ClCG10G009470.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G009470.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	classical arabinogalactan protein 1-like
Location	CG_Chr10: 21567020 .. 21567553 (-)
Sequence length	393
RNA-Seq Expression	ClCG10G009470.1
Synteny	ClCG10G009470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCGTCCTTTTGATGATCTGAGAGCAGTCGGATTTGATTCGTTCTCCGTGTCTGTCTATCTGAGTGATTTATTGTAGCATCTTACTGAGTACATTTTTTCTTGATTTTGTATCTGTTTTTTTTTTCTCCTCTTTTTTTTCACAGTTATTATCATTATTCTTCATTATCTGA

mRNA sequence

ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA

Coding sequence (CDS)

ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA

Protein sequence

MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVLYALLSLFFII

Homology

[Close]

BLAST of ClCG10G009470.1 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRS  AM+LVALLIGSAIAQSP ASP  SPSKSPSKAPSASPSVKSPKSSPAAAPTPS
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASP--SPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPPSTSP+TSPSP TSPATSPS ISSPPADAPAPSGNGAASI FS FGSVAVVL
Sbjct: 61  SLKSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVL 120

Query: 121 YALLSL 127
           Y ++ L
Sbjct: 121 YTVVLL 124

[Close]

BLAST of ClCG10G009470.1 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-28
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 118

Query: 121 YALL 125
           YA++
Sbjct: 121 YAIV 118

[Close]

BLAST of ClCG10G009470.1 vs. NCBI nr
Match: KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 9.1e-28
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRSL AM+LV+ LI SA AQ        SP++SPSKAPS SPSVKSPKSSPA APTPS
Sbjct: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPALAPTPS 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAPSGNGAASI FS  GS AV L
Sbjct: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 116

Query: 121 YALL 125
           YA++
Sbjct: 121 YAVV 116

[Close]

BLAST of ClCG10G009470.1 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR    M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120

Query: 121 YALLSLFFII 131
           YA+  +  I+
Sbjct: 121 YAIFGMDSIL 124

[Close]

BLAST of ClCG10G009470.1 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 4.5e-27
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR    M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SL+SPPSPP+ SPS SP    SP+ SPSSISSPPADAPAPSGN AASI  S FGSVA VL
Sbjct: 61  SLQSPPSPPAASPSLSP----SPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVL 120

Query: 121 YALL 125
           YA++
Sbjct: 121 YAIV 120

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 4   RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAA 63
           +SL  +LL ALLI SA+AQSPA +PS       SP+ SP K  AP+ +P V SP  SPAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGS 123
           A TP S  SPPSPP     T    A SPA SPS+IS  P +AP P+  GA S  F++FGS
Sbjct: 65  ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 118

Query: 121 YALL 125
           YA++
Sbjct: 121 YAIV 118

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.4e-28
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRSL AM+LV+ LI SA AQ        SP++SPSKAPS SPSVKSPKSSPA APTPS
Sbjct: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPALAPTPS 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAPSGNGAASI FS  GS AV L
Sbjct: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 116

Query: 121 YALL 125
           YA++
Sbjct: 121 YAVV 116

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 94/124 (75.81%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAI SL A++ V+  I SA AQSPAASPS SP+KSPSKAPS +    SPKSSPA APTPS
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPPS+SPSTSPSPA+SPA    SISSPPADAPAPSGNGAASI FS FGSVAV L
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPA----SISSPPADAPAPSGNGAASITFSVFGSVAVAL 116

Query: 121 YALL 125
           YA++
Sbjct: 121 YAVV 116

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MA R    M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAPSGN AASI  S FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 118

Query: 121 YALL 125
           +A++
Sbjct: 121 FAIV 118

[Close]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.0e-26
Identity = 96/124 (77.42%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 1   MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRS   M+LVALLIGSAIAQSPAASPS SP KSPSKAPSASPSVKSPKSSP AAPTP+
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
           S          SPSTSP    SPA SPSSISSPPADAPAPSG+GAASI FS FGSVAVVL
Sbjct: 61  S----------SPSTSP----SPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 109

Query: 121 YALL 125
           YA++
Sbjct: 121 YAVV 109

[Close]

BLAST of ClCG10G009470.1 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 4   RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAA 63
           +SL  +LL ALLI SA+AQSPA +PS       SP+ SP K  AP+ +P V SP  SPAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGS 123
           A TP S  SPPSPP     T    A SPA SPS+IS  P +AP P+  GA S  F++FGS
Sbjct: 65  ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124

The following BLAST results are available for this feature:

BLAST of ClCG10G009470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877310.1	6.9e-36	88.10	classical arabinogalactan protein 1 [Benincasa hispida]	[more]
XP_022942993.1	6.9e-28	76.61	classical arabinogalactan protein 1-like [Cucurbita moschata]	[more]
KAA0061155.1	9.1e-28	77.42	classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]	[more]
KAG7030900.1	1.2e-27	73.85	hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023542663.1	4.5e-27	75.00	classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG10G009470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCN5	4.0e-10	53.54	Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2...	[more]

BLAST of ClCG10G009470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW49	3.4e-28	76.61	classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7V5Q9	4.4e-28	77.42	Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KZB8	1.1e-26	75.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1	[more]
A0A6J1JSK4	3.1e-26	74.19	classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1E9Q3	7.0e-26	77.42	classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of ClCG10G009470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64310.1	2.8e-11	53.54	arabinogalactan protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..103
None	No IPR available	PANTHER	PTHR36321:SF2	CLASSICAL ARABINOGALACTAN PROTEIN 1	coord: 1..124
IPR044959	Classical arabinogalactan protein	PANTHER	PTHR36321	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 1..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G009470	ClCG10G009470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G009470.1-exon	ClCG10G009470.1-exon-CG_Chr10:21567020..21567046	exon
ClCG10G009470.1-exon	ClCG10G009470.1-exon-CG_Chr10:21567188..21567553	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G009470.1-cds	ClCG10G009470.1-cds-CG_Chr10:21567020..21567046	CDS
ClCG10G009470.1-cds	ClCG10G009470.1-cds-CG_Chr10:21567188..21567553	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G009470.1	ClCG10G009470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane