ClCG11G017820 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G017820
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description30S ribosomal protein S20, chloroplastic-like
LocationCG_Chr11: 30993219 .. 30997660 (+)
RNA-Seq ExpressionClCG11G017820
SyntenyClCG11G017820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAACTCTGCTTCCAGTGGATAAAGTGCCAACGAAGGAGCACAAGAGCCAAACCATTCTTCTTCTTCCACCTCTTGAGCTTTTCTTTTCAAGAATCCCCCACTCAGAAATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGTGAGTTCTTATGGGTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGAAGTATCGAATTGCTAGACTTACTTTTGTCCATTTTCGTACAGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTACCTAATTTTGGCTGGTTTGTACGCATTGGAATATATTAAAATCTATTAAGAATGATGTACTCCCGATATCATTTTTTCTCGGAATATTATTATTATTTTGGATAAGAACTAATTTCACTGATGGTATGAATTTACAAAAGAATGGGAAAATCCCCAAAGGAGAGATTGCAAATGACCATTACAGTTTGAAATGAGACTAGTATAGCTGTAGTGATGAAATAATGGAGAGAGCATTTACACTAAGTCGCTATAGCATAAAAACGAATTATAATGAGAGGGTTTTTCGTCTTGGAAGACTCTTCTATTCCTTTCTTGCCAAATGTTCCAGCATAACGCTCTAATGAAATTTTCCCATAAAAGCTTTGTCTCCTTTTGGAGCTTGTCATGGGTTTTGATGGCTTTCTTTTATAGCTCCCAAAGATAAAACTTCATCTTCTTTGGATAATGAACCTTCCGTTTCACATGATACAGAGACTAGGTTCCATCAATGGAGGGGGATAAATCATACAAAAAAGAGCTATTTGAAAAAAAGCTAGTGGGTTGGGTTCTAGCTTCCAAAGACCCCTGTCGGTCTGTTATGAAAGGAAACAGCAGCTAGAATGTGTAAAGGAGCTTCATATTCTCCAGTTTCAGCCTCTCTGATTCCTTCTCAATCTTCGGTTCCAATACCCAATGTTTGTGTTCCAAAAATCTTTTACAGGCCCACTCTTGCTGTGAGAAAGGGCAAAAATAAATGGGGATTGTGATGCAACGGGTTCATTCTCCAGCCAGATGTCTTACCAAAAAGAAACGTTTGATCCATCCCCAAGAACGTAGGAAGTTCTATCATGAATCAGAAAGCAATGCCTCATGATGGATCTCAGAGTATCATACTAGAAATGCTATTGGACTGAAACCAAACAGCCCAAGTCCTAACAGCTTCTCTGCTTGCCTAGAAACCTTATCTTTGGCACTGAAAAGTTAAAGCCGGTTTGATAACCATTTGGTTTTTGAAAATCGAGCATATAAACACTATTTTTACCAATTAGTTTCTTTATTTTGTTGTCTATATTTTCAGAGTGTTCTCAAACTCCAATCTAAGTTTTGAAAATTGAAACATATAGGTTCCTTTTGAAAAATTGGGAAGACACAAAGAAAGTCTAGGATTTTCAATGGAAAGGAAAAATCCCCAGGGGGTGTTCTTGAATCATCCATTTTCAATGCCCTTTTTGGTGTAAAAATATACAGCCCCTCAATAGTTACATTTTGAATTTCCTTGTATCTAATTGGAGGAATCTTTTGTAATCCTATTTATGGGCTCATTTTGTACTCTTTGTAAATTACATTCATCAATGAAATAGTTTCTTAAAAAAAATGGGAAGAAACAAGTATAAATTTCAATACAGAACGAAATCGTTAACAAACAAGCCATAGTTTTAAAAAAATAGTTTTTGTTCAGAATTTGGCTAAGAATCTTGATGTTTATTCAAGAAAGATGTTAAAGAATTTGTGAGAAAAACATCACAATCTTCAAAAACCAAAAACCAAATATTTATCAAATGGGTATAGAATTTTTAGGTAATTTTTATTTTAGACTGGTTTGTGCCTACTTTGTATGTACCTTTAGACAAACTGAGCTATATCAAAACTCAAGGGGTCAAGTACCTTTTTGTGTTCTTGAAGAGTTAAGATATAATTGTTTTTCTTAATAATGATTATTTTTATTTTTTTAGAAATAACTACTAGGGTCTCTCTAACCCTCTAAAGACTGTGTTATTTCTCTCTCCTCATATTTACAGACACACACGCAAGTACACATAGATAAGGCCAATGGTAGCTTGTTGGTTTGGATGCTTGATGTGAAAATCTGATCAGTAGAAATTCTTATTTTTCAGAAATGATTGTAAACTCTGCTCACCACTTAAAAAAAATACATGAAGATGACAATGGCTACTACAGGAAAATTTATGAGTAACCAAACTGATTTTATCATTTATAAAAGTTATCATTCAAGTTATAAGTTGGACTTTTGTTGTATATCAGATAGTGTAAACTATCAAGCATCCCAACTTGATGGACAATTTTAAAAGGACTAGAAAGAAAAGTCTGGTAAGTGGTAAAGTTGATCAAATATTCTTGTCCAGTAGAGATTGCTTCTGATTGGCCTGGGTAGGTTCTCTAGGTGGTTTTCATGTTGGTTATGACTGAAGTTTAACTAATTTCCTTCAAAAAACATTTCAGCCTCTCTCATAGAGTCTTAAACTTAGACCATTAAGGTGTTTGAATGCGCCTTTGGCTTAGGTGTGTAGATTTATTTGAATCTTTGGTTGTATCAACTTTCTTTGGATGAGTTATGCAACATGACTAACATCTTTTCCTGTTCTAATAATAAGTGGCCTTTGTGTTATCTGGTGGATCTTAGAGGTACCTAAGCTGTAAAATCTTGTGTGACCAATGATTAAAAGGATTTTGTTTCTTTTCTGGTTTCTCTAGGGCTAATTCTGTTTGCAAAGTTTCTTTGGTCATCCTTCCAAGAAAACATAAGCGATTTGGCAATGCTTCAGAGTTTTCTTCTGGGAAATTTGGTCAACAAGGAATGTGTTTTTGAGTTATGAAGGCAGCATTTGATCAAGGGAATTGGAAAATGTTCTACTTGAAATTTCTCCAAATTATTATATTTCTTTATCATTTCTTAACTTCTTGGTGCCAAGAGAGGCAGTAGGCAGACGGGATGGAGGGTGTTTCCCATTTATAATTAAGACTTCATCCTTTTCTTGTTTGAGCAGAAGAAAAGGTTGGCTTTCCTCGTTGTACCTACCAACTGGCAAAACTCTCCATATTTTTTTTAATTGAATCTCTAAAGAGATGCTGCTTTCTGATGCAATGGGTTGGTTTCTTTTTCATGGCTGATATCTGCTAAAGGACAGGACTAAAGCGTAATCTTCATATGGTTGCACAACACATCCTCTACATCCTTGCTTTTGCATTTTGTGAAGAAAAAGAGAAGATTTTCCGTTTCTTTCCAGAACTTGTCAGCATAATAATGACCTCTCCCTCTTACAATTCCAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGATGCTTTACCCCCAGTCTTTGCTGTTAATGGGGTTGAGGAATGAATAGGACTATCATTCTATTCTTTTTTGAGGTAGATAAATGACAACTTTTTTTTTTTCATGTATCTTTTACTTTTGTATTTAGTTCGAACCTTCCTTCTTCTATGTCTACAGTTGAAATTTCACTTCTATTTCATCTCCCCTCG

mRNA sequence

GCAAAACTCTGCTTCCAGTGGATAAAGTGCCAACGAAGGAGCACAAGAGCCAAACCATTCTTCTTCTTCCACCTCTTGAGCTTTTCTTTTCAAGAATCCCCCACTCAGAAATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGATGCTTTACCCCCAGTCTTTGCTGTTAATGGGGTTGAGGAATGAATAGGACTATCATTCTATTCTTTTTTGAGGTAGATAAATGACAACTTTTTTTTTTTCATGTATCTTTTACTTTTGTATTTAGTTCGAACCTTCCTTCTTCTATGTCTACAGTTGAAATTTCACTTCTATTTCATCTCCCCTCG

Coding sequence (CDS)

ATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGA

Protein sequence

MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKAQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAV
Homology
[Close]
BLAST of ClCG11G017820 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 169/183 (92.35%), Postives = 176/183 (96.17%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAATA+SCF+LPSKFRNLSLNASSSCIP SPSS T R+L+FSSN SVSAFS+GCL++SKA
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]
BLAST of ClCG11G017820 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 166/184 (90.22%), Postives = 177/184 (96.20%), Query Frame = 0 

Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]
BLAST of ClCG11G017820 vs. NCBI nr
Match: XP_023534903.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 164/184 (89.13%), Postives = 176/184 (95.65%), Query Frame = 0 

Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCF+LPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PE QSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]
BLAST of ClCG11G017820 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 165/184 (89.67%), Postives = 176/184 (95.65%), Query Frame = 0 

Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS + +SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]
BLAST of ClCG11G017820 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1 30S ribosomal protein S20 [Cucumis melo var. makuwa] >TYK27958.1 30S ribosomal protein S20 [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.8e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 8.3e-46
Identity = 111/178 (62.36%), Postives = 130/178 (73.03%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MA  +  C ++ SK  NLS   SS+  P    +S+ + LTFS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QR   +SVVCE A   KADSAAKR RQAE RR+ NKARKSE+KTR++KV EALD LKKK 
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0 

Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

[Close]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K +IK VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKA + G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match: Q8YWL3 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match: Q3M5D2 (30S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.2e-77
Identity = 166/184 (90.22%), Postives = 177/184 (96.20%), Query Frame = 0 

Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 165/184 (89.67%), Postives = 176/184 (95.65%), Query Frame = 0 

Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS + +SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKRARQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

[Close]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match: A0A0A0KZK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.8e-74
Identity = 157/183 (85.79%), Postives = 168/183 (91.80%), Query Frame = 0 

Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA AI+CF+L SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]
BLAST of ClCG11G017820 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-47
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0 

Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

The following BLAST results are available for this feature:
BLAST of ClCG11G017820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899721.13.4e-8192.3530S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
XP_022976587.11.5e-7690.2230S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_023534903.11.3e-7589.1330S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022935732.12.2e-7589.6730S ribosomal protein S20, chloroplastic-like [Cucurbita moschata][more]
XP_008463697.14.8e-7586.89PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo] >KAA0066811.1... [more]
BLAST of ClCG11G017820 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821308.3e-4662.3630S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV61.1e-4560.6630S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
A7HJB04.8e-0947.1930S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
Q8YWL34.8e-0945.0530S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
Q3M5D24.8e-0945.0530S ribosomal protein S20 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
BLAST of ClCG11G017820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IG577.2e-7790.2230S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6F11.0e-7589.6730S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5A7VMD22.3e-7586.8930S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CJU92.3e-7586.8930S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779... [more]
A0A0A0KZK99.8e-7485.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1[more]
BLAST of ClCG11G017820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.17.7e-4760.66chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..182
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 3.0E-18
score: 64.1
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 2.5E-23
score: 82.5
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..182
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 73..168
score: 16.088276
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 3.2E-39
score: 135.4
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G017820.1ClCG11G017820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding