ClCG05G019970 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G019970
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr05: 32198758 .. 32203710 (-)
RNA-Seq ExpressionClCG05G019970
SyntenyClCG05G019970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTGTAGTTACATAAAACCCTTTCCATCAACTTTATCCACTCTCAGGTTGGGGTTATTTACGCTGAAATTTTAAGTTTAGTTGGTAGACTTCACGTTTTGTTCCTAGAGTTTGTAATAGAGTTATTCCATTGTTTGGCTTCTCATGCTTTGGATTCAAGCTCATCTTGTTATTGGTCCAATGATCTTTCGGATTGGCTTGGTCGTTTGAGAAGTGTTCGATTGGGCTTGCAAATTATATCTAATGAAGCATTAATTTTGGTTCTAATCACTACTTATTACAAAAAAATAAGAATAATAATAATAAAATAAAAATAAAAAAGAATATTTATCTAAGATGGTTAATTTTATGACAAACATTATAGTTAATATGGTATTAATATACTCCCATTTCGGAAACTTTCGAACCGTTTGCTTTTCCTTCAATATTCTTCTTATTATATTCACTAATACCATCTTCACCCTTCCATAAAATAATACTATTATTATTATTAAGATAAAATAAAACAACAATTTATTTCTCAATAATTCCAATGACCAATATACGACATTTTTGGACTAAGAACAATGACAAAGAGAATAGTTTGTAGTCAACATAATTCTCTCTCATTCTATATACTGACCGTGTCCTAATATGAGTAAACTAGTTATGAACAAGGACACTGTTAAAATTTTTAATTTAAAAGTCTAAGATAATATTTAATCTAAAGAAAAATTTATTGCAAATATATATTATAACATAAAAAAATGTTTTATTTTCTAAAACTACAATGTAATTATAAGTAAAACAAAAACACACTAAGTTAAATTGTTTATGCTATAACTATAAACATCATATTTCAAATGTATTTAAAATTAGTGTCGAATGTAAATAAGATTTGATATCACAAGAGAAATAAAATATTAAATATAAAAATCACTTAATTTTATTCATCCCTTTAGGCTTTTTTTTTTCTCCTTTACTTTTCTCTCTTTTTTTTTAGTTTTTTTTTTTTTTGGTCAAAAGAAGAATGATTCTTTAATTCTGTATTTTTTTACCTCTCTTAAATTTTTTCTTCCTCTTTCTAACTTTGTTTCTCTTCCTAAAATGTTCTCTTTCAAACTTTTGTTCATCCTTAGTAATGGAAATTTTAATAACTTCTTTGTCTCCAAAATATTTGGTTTTTTCTTTATAATCTTTTATGTTGAAATTTTCTAAACTCGATTTTTATAAATTTAACTTACCATTTATAGAAGAATTCATTTGTTCTACTAACTTTTTTTAAGCAAAATTTTGAGTAATGTAAACAAACGTATTTATTATCATTAGTATTGTACACATGTATCTCACTCCATAACTAAAAGAATGCAACAATTCAATATGTAACTAACTCCATTGAGTTTGTGATAGTCGCAACCCATCTCGAAGAGTGCATCATTTGCACCTATTAGACTCAATAGACACTACATTCAAGGAGTCGTATCCTATCTAGAAAGGGTACATTAGGAATTTAAACCGTAGGAGCAAAATGAGGAGACAAAGATTCTCCCCTTATACCATCTTTTATATATAGTATAGATGAACGAAATTATTGTCTATTAAGGTGTGTGTGCATGTGCGTGGGAGATTTATAGTGTAAACGCACGGAGTATGATACTATATATAGGAGTACTAGAAATTTTCTCGCGAAATGGGAAAATTTCCTAAACTACGGTAGTATGGAAATTTCTCCATACTACCTCTATTTATTGTGTGTCATGTCAATGTACTTTCATAAATATGGTGGGACCTACTGAAATCATTGTGGGGTCCATAAATATTAGAGAAGGAAAATTTATAACGTAAACACAAGAGTATGACACTACATGAGTACTATAGATTTTTCCTAGCAGAATATATATTATTAACTTTTCCTTTTGAAATATTTAAAACTTGGCCATGTGGAAAATGTTATATGAGAAACTACCATATAAAACCAAAAAAAAAAAAAAAAGAAAAAAAAAAAGATTTACCTACTTTAATACCCAATTTTTAAAGATAATTATCTCTCATGATCGAAGAAATTACATTTTTTTTATGAAAATAACATCTCATCCAAAACATCTAACAAACTTAGACCGAAAAAGTTTGATCGAAAAAGTTCAAAATCTAATTTTGGAGAAGAGACATATTTATAAACTAACTTGTGGTCATTCAAATAATAATGTCTCCTCCTAAGGTGATTAACATTTGAAAAGGTAAATGCATTATAAAAAAAAAAAAAATGTAGCAATTCATGGAAAATGAAGCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGTAATTAAGGCCCTTCTATAAGATATATTAATATAACTTAAGTGTGTAAAATTGAATGCAAATAAAAATACACACTTATTGATATATACTGATTTTTCTTCTTTTCTTGTGGTAATAATTTTTTTTTTGTTCAGAAGTATTAAATTATAATGACGATAAAAAAACCGTACAACCTGAAATCAAGACAATTAAAACACAACCAATAGAAAGGAACAAAAATATAATGACAAAGAAACTATCGATTACATAGAAAAGCTTACACCATGCAAAGAAACAGATCACAAGGAGAAGAACCAACATGAATCCTCTGAATATATGCTACAAACCACTTAAAACAATATAGAAAAACATCAAGTGTCATAATCTAACTTGTCATGTGAAAATATATATATATAGAGGATATATAGTTATTCATTGTAATTTCCTTACTTTTAATTAATGTTTTGACGTGCGTGGTTTGTGTGTGTATAAACAAATGAACTTCATTAATGAAGATGTAAGAAAAGCATCACTCTCAACAAGGGGTAAAGCCCAAGATGGAAAAGAGCTAAACCAAATACGAGGAAAAGGACATTCTAACGAAAAATAATGGGCCGTTGGAGAATGGGCCCAAGGCAATACCAGGCCTTTTAACTTGATGAAAACATTTATTAATTTTTATTTTTATTTATTAACTAATATAGTAATATATTAAGTGATACTAGTTGTAATTTATGATTAATTTACCATATTCTCTTACATTTAATCAATTAATTAATTAACGAAGAAAAGTTATAAAAAACATAATATTTGCAAAATACAAATATTTTTAATATTCATAATTTAAATTTTATAATTTAATATTCATACACTCAACAAATAAAATCACAAATTTTTCTTTCCATAAGATTTCCCCATCTTATTGATTCCAAAGAAGAGAGGACATAAATATCTAAGTGTACCATTATTTTACTATTGAATAAAGATTATTAAAAAGAAATCAGTTACTTACAAGGTCCATTTTATAACTATTTATTTATTTTATTTTTTATTTTCAAAAATGGAGCTGAAGGTCTAACAATTTATTTACTATGAGATCTTAAAACAAGATTTGAATTTTTTTTTGTTTTTTTTTTGTCAAATTATAAAAATAAAAATAAAAATAAAAATAAAATTGTAAAAACTATAAAGAAACTTTTATGAGTGTTTATATAAGTTTAATCCTAAAACATTAGGGGGAAAAAGAAAATTTTGAAAGAAAGAGCAACAAAGAGAAGAAAATCAATTCAAACTAGCCTTTAATTATATTTAGAAACAGTGTTTTTAAAATGTTTTAAAATTGAAACTCATTTTTTAATGATTTTTCTAATTTTATGGGGACCATATGTGGCTTCAATTCTTCCTCATGGAATTATCTAATGATGTGTGTACAAGTTTTTTTTTTCTTTATAATTGACAGTTGAATAGTTGTCGTCTTCACAATTTTTATAGGATACACAAGTTATTTATCCTATGGTTAATTGATTTTGGGATAGAGCATAGGAACTTTTTTTGTAACCTTAAAAAATAAAAAGAAAATTAGAATAAAATCATTTTTAAATATAGTTGTATATTATCCTAAGGAAACAATTTATTGATCATAAGAAAAAGTACAAAGAAAAAAAAAAAAGTCTTCCGATTGAAAAAAATGGTAGAACGAAAGTATCATAATTATAAAAAAAGTATGATGATATCTTTCTAAATAATGACTTGATTCTTGGCATTGTTGTTGAACAAAATCAAATAAACCAGAATATAACACCGACAATGTTGCTCCAAAAAATTGTTAGGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAAGTATGAAGTATTTTGAGTGTTTCAGAAGTAAAGATGTGAAAGTTTATGTCTAAAGTGGATAATATTATACCATTATGAAGATAAGTGAAAGTTGCCGTGTCCTTATCAAGAATATGACTAACTAATTTTTTTTCTTCAAATAGTACGGACAATATAAAGTTGTATGTTATCCAAATTTCACACTTCCATTTTGATATTTCTATCTGTCTAATTCTATCTATCTTTCTAACATATTTGAATCTTCCCTTCCTCAAACTTGTCTAAATTTTTTATCTCTAACATATTTAACATACATTTCTTAAAAAAAAAAAATATTTAACATACGTTTACATTTAGAAAATAAAGTCATTGAATTATGGGTTTTACTTTTCATTTTCTGAAAAGTAGAAAAATCAAATGGTTCGCTATTCATTTAGTAAAAGATTTCAATTATTAAATTTTTGTTGGGTAATTAACTATTTTGCTTTGATTTTTTGTTTTCTAAAATTAAAGTTATAAAATACTACTTCTACAAATTTATATATAGTTTTAAATACTTAATTTTATATTTGAAATTTAACATAGAATTCATATTTATATTTTTAGCGTAGTTGAGAAGTGA

mRNA sequence

ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAATACGGACAATATAAAGTTCGTAGTTGAGAAGTGA

Coding sequence (CDS)

ATGGTGATCAGAAACGATGCTGGCGAAGTTGTTGAAGCTCAGGCCGTGAGAATCCCTAGGCATTTGGAAGTTGAAGCGGCTGAAGCTCTTGCCCTTCTGCACGGGTTGCGGATGGTCGAAGAGAAGATGGTGGAAAATGTTTGGTGGAGTCTGATGCTGAAGTTCAACAAACAAGAGTCACATGCCAATTTATTTCCAGGGGAAGAGTGGAAGCAAAGTCTTACATTGGTTAGAGAAGTAAGAGAACAATGGTATATTAGTGTAGACAATCATCTCCAAAATACGGACAATATAAAGTTCGTAGTTGAGAAGTGA

Protein sequence

MVIRNDAGEVVEAQAVRIPRHLEVEAAEALALLHGLRMVEEKMVENVWWSLMLKFNKQESHANLFPGEEWKQSLTLVREVREQWYISVDNHLQNTDNIKFVVEK
Homology
The following BLAST results are available for this feature:
BLAST of ClCG05G019970 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG05G019970 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG05G019970 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG05G019970 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 1..48
e-value: 1.6E-6
score: 28.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G019970.2ClCG05G019970.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity