATGTTAAAGAATTTGTGAGAAAAACATCACAATCTTCAAAAACCAAAAACCAAATATTTATCAAATGGGTATAGAATTTTTAGGTAATTTTTATTTTAGACTGGTTTGTGCCTACTTTGTATGTACCTTTAGACAAACTGAGCTATATCAAAACTCAAGGGGTCAAGTACCTTTTTGTGTTCTTGAAGAGTTAAGATATAATTGTTTTTCTTAATAATGATTATTTTTATTTTTTTAGAAATAACTACTAGGGTCTCTCTAACCCTCTAAAGACTGTGTTATTTCTCTCTCCTCATATTTACAGACACACACGCAAGTACACATAGATAAGGCCAATGGTAGCTTGTTGGTTTGGATGCTTGATGTGAAAATCTGATCAGTAGAAATTCTTATTTTTCAGAAATGATTGTAAACTCTGCTCACCACTTAAAAAAAATACATGAAGATGACAATGGCTACTACAGGAAAATTTATGAGTAACCAAACTGATTTTATCATTTATAAAAGTTATCATTCAAGTTATAAGTTGGACTTTTGTTGTATATCAGATAGTGTAAACTATCAAGCATCCCAACTTGATGGACAATTTTAAAAGGACTAGAAAGAAAAGTCTGGTAAGTGGTAAAGTTGATCAAATATTCTTGTCCAGTAGAGATTGCTTCTGATTGGCCTGGGTAGGTTCTCTAGGTGGTTTTCATGTTGGTTATGACTGAAGTTTAACTAATTTCCTTCAAAAAACATTTCAGCCTCTCTCATAGAGTCTTAAACTTAGACCATTAAGGTGTTTGAATGCGCCTTTGGCTTAGGTGTGTAGATTTATTTGAATCTTTGGTTGTATCAACTTTCTTTGGATGAGTTATGCAACATGACTAACATCTTTTCCTGTTCTAATAATAAGTGGCCTTTGTGTTATCTGGTGGATCTTAGAGGTACCTAAGCTGTAAAATCTTGTGTGACCAATGATTAAAAGGATTTTGTTTCTTTTCTGGTTTCTCTAGGGCTAATTCTGTTTGCAAAGTTTCTTTGGTCATCCTTCCAAGAAAACATAAGCGATTTGGCAATGCTTCAGAGTTTTCTTCTGGGAAATTTGGTCAACAAGGAATGTGTTTTTGAGTTATGAAGGCAGCATTTGATCAAGGGAATTGGAAAATGTTCTACTTGAAATTTCTCCAAATTATTATATTTCTTTATCATTTCTTAACTTCTTGGTGCCAAGAGAGGCAGTAGGCAGACGGGATGGAGGGTGTTTCCCATTTATAATTAAGACTTCATCCTTTTCTTGTTTGAGCAGAAGAAAAGGTTGGCTTTCCTCGTTGTACCTACCAACTGGCAAAACTCTCCATATTTTTTTTAATTGAATCTCTAAAGAGATGCTGCTTTCTGATGCAATGGGTTGGTTTCTTTTTCATGGCTGATATCTGCTAAAGGACAGGACTAAAGCGTAATCTTCATATGGTTGCACAACACATCCTCTACATCCTTGCTTTTGCATTTTGTGAAGAAAAAGAGAAGATTTTCCGTTTCTTTCCAGAACTTGTCAGCATAATAATGACCTCTCCCTCTTACAATTCCAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGATGCTTTACCCCCAGTCTTTGCTGTTAATGGGGTTGAGGAATGAATAGGACTATCATTCTATTCTTTTTTGAGGTAGATAAATGACAACTTTTTTTTTTTCATGTATCTTTTACTTTTGTATTTAGTTCGAACCTTCCTTCTTCTATGTCTACAGTTGAAATTTCACTTCTATTTCATCTCCCCTCG

mRNA sequence

GCAAAACTCTGCTTCCAGTGGATAAAGTGCCAACGAAGGAGCACAAGAGCCAAACCATTCTTCTTCTTCCACCTCTTGAGCTTTTCTTTTCAAGAATCCCCCACTCAGAAATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGATGCTTTACCCCCAGTCTTTGCTGTTAATGGGGTTGAGGAATGAATAGGACTATCATTCTATTCTTTTTTGAGGTAGATAAATGACAACTTTTTTTTTTTCATGTATCTTTTACTTTTGTATTTAGTTCGAACCTTCCTTCTTCTATGTCTACAGTTGAAATTTCACTTCTATTTCATCTCCCCTCG

Coding sequence (CDS)

ATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGA

Protein sequence

MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKAQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAV

Homology

[Close]

BLAST of ClCG11G017820.1 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 169/183 (92.35%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAATA+SCF+LPSKFRNLSLNASSSCIP SPSS T R+L+FSSN SVSAFS+GCL++SKA
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of ClCG11G017820.1 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 166/184 (90.22%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]

BLAST of ClCG11G017820.1 vs. NCBI nr
Match: XP_023534903.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 164/184 (89.13%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCF+LPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PE QSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]

BLAST of ClCG11G017820.1 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 165/184 (89.67%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS + +SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]

BLAST of ClCG11G017820.1 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.8e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 8.3e-46
Identity = 111/178 (62.36%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MA  +  C ++ SK  NLS   SS+  P    +S+ + LTFS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QR   +SVVCE A   KADSAAKR RQAE RR+ NKARKSE+KTR++KV EALD LKKK 
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K +IK VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKA + G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot
Match: Q8YWL3 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot
Match: Q3M5D2 (30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.2e-77
Identity = 166/184 (90.22%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 165/184 (89.67%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS + +SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.8e-74
Identity = 157/183 (85.79%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA AI+CF+L SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of ClCG11G017820.1 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-47
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

The following BLAST results are available for this feature:

BLAST of ClCG11G017820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899721.1	3.4e-81	92.35	30S ribosomal protein S20, chloroplastic [Benincasa hispida]	[more]
XP_022976587.1	1.5e-76	90.22	30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3...	[more]
XP_023534903.1	1.3e-75	89.13	30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935732.1	2.2e-75	89.67	30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata]	[more]
XP_008463697.1	4.8e-75	86.89	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1...	[more]

BLAST of ClCG11G017820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82130	8.3e-46	62.36	30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P...	[more]
Q9ASV6	1.1e-45	60.66	30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2...	[more]
A7HJB0	4.8e-09	47.19	30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q8YWL3	4.8e-09	45.05	30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M5D2	4.8e-09	45.05	30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]

BLAST of ClCG11G017820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IG57	7.2e-77	90.22	30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F6F1	1.0e-75	89.67	30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7VMD2	2.3e-75	86.89	30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CJU9	2.3e-75	86.89	30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779...	[more]
A0A0A0KZK9	9.8e-74	85.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1	[more]

BLAST of ClCG11G017820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15190.1	7.7e-47	60.66	chloroplast 30S ribosomal protein S20, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..119
None	No IPR available	PANTHER	PTHR33398:SF5	30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC	coord: 1..182
IPR002583	Ribosomal protein S20	TIGRFAM	TIGR00029	TIGR00029	coord: 78..164 e-value: 3.0E-18 score: 64.1
IPR002583	Ribosomal protein S20	PFAM	PF01649	Ribosomal_S20p	coord: 79..165 e-value: 2.5E-23 score: 82.5
IPR002583	Ribosomal protein S20	PANTHER	PTHR33398	30S RIBOSOMAL PROTEIN S20	coord: 1..182
IPR002583	Ribosomal protein S20	HAMAP	MF_00500	Ribosomal_S20	coord: 73..168 score: 16.088276
IPR036510	Ribosomal protein S20 superfamily	GENE3D	1.20.58.110	Ribosomal protein S20	coord: 78..184 e-value: 3.2E-39 score: 135.4
IPR036510	Ribosomal protein S20 superfamily	SUPERFAMILY	46992	Ribosomal protein S20	coord: 79..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG11G017820	ClCG11G017820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G017820.1-exon	ClCG11G017820.1-exon-CG_Chr11:30993219..30993485	exon
ClCG11G017820.1-exon	ClCG11G017820.1-exon-CG_Chr11:30994026..30994192	exon
ClCG11G017820.1-exon	ClCG11G017820.1-exon-CG_Chr11:30997244..30997660	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G017820.1-five_prime_utr	ClCG11G017820.1-five_prime_utr-CG_Chr11:30993219..30993328	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G017820.1-cds	ClCG11G017820.1-cds-CG_Chr11:30993329..30993485	CDS
ClCG11G017820.1-cds	ClCG11G017820.1-cds-CG_Chr11:30994026..30994192	CDS
ClCG11G017820.1-cds	ClCG11G017820.1-cds-CG_Chr11:30997244..30997474	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G017820.1-three_prime_utr	ClCG11G017820.1-three_prime_utr-CG_Chr11:30997475..30997660	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG11G017820.1	ClCG11G017820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding