ClCG07G003970.2 (mRNA) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGACGATAGCATCCATTCGATCGGAGAAGCCAGACCTAGTGTCGTGCGATCTTGCTAGAAGCTCTCGATCTATGGTGTCGCAGATATTGACGGCGACGACGCTCGGGTTTGAGGAGGCAGACCGATTCGATGGTCCAGCTATAGTCGATCTGGCAAAAAACTCCCGATTCACGGTGTCTTGGATAGCAGCGGTGGTGGGGTTTAAGGTCAGTGACTACAGGTACCGGTCGACGGCGGCTTGGATGATGATGGCGGCGGCGGGTTTTAAACGACGGGAGCATTGGTAGATCTAGGATTTCTGTCCCTTGTAGTGGTTGGTTGTCATCGACGACGACTAGGGTTTTTAGGGTTTCATCACCATGCTCTAATACCATATTGAAAAAGAGGGAAGAGAAAAAGACACAAGGTTTACGTGGAAAACCCTAGTTCAGGGAGAAAAAGCCATGATACAATTTTTCTCTTTTTTATTAATTTGATACATTCAACTGTTACAAGGGAAGAAAATAAATAGAGACCCAAAACCATATAAGGAAAAAATATTAGAGAATATAAAAGGTAAAATACAAAATCTACAAGATTCCCAAATATCCTCTTTTATTTTCAACACTTAAATACTTTACGTTGTTAGTATTTTAGTCGACTGATATAATAAATATAAAGTATATCAGATATACTGCTAATATACATATTGATACACCAATAAAGTTAAATTTGGAATAATAAAAAACGAAAATCTGATTAATGCTTTTTTGCTACATTTGCAAATTTTGAAAAATCATTGCTAAATTTGTAATTTTAATAATGTTTTTTTTTTTTTTTTTTGCTATTTTTGCAAGTGGCTCAAATTTAATATTATGATTAAGGCTTATGATAGTACACAACAATAAATGTGTAAAAATTGAAAGGCATATTTGTAGCGATGTACATTTTCGCGAACTCCTCGTTTAGGCGAGAAAAATGGGGGAGAAAGTGGCAAAAAAAAGTTACTTATAGGCTAAACGAGGATGGGACGGAGAATGCATTCCTTGCCCTCGCCCCCACCCACATTCCACGTCCCCACCCCGTTAGCCTATTATTTATTTATTTATTATAATTATCTAATATTACGTTATTATTATATAAATATTAAATTTTTTTGTTTTAATGGTCAAGATAATGAATATTTTGAATTTAACATTTAAATTTAGATTATATATATATATATATAATCTGATTGGTAATTATTTGATTCTACAAAAGATTTGAGTAATTTCTCTATAAATTCAAATTCTCCTTGCGAAACTAATTATATAAAAAAATTAATTAAAAAATTTCCATCGTAATGATTTAAGTTAATTGATATATTAAATAAATAAATAAACAGAAAAATTTTCTATGGGAAACCTGATTTGCTTGGGAAATTTTGTTAGGATGAAGAATGAAATGGGGTGTAGAGGCGGGACTAAGAAGCATCTCGGGCCCCGCCCCGCCCCGCCCCATAGATATCTCTACATATATGACATCATTTACAACATCATTCATGTTAATTGACGTGATAATGAGTAATGAAAACTAATGTACGAAAATGAATTAGGTTAACAATTTTAAGGGCTCTATACATATAACCTAAATAAATATGTCTAATTACACAATTGTCTTAATTTTTCTAATTTTTTTTTACTTAAATAGCCTAATAGACTATTATTTTACACAAAAATCGGACACACCTTACCTTTTTAGCCCTCCTTACCACTAAATTTTTTTCAAAAAAATATATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATATTATTATTATTATTATTATGTAAGGAAAGTTTCTTGCTGTTTGAGGTTTAGGATTTAGATACACAATTTATAGGATATTTATGAAATATTAACTATATAGTAGATTAATACCCTAAATCTTTCTAATTTTAATGGTATCTTGGTAACAACCATCTTAATCTTCTATATAATTTTTTAATTTTCGCACCAACCGTCACATTAATTCTCATCCTTTTATTATACCAAAGTGAATTTAGGCCAAGTTTACCAACCTAATGAAAATTGGTGTAATCATAATAAAATTTCATGGATGAATCAATTGTAATAAGTCTAAATCTCAAATGTAACTGGAATGTTTTTAGTCACGTTTACTTAGAATTATGAACTTTGTCACATTTACTCTTACTGTTATCGTTACCTTTACTTCTTAAGGTCAAACGATAACAATAAAGGTGTTAAATTTTCAAACACAGTTGGAGTGAGCATCCTCTGCTTATCAAGCAATTTGCATTATATGATTAAAGATCTTGAAGTGGGCTCCATGTGCTAGTATTAACATAGAACACAAGTAAACAACACCAGAAATAATCAATTAAAACCTACTTTTTACATTACCATTAATCTATTACGTTTTCATTAAAGTAAATTTGGCCTTTTAGTTTAAAGATAATTAACATGAACTTATTCCCTTGGAGGTGTGGTTCACCATGGTGATTTAATCAAAAGGTATTTTTAAATAATTTCAAAATTACAAAAATACTTTTTTGCAACAAATTTCAAACTTGAAAGTTAAAAAATGAAACTTTTCGAAACCTAAAATCATAATTATTAAAACAAATCTCAAAAGCTCAAAAATACTTAATCACAAAAAAGACAGAAATATTTTATATAATTTAACGTTAAAATTAAGATTTATTAAAACAGAATAAATTCTAAGATAAAGACCAAAATAAAATTTCAACGAAAACAATCATTATAACAATAGCAAAGATAAGCATTGGACTCCAAAATCTTATTATCAATCAATACACAAAATTTCATCGATTCCCAAAGAAGTGAAGCCCTCCTTCTCCCACAAACCAAAGCTCGTCTTCTTCAATCTTCATCACTGCACTCAAATTTCCACCATGTGAGCACAAGCACAGAACTTCTTCTTTTACCTTACCTTTCGGCTCCAACTTGTTCTCTCTCTCTCTCTACTCTCAAATCAAACAGCGATCGAATTATTTCCCGCCTTTACATCACCCCCCCTTTTTTTTCTCTGTTCTCGATTCCCTTCGTCATCTTCTTCCCACTGCATTTTTCTATTCACTTTCTTACTTCAATTTGCTTGGTGGGTTTCAATCTCTGTGTTGAAATTCACCCGATTTCCCATTAAATAAATGGGGGAAAAGGAAAAGAAAAGAAAAAACCTAACAATCAGTGAGCTCAGGGGGACGGTTTAGTTGTTTTTTTTTTTTTTTTTTTAAAATTTTTCGCCCATGATTCTTTTCGATTCTAAAAAGTGGGTTGCTCTCCTTTTTTTAAGATTCTTTAGCCATTTGTGAAAGGAGATTCTTGATTCCCTTGTAATGATTCCGATTTAAACGCCCCCTTTTTGAAAATCGCCCAAAAAGCTTCAATGTCTCTTGGCCTTTAGCCTCTGTATCCGTCTGCTTCTCCCTCCTTTCCCCTTTCTTTTGACTTCAAAATCAAAACCCCTTTTCGAAATGGACTTATAAATGAGCTCTTAAGCCACACCCTTCACAAAAATTAGCTCCTCATAGCCACACCAATGGAAACTCTATATCCATCTTCACACCTCTCGAGCTCTGCCTGGTTTGTGCTTGATAATTCAAGCACAGAGTGGACTAAGGAAGAGAACAAGAGGTTTGAGAGTGCCCTTGCTATATATGATAAAGAAACGCCTGATAGATGGTTCAAAGTAGCTGCTATGATCCCTGGAAAGACTGTGGGTGATGTGATTAAGCAATATAGGGAGCTTGAAGAAGATGTTTGTGAAATAGAAGCTGGGAGATTCCCAATCCCAGGTTACGATCTTGCCTCTTCTTTTTCATTTGAGTTTGTTGATGATCGAAATTTCGATGCGTATAGAAGGAAATCTTCTGTTGGTAGGGGCTCTGATCATGAAAGGAAGAAAGGGGTTCCATGGACAGAAGAAGAACACAAGTAAGTTTTCATTTGGGGATTTTTCCGATATCTTACTTTACTGTTTGGTTTGAGTTTTTCTTGATTGGTAGGTTTGGTTTTGTTACTTGTGATGGTGTTTTTTAAGTGGTTGTTTTGTTTTATTGTCTTGTCTGTTAATCTCTTGTGTTGTAATATGACACGGGTGTTCTTGCTATGAAATTTGTTTATCTATATAGGCAATTTCTAAGGGGTCTTTTGAAGTATGGAAAAGGGGATTGGAGAAACATATCAAGAAACTTTGTGAACTCCAAGACTCCTACTCAAGTGGCAAGCCATGCTCAAAAGTACTTCATGAGGCAGCTTTCAGGAGGGAAAGACAAGAGAAGGCCAAGCATCCATGACATCACTACTGTCAATCTCACAGAGGCCACAGCATCAGAGAATGAGAAGTTATCCTCACTGGATCAGCTTTCCAAGCTTCCTTCACTGCAGAAGTCACCCTGCTATCAAAAGCTTTTGTTCGATTGGAACCGATCCAGCAACGGGGAGCTGCTCGGTTTAGGACCTAACTATGGCGATCGTCTTGTGTCATTCCCATCTGGGATTGCTGCAAATGGAATAAAGAATGAGCAAGATCAAGAACTGAACAGTGCATATTATGGAACTTACTCCAAACATCACAAATCCATATTTCAATTTGAACCCTCAAGACATCAAATTTACGGATGAGGCGGATGGATGTTCGTGTTCATTGCTCGGTTTTTAAAATCGCCAAGTCCAATAAGGTTCAATATAGACTCTTAAATGTCCATACCTTTTCTTTTGTGATGTTGTGCTTATGAAGATCAAAAGATTCATATATCTATCCTTTATCATCAAAGACATATGTGTGCCATATGAAATGAAATGAAA ATGACGACGATAGCATCCATTCGATCGGAGAAGCCAGACCTAGTGTCGTGCGATCTTGCTAGAAGCTCTCGATCTATGGTGTCGCAGATATTGACGGCGACGACGCTCGGGTTTGAGGAGGCAGACCGATTCGATGGTCCAGCTATAGTCGATCTGGCAAAAAACTCCCGATTCACGGTGTCTTGGATAGCAGCGGTGGTGGGGTTTAAGCTCCTCATAGCCACACCAATGGAAACTCTATATCCATCTTCACACCTCTCGAGCTCTGCCTGGTTTGTGCTTGATAATTCAAGCACAGAGTGGACTAAGGAAGAGAACAAGAGGTTTGAGAGTGCCCTTGCTATATATGATAAAGAAACGCCTGATAGATGGTTCAAAGTAGCTGCTATGATCCCTGGAAAGACTGTGGGTGATGTGATTAAGCAATATAGGGAGCTTGAAGAAGATGTTTGTGAAATAGAAGCTGGGAGATTCCCAATCCCAGGTTACGATCTTGCCTCTTCTTTTTCATTTGAGTTTGTTGATGATCGAAATTTCGATGCGTATAGAAGGAAATCTTCTGTTGGTAGGGGCTCTGATCATGAAAGGAAGAAAGGGGTTCCATGGACAGAAGAAGAACACAAGCAATTTCTAAGGGGTCTTTTGAAGTATGGAAAAGGGGATTGGAGAAACATATCAAGAAACTTTGTGAACTCCAAGACTCCTACTCAAGTGGCAAGCCATGCTCAAAAGTACTTCATGAGGCAGCTTTCAGGAGGGAAAGACAAGAGAAGGCCAAGCATCCATGACATCACTACTGTCAATCTCACAGAGGCCACAGCATCAGAGAATGAGAAGTTATCCTCACTGGATCAGCTTTCCAAGCTTCCTTCACTGCAGAAGTCACCCTGCTATCAAAAGCTTTTGTTCGATTGGAACCGATCCAGCAACGGGGAGCTGCTCGGTTTAGGACCTAACTATGGCGATCGTCTTGTGTCATTCCCATCTGGGATTGCTGCAAATGGAATAAAGAATGAGCAAGATCAAGAACTGAACAGTGCATATTATGGAACTTACTCCAAACATCACAAATCCATATTTCAATTTGAACCCTCAAGACATCAAATTTACGGATGAGGCGGATGGATGTTCGTGTTCATTGCTCGGTTTTTAAAATCGCCAAGTCCAATAAGGTTCAATATAGACTCTTAAATGTCCATACCTTTTCTTTTGTGATGTTGTGCTTATGAAGATCAAAAGATTCATATATCTATCCTTTATCATCAAAGACATATGTGTGCCATATGAAATGAAATGAAA ATGACGACGATAGCATCCATTCGATCGGAGAAGCCAGACCTAGTGTCGTGCGATCTTGCTAGAAGCTCTCGATCTATGGTGTCGCAGATATTGACGGCGACGACGCTCGGGTTTGAGGAGGCAGACCGATTCGATGGTCCAGCTATAGTCGATCTGGCAAAAAACTCCCGATTCACGGTGTCTTGGATAGCAGCGGTGGTGGGGTTTAAGCTCCTCATAGCCACACCAATGGAAACTCTATATCCATCTTCACACCTCTCGAGCTCTGCCTGGTTTGTGCTTGATAATTCAAGCACAGAGTGGACTAAGGAAGAGAACAAGAGGTTTGAGAGTGCCCTTGCTATATATGATAAAGAAACGCCTGATAGATGGTTCAAAGTAGCTGCTATGATCCCTGGAAAGACTGTGGGTGATGTGATTAAGCAATATAGGGAGCTTGAAGAAGATGTTTGTGAAATAGAAGCTGGGAGATTCCCAATCCCAGGTTACGATCTTGCCTCTTCTTTTTCATTTGAGTTTGTTGATGATCGAAATTTCGATGCGTATAGAAGGAAATCTTCTGTTGGTAGGGGCTCTGATCATGAAAGGAAGAAAGGGGTTCCATGGACAGAAGAAGAACACAAGCAATTTCTAAGGGGTCTTTTGAAGTATGGAAAAGGGGATTGGAGAAACATATCAAGAAACTTTGTGAACTCCAAGACTCCTACTCAAGTGGCAAGCCATGCTCAAAAGTACTTCATGAGGCAGCTTTCAGGAGGGAAAGACAAGAGAAGGCCAAGCATCCATGACATCACTACTGTCAATCTCACAGAGGCCACAGCATCAGAGAATGAGAAGTTATCCTCACTGGATCAGCTTTCCAAGCTTCCTTCACTGCAGAAGTCACCCTGCTATCAAAAGCTTTTGTTCGATTGGAACCGATCCAGCAACGGGGAGCTGCTCGGTTTAGGACCTAACTATGGCGATCGTCTTGTGTCATTCCCATCTGGGATTGCTGCAAATGGAATAAAGAATGAGCAAGATCAAGAACTGAACAGTGCATATTATGGAACTTACTCCAAACATCACAAATCCATATTTCAATTTGAACCCTCAAGACATCAAATTTACGGATGA MTTIASIRSEKPDLVSCDLARSSRSMVSQILTATTLGFEEADRFDGPAIVDLAKNSRFTVSWIAAVVGFKLLIATPMETLYPSSHLSSSAWFVLDNSSTEWTKEENKRFESALAIYDKETPDRWFKVAAMIPGKTVGDVIKQYRELEEDVCEIEAGRFPIPGYDLASSFSFEFVDDRNFDAYRRKSSVGRGSDHERKKGVPWTEEEHKQFLRGLLKYGKGDWRNISRNFVNSKTPTQVASHAQKYFMRQLSGGKDKRRPSIHDITTVNLTEATASENEKLSSLDQLSKLPSLQKSPCYQKLLFDWNRSSNGELLGLGPNYGDRLVSFPSGIAANGIKNEQDQELNSAYYGTYSKHHKSIFQFEPSRHQIYG Homology
BLAST of ClCG07G003970.2 vs. NCBI nr
Match: NP_001267652.1 (transcription factor DIVARICATA-like [Cucumis sativus] >KGN50634.1 hypothetical protein Csa_021391 [Cucumis sativus] >CAI30890.1 somatic embryogenesis MYB 1 transcription factor [Cucumis sativus]) HSP 1 Score: 574.3 bits (1479), Expect = 7.5e-160 Identity = 278/295 (94.24%), Postives = 286/295 (96.95%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. NCBI nr
Match: XP_008463216.1 (PREDICTED: transcription factor DIVARICATA [Cucumis melo] >KAA0037348.1 transcription factor DIVARICATA [Cucumis melo var. makuwa] >TYJ97559.1 transcription factor DIVARICATA [Cucumis melo var. makuwa]) HSP 1 Score: 573.9 bits (1478), Expect = 9.8e-160 Identity = 279/295 (94.58%), Postives = 284/295 (96.27%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. NCBI nr
Match: XP_038892962.1 (transcription factor DIVARICATA-like isoform X2 [Benincasa hispida]) HSP 1 Score: 569.7 bits (1467), Expect = 1.8e-158 Identity = 276/295 (93.56%), Postives = 285/295 (96.61%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. NCBI nr
Match: XP_038892961.1 (transcription factor DIVARICATA-like isoform X1 [Benincasa hispida]) HSP 1 Score: 561.2 bits (1445), Expect = 6.6e-156 Identity = 276/306 (90.20%), Postives = 285/306 (93.14%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. NCBI nr
Match: XP_022156884.1 (transcription factor DIVARICATA-like [Momordica charantia]) HSP 1 Score: 518.5 bits (1334), Expect = 4.9e-143 Identity = 259/296 (87.50%), Postives = 267/296 (90.20%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 5.2e-79 Identity = 156/303 (51.49%), Postives = 201/303 (66.34%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 2.3e-39 Identity = 86/183 (46.99%), Postives = 114/183 (62.30%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.9e-36 Identity = 92/209 (44.02%), Postives = 124/209 (59.33%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.9e-36 Identity = 92/209 (44.02%), Postives = 124/209 (59.33%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy Swiss-Prot
Match: Q2V9B0 (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.6e-24 Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy TrEMBL
Match: Q5NDD2 (Somatic embryogenesis MYB 1 transcription factor OS=Cucumis sativus OX=3659 GN=SEM1 PE=2 SV=1) HSP 1 Score: 574.3 bits (1479), Expect = 3.6e-160 Identity = 278/295 (94.24%), Postives = 286/295 (96.95%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy TrEMBL
Match: A0A5A7T3H8 (Transcription factor DIVARICATA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00820 PE=4 SV=1) HSP 1 Score: 573.9 bits (1478), Expect = 4.7e-160 Identity = 279/295 (94.58%), Postives = 284/295 (96.27%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy TrEMBL
Match: A0A1S3CJ35 (transcription factor DIVARICATA OS=Cucumis melo OX=3656 GN=LOC103501421 PE=4 SV=1) HSP 1 Score: 573.9 bits (1478), Expect = 4.7e-160 Identity = 279/295 (94.58%), Postives = 284/295 (96.27%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy TrEMBL
Match: A0A6J1DUX3 (transcription factor DIVARICATA-like OS=Momordica charantia OX=3673 GN=LOC111023720 PE=4 SV=1) HSP 1 Score: 518.5 bits (1334), Expect = 2.4e-143 Identity = 259/296 (87.50%), Postives = 267/296 (90.20%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. ExPASy TrEMBL
Match: A0A6J1GWM2 (transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC111458248 PE=4 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 2.6e-142 Identity = 255/296 (86.15%), Postives = 273/296 (92.23%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. TAIR 10
Match: AT5G05790.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 267.7 bits (683), Expect = 1.4e-71 Identity = 151/266 (56.77%), Postives = 181/266 (68.05%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 266.2 bits (679), Expect = 4.1e-71 Identity = 149/260 (57.31%), Postives = 176/260 (67.69%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. TAIR 10
Match: AT3G11280.2 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 266.2 bits (679), Expect = 4.1e-71 Identity = 149/260 (57.31%), Postives = 176/260 (67.69%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 265.4 bits (677), Expect = 6.9e-71 Identity = 131/218 (60.09%), Postives = 166/218 (76.15%), Query Frame = 0
BLAST of ClCG07G003970.2 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 250.4 bits (638), Expect = 2.3e-66 Identity = 136/253 (53.75%), Postives = 162/253 (64.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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