ClCG05G019970.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G019970.2
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr05: 32198758 .. 32203710 (-)
Sequence length315
RNA-Seq ExpressionClCG05G019970.2
SyntenyClCG05G019970.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTGTAGTTACATAAAACCCTTTCCATCAACTTTATCCACTCTCAGGTTGGGGTTATTTACGCTGAAATTTTAAGTTTAGTTGGTAGACTTCACGTTTTGTTCCTAGAGTTTGTAATAGAGTTATTCCATTGTTTGGCTTCTCATGCTTTGGATTCAAGCTCATCTTGTTATTGGTCCAATGATCTTTCGGATTGGCTTGGTCGTTTGAGAAGTGTTCGATTGGGCTTGCAAATTATATCTAATGAAGCATTAATTTTGGTTCTAATCACTACTTATTACAAAAAAATAAGAATAATAATAATAAAATAAAAATAAAAAAGAATATTTATCTAAGATGGTTAATTTTATGACAAACATTATAGTTAATATGGTATTAATATACTCCCATTTCGGAAACTTTCGAACCGTTTGCTTTTCCTTCAATATTCTTCTTATTATATTCACTAATACCATCTTCACCCTTCCATAAAATAATACTATTATTATTATTAAGATAAAATAAAACAACAATTTATTTCTCAATAATTCCAATGACCAATATACGACATTTTTGGACTAAGAACAATGACAAAGAGAATAGTTTGTAGTCAACATAATTCTCTCTCATTCTATATACTGACCGTGTCCTAATATGAGTAAACTAGTTATGAACAAGGACACTGTTAAAATTTTTAATTTAAAAGTCTAAGATAATATTTAATCTAAAGAAAAATTTATTGCAAATATATATTATAACATAAAAAAATGTTTTATTTTCTAAAACTACAATGTAATTATAAGTAAAACAAAAACACACTAAGTTAAATTGTTTATGCTATAACTATAAACATCATATTTCAAATGTATTTAAAATTAGTGTCGAATGTAAATAAGATTTGATATCACAAGAGAAATAAAATATTAAATATAAAAATCACTTAATTTTATTCATCCCTTTAGGCTTTTTTTTTTCTCCTTTACTTTTCTCTCTTTTTTTTTAGTTTTTTTTTTTTTTGGTCAAAAGAAGAATGATTCTTTAATTCTGTATTTTTTTACCTCTCTTAAATTTTTTCTTCCTCTTTCTAACTTTGTTTCTCTTCCTAAAATGTTCTCTTTCAAACTTTTGTTCATCCTTAGTAATGGAAATTTTAATAACTTCTTTGTCTCCAAAATATTTGGTTTTTTCTTTATAATCTTTTATGTTGAAATTTTCTAAACTCGATTTTTATAAATTTAACTTACCATTTATAGAAGAATTCATTTGTTCTACTAACTTTTTTTAAGCAAAATTTTGAGTAATGTAAACAAACGTATTTATTATCATTAGTATTGTACACATGTATCTCACTCCATAACTAAAAGAATGCAACAATTCAATATGTAACTAACTCCATTGAGTTTGTGATAGTCGCAACCCATCTCGAAGAGTGCATCATTTGCACCTATTAGACTCAATAGACACTACATTCAAGGAGTCGTATCCTATCTAGAAAGGGTACATTAGGAATTTAAACCGTAGGAGCAAAATGAGGAGACAAAGATTCTCCCCTTATACCATCTTTTATATATAGTATAGATGAACGAAATTATTGTCTATTAAGGTGTGTGTGCATGTGCGTGGGAGATTTATAGTGTAAACGCACGGAGTATGATACTATATATAGGAGTACTAGAAATTTTCTCGCGAAATGGGAAAATTTCCTAAACTACGGTAGTATGGAAATTTCTCCATACTACCTCTATTTATTGTGTGTCATGTCAATGTACTTTCATAAATATGGTGGGACCTACTGAAATCATTGTGGGGTCCATAAATATTAGAGAAGGAAAATTTATAACGTAAACACAAGAGTATGACACTACATGAGTACTATAGATTTTTCCTAGCAGAATATATATTATTAACTTTTCCTTTTGAAATATTTAAAACTTGGCCATGTGGAAAATGTTATATGAGAAACTACCATATAAAACCAAAAAAAAAAAAAAAAGAAAAAAAAAAAGATTTACCTACTTTAATACCCAATTTTTAAAGATAATTATCTCTCATGATCGAAGAAATTACATTTTTTTTATGAAAATAACATCTCATCCAAAACATCTAACAAACTTAGACCGAAAAAGTTTGATCGAAAAAGTTCAAAATCTAATTTTGGAGAAGAGACATATTTATAAACTAACTTGTGGTCATTCAAATAATAATGTCTCCTCCTAAGGTGATTAACATTTGAAAAGGTAAATGCATTATAAAAAAAAAAAAAATGTAGCAATTCATGGAAAATGAAGCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGTAATTAAGGCCCTTCTATAAGATATATTAATATAACTTAAGTGTGTAAAATTGAATGCAAATAAAAATACACACTTATTGATATATACTGATTTTTCTTCTTTTCTTGTGGTAATAATTTTTTTTTTGTTCAGAAGTATTAAATTATAATGACGATAAAAAAACCGTACAACCTGAAATCAAGACAATTAAAACACAACCAATAGAAAGGAACAAAAATATAATGACAAAGAAACTATCGATTACATAGAAAAGCTTACACCATGCAAAGAAACAGATCACAAGGAGAAGAACCAACATGAATCCTCTGAATATATGCTACAAACCACTTAAAACAATATAGAAAAACATCAAGTGTCATAATCTAACTTGTCATGTGAAAATATATATATATAGAGGATATATAGTTATTCATTGTAATTTCCTTACTTTTAATTAATGTTTTGACGTGCGTGGTTTGTGTGTGTATAAACAAATGAACTTCATTAATGAAGATGTAAGAAAAGCATCACTCTCAACAAGGGGTAAAGCCCAAGATGGAAAAGAGCTAAACCAAATACGAGGAAAAGGACATTCTAACGAAAAATAATGGGCCGTTGGAGAATGGGCCCAAGGCAATACCAGGCCTTTTAACTTGATGAAAACATTTATTAATTTTTATTTTTATTTATTAACTAATATAGTAATATATTAAGTGATACTAGTTGTAATTTATGATTAATTTACCATATTCTCTTACATTTAATCAATTAATTAATTAACGAAGAAAAGTTATAAAAAACATAATATTTGCAAAATACAAATATTTTTAATATTCATAATTTAAATTTTATAATTTAATATTCATACACTCAACAAATAAAATCACAAATTTTTCTTTCCATAAGATTTCCCCATCTTATTGATTCCAAAGAAGAGAGGACATAAATATCTAAGTGTACCATTATTTTACTATTGAATAAAGATTATTAAAAAGAAATCAGTTACTTACAAGGTCCATTTTATAACTATTTATTTATTTTATTTTTTATTTTCAAAAATGGAGCTGAAGGTCTAACAATTTATTTACTATGAGATCTTAAAACAAGATTTGAATTTTTTTTTGTTTTTTTTTTGTCAAATTATAAAAATAAAAATAAAAATAAAAATAAAATTGTAAAAACTATAAAGAAACTTTTATGAGTGTTTATATAAGTTTAATCCTAAAACATTAGGGGGAAAAAGAAAATTTTGAAAGAAAGAGCAACAAAGAGAAGAAAATCAATTCAAACTAGCCTTTAATTATATTTAGAAACAGTGTTTTTAAAATGTTTTAAAATTGAAACTCATTTTTTAATGATTTTTCTAATTTTATGGGGACCATATGTGGCTTCAATTCTTCCTCATGGAATTATCTAATGATGTGTGTACAAGTTTTTTTTTTCTTTATAATTGACAGTTGAATAGTTGTCGTCTTCACAATTTTTATAGGATACACAAGTTATTTATCCTATGGTTAATTGATTTTGGGATAGAGCATAGGAACTTTTTTTGTAACCTTAAAAAATAAAAAGAAAATTAGAATAAAATCATTTTTAAATATAGTTGTATATTATCCTAAGGAAACAATTTATTGATCATAAGAAAAAGTACAAAGAAAAAAAAAAAAGTCTTCCGATTGAAAAAAATGGTAGAACGAAAGTATCATAATTATAAAAAAAGTATGATGATATCTTTCTAAATAATGACTTGATTCTTGGCATTGTTGTTGAACAAAATCAAATAAACCAGAATATAACACCGACAATGTTGCTCCAAAAAATTGTTAGGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAAGTATGAAGTATTTTGAGTGTTTCAGAAGTAAAGATGTGAAAGTTTATGTCTAAAGTGGATAATATTATACCATTATGAAGATAAGTGAAAGTTGCCGTGTCCTTATCAAGAATATGACTAACTAATTTTTTTTCTTCAAATAGTACGGACAATATAAAGTTGTATGTTATCCAAATTTCACACTTCCATTTTGATATTTCTATCTGTCTAATTCTATCTATCTTTCTAACATATTTGAATCTTCCCTTCCTCAAACTTGTCTAAATTTTTTATCTCTAACATATTTAACATACATTTCTTAAAAAAAAAAAATATTTAACATACGTTTACATTTAGAAAATAAAGTCATTGAATTATGGGTTTTACTTTTCATTTTCTGAAAAGTAGAAAAATCAAATGGTTCGCTATTCATTTAGTAAAAGATTTCAATTATTAAATTTTTGTTGGGTAATTAACTATTTTGCTTTGATTTTTTGTTTTCTAAAATTAAAGTTATAAAATACTACTTCTACAAATTTATATATAGTTTTAAATACTTAATTTTATATTTGAAATTTAACATAGAATTCATATTTATATTTTTAGCGTAGTTGAGAAGTGA

mRNA sequence

ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAATACGGACAATATAAAGTTCGTAGTTGAGAAGTGA

Coding sequence (CDS)

ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAATACGGACAATATAAAGTTCGTAGTTGAGAAGTGA

Protein sequence

MVIRNDAGEVVEAQAVRIPRHLEVEAAEALALLHGLRMVEEKMVENVWWSLMLKFNKQESHANLFPGEEWKQSLTLVREVREQWYISVDNHLQNTDNIKFVVEK
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 1..48
e-value: 1.6E-6
score: 28.0

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G019970ClCG05G019970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G019970.2-exonClCG05G019970.2-exon-CG_Chr05:32198758..32198773exon
ClCG05G019970.2-exonClCG05G019970.2-exon-CG_Chr05:32199198..32199215exon
ClCG05G019970.2-exonClCG05G019970.2-exon-CG_Chr05:32199359..32199435exon
ClCG05G019970.2-exonClCG05G019970.2-exon-CG_Chr05:32201244..32201283exon
ClCG05G019970.2-exonClCG05G019970.2-exon-CG_Chr05:32203547..32203710exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G019970.2-cdsClCG05G019970.2-cds-CG_Chr05:32198758..32198773CDS
ClCG05G019970.2-cdsClCG05G019970.2-cds-CG_Chr05:32199198..32199215CDS
ClCG05G019970.2-cdsClCG05G019970.2-cds-CG_Chr05:32199359..32199435CDS
ClCG05G019970.2-cdsClCG05G019970.2-cds-CG_Chr05:32201244..32201283CDS
ClCG05G019970.2-cdsClCG05G019970.2-cds-CG_Chr05:32203547..32203710CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G019970.2ClCG05G019970.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity