ClCG07G003320.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G003320.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr07: 3471631 .. 3471962 (-)
Sequence length243
RNA-Seq ExpressionClCG07G003320.1
SyntenyClCG07G003320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAGTGAGTCGATTCTTTCAGCGTTTTTTTACATTGAATTCTCGTCAAAATTTTGTTGTTTTTCTTATGAATTGAAATTGTTCTTGATGAAGAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

mRNA sequence

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Coding sequence (CDS)

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Protein sequence

MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFIIQAAESREVKLGRRFMFDDTRKEEVRGRSQKNPSGPNPIGNRHPPSIHG
Homology
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BLAST of ClCG07G003320.1 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-16
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1  MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFI--IQAAESREVKLGRRFMFDDTRK--EEV 60
          M EQN R LVL +L  GL +S QCVH  GF+   ++AESR+ + GR+FMF DT K  E+V
Sbjct: 5  MTEQN-RTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGREQV 64

Query: 61 RGRSQKNPSGPNPIGNRHPPSIHG 81
          R   +KNPSGPNPIGNRHPPSI G
Sbjct: 65 RASGRKNPSGPNPIGNRHPPSIQG 87

The following BLAST results are available for this feature:
BLAST of ClCG07G003320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600053.18.3e-1660.71hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of ClCG07G003320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G003320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G003320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..80
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG07G003320ClCG07G003320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG07G003320.1-exonClCG07G003320.1-exon-CG_Chr07:3471631..3471720exon
ClCG07G003320.1-exonClCG07G003320.1-exon-CG_Chr07:3471810..3471962exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG07G003320.1-cdsClCG07G003320.1-cds-CG_Chr07:3471631..3471720CDS
ClCG07G003320.1-cdsClCG07G003320.1-cds-CG_Chr07:3471810..3471962CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG07G003320.1ClCG07G003320.1-proteinpolypeptide