ClCG04G001600.1 (mRNA) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGGTTGGTTGACCTTTACAAATATACTTTTTATTAAATTATACAACTAATTATGTTTATTTTTTAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAGTAAGTGCTTAATGTGTTCTTCATTAATAAACATGAATTTGAAATATAATACTTTTCTTTTTATGTAGAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAAGTGACTTAAATCTGTCATTGAAGATTGACATTTTTTGTGCAATAAGTTTGAGAGCCCTGAATTTAAAGTATGTCTTACTTTACATTTATTAGTTTTTTCCTCTTTATACAATTTGATGTCTCTTAAGCATATTTGTTGTATCTCTATTAGAAACTGGCAGAGACTAATAGGAAGAACCAGGTAGAACTAAAATTCAACCATCAAGCTGGGCCTAAGACATTCATCAACATACAACAGAAACTAATGAGACATCTTAAACATATTTGTTCTATCTCATTATCTATATTTAATCACTAATAAACTTTACTTTTTGTGGGGTTTGGATTTTAGAGTGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAATGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAATGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG MAGPFDDNQEAEDEFDAIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLKKPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKFIERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGGPQSEPIDLFKKTHSRDD Homology
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: XP_038902987.1 (uncharacterized protein LOC120089695 [Benincasa hispida]) HSP 1 Score: 129.4 bits (324), Expect = 3.2e-26 Identity = 73/163 (44.79%), Postives = 107/163 (65.64%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]) HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25 Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK17077.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK11476.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK12144.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CZD0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00260 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CZJ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00390 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24 Identity = 64/158 (40.51%), Postives = 100/158 (63.29%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CLU4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00810 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CM32 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001360 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3DD82 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00120 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23 Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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