ClCG07G003320 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G003320
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr07: 3471631 .. 3471962 (-)
RNA-Seq Expression	ClCG07G003320
Synteny	ClCG07G003320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAGTGAGTCGATTCTTTCAGCGTTTTTTTACATTGAATTCTCGTCAAAATTTTGTTGTTTTTCTTATGAATTGAAATTGTTCTTGATGAAGAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

mRNA sequence

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Coding sequence (CDS)

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Protein sequence

MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFIIQAAESREVKLGRRFMFDDTRKEEVRGRSQKNPSGPNPIGNRHPPSIHG

Homology

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BLAST of ClCG07G003320 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-16
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFI--IQAAESREVKLGRRFMFDDTRK--EEV 60
          M EQN R LVL +L  GL +S QCVH  GF+   ++AESR+ + GR+FMF DT K  E+V
Sbjct: 5  MTEQN-RTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGREQV 64

Query: 61 RGRSQKNPSGPNPIGNRHPPSIHG 81
          R   +KNPSGPNPIGNRHPPSI G
Sbjct: 65 RASGRKNPSGPNPIGNRHPPSIQG 87

The following BLAST results are available for this feature:

BLAST of ClCG07G003320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600053.1	8.3e-16	60.71	hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG07G003320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G003320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G003320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..80
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G003320.1	ClCG07G003320.1	mRNA