ClCG04G001600.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G001600.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCACTA en-spm transposon protein
LocationCG_Chr04: 5687724 .. 5688742 (-)
Sequence length555
RNA-Seq ExpressionClCG04G001600.1
SyntenyClCG04G001600.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGGTTGGTTGACCTTTACAAATATACTTTTTATTAAATTATACAACTAATTATGTTTATTTTTTAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAGTAAGTGCTTAATGTGTTCTTCATTAATAAACATGAATTTGAAATATAATACTTTTCTTTTTATGTAGAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAAGTGACTTAAATCTGTCATTGAAGATTGACATTTTTTGTGCAATAAGTTTGAGAGCCCTGAATTTAAAGTATGTCTTACTTTACATTTATTAGTTTTTTCCTCTTTATACAATTTGATGTCTCTTAAGCATATTTGTTGTATCTCTATTAGAAACTGGCAGAGACTAATAGGAAGAACCAGGTAGAACTAAAATTCAACCATCAAGCTGGGCCTAAGACATTCATCAACATACAACAGAAACTAATGAGACATCTTAAACATATTTGTTCTATCTCATTATCTATATTTAATCACTAATAAACTTTACTTTTTGTGGGGTTTGGATTTTAGAGTGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG

mRNA sequence

ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAATGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG

Coding sequence (CDS)

ATGGCTGGTCCATTTGATGATAACCAAGAAGCAGAAGATGAATTTGATGCAATTGAGACTCTTAACATAAGATCTTCCACAGGGGATACTTCAGATGGAAGTTTAATGGTTGCTAGATCACGTGGGTACTCACGTAACATTGAGTTGGATCGATATGTCGAACGTCATGGGAGAATTCCTATCGACATCTCGTTTGATTTGAAGAAGCCAGTTGATCATTGGGCTACAAGATTCAGCAACGCTATTAGTACTGCTGTGAGGGAAGGCTTTCCAGTATGTTATACCACATGGACGAATGTGCCGTTAGATGTGATCGATGTTGTTAAAATTCGAATCCAAAACTACTTCGAGGTTGACATGTCCTTATCTCATGTGCAAAAGTTCATTGAACGTCAAATGCAAACATCATTTAAAGAGTATAGGCCGGATTTGCATAAACACTACAAGCGGTTTAACAATCCTAAAGAGGCACGTGCGGACCCATCTAATGTGAAAGGTGGTCCACAGAGTGAACCAATTGACCTGTTTAAGAAAACCCACTCGCGAGATGACTAG

Protein sequence

MAGPFDDNQEAEDEFDAIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLKKPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKFIERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGGPQSEPIDLFKKTHSRDD
Homology
BLAST of ClCG04G001600.1 vs. NCBI nr
Match: XP_038902987.1 (uncharacterized protein LOC120089695 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-26
Identity = 73/163 (44.79%), Postives = 107/163 (65.64%), Query Frame = 0

Query: 9   QEAEDEFDAIETLNIRSSTGDTSDGSLMVAR-SRGYSRNIELDRYVERHGRIPIDISFDL 68
           +EA++EF  +   N  SS GDTSD S    R  R +SRNI+L++YV++HG I I I+   
Sbjct: 8   READEEFQELYLNNKVSSVGDTSDSSSTSNRKKREHSRNIKLEKYVQKHGIIIIVINEGE 67

Query: 69  KKPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQK 128
            KP+   + RFSNAI  AVR  FPV   T+T VP + I++ KI++  +F++D+S   + +
Sbjct: 68  TKPISKHSVRFSNAIGVAVRFAFPVHCRTFTEVPNEFIELAKIQLLAHFKLDLSSQRLNR 127

Query: 129 FIERQMQTSFKEYRPDLHKHYKRFNNPKEARAD-PSNVKGGPQ 170
           FIE QMQ SFKE+R DL++HY++  NP++  A  PS +K  P+
Sbjct: 128 FIEHQMQNSFKEFRADLNRHYRKCGNPQQVCASLPSWLKNRPE 170

BLAST of ClCG04G001600.1 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 0

Query: 14  EFDAIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLKKPVDH 73
           E DA      RS +   S G     R+RG+SRN+ELDR+V  HGRI I+I  ++ KPV  
Sbjct: 546 ERDATMASGSRSCSRQVSRGE--KRRTRGHSRNLELDRHVNIHGRIRIEIDEEVGKPVCA 605

Query: 74  WATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKFIERQM 133
            AT+FSNAI T  R   P+    W++V  +V D+V  ++ +YF+ D+   HV+K++ +++
Sbjct: 606 NATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVVDQLLSYFDFDVGKKHVKKYVLQRV 665

Query: 134 QTSFKEYRPDLHKHYKRFNNPKEARADP 162
           Q +FKEYR DL+KHY+RF +PKEARA P
Sbjct: 666 QNTFKEYRSDLYKHYRRFKDPKEARACP 691

BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK17077.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 11  EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 70

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 130

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 131 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 169

BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK11476.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 163 EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 222

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 223 KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 282

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 283 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 321

BLAST of ClCG04G001600.1 vs. NCBI nr
Match: TYK12144.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 11  EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 70

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 130

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 131 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 169

BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CZD0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00260 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 11  EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 70

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 130

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 131 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 169

BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CZJ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00390 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 64/158 (40.51%), Postives = 100/158 (63.29%), Query Frame = 0

Query: 12  EDEFDAIE--TLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLKK 71
           E++ D I   + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +K
Sbjct: 11  EEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEK 70

Query: 72  PVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKFI 131
           P+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F+
Sbjct: 71  PISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFV 130

Query: 132 ERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 131 EHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 168

BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CLU4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00810 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 11  EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 70

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 71  KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 130

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 131 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 169

BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3CM32 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001360 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 12  EDEFD---AIETLNIRSSTGDTSDGSLMVARSRGYSRNIELDRYVERHGRIPIDISFDLK 71
           ED+ D   A  + ++  +TG +S  +    R R  SR +EL+R+V  +GRIP+ I+   +
Sbjct: 163 EDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 222

Query: 72  KPVDHWATRFSNAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKF 131
           KP+   A RFS AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F
Sbjct: 223 KPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRF 282

Query: 132 IERQMQTSFKEYRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +E QM T+FKE+R D HKH+K++++P+EARA+P N   G
Sbjct: 283 VEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVG 321

BLAST of ClCG04G001600.1 vs. ExPASy TrEMBL
Match: A0A5D3DD82 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00120 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 0

Query: 25  SSTGDTSDGS-----LMVARSRGYSRNIELDRYVERHGRIPIDISFDLKKPVDHWATRFS 84
           SS GD + GS         R R  SR +EL+R+V  +GRIP+ I+   +KP+   A RFS
Sbjct: 22  SSVGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFS 81

Query: 85  NAISTAVREGFPVCYTTWTNVPLDVIDVVKIRIQNYFEVDMSLSHVQKFIERQMQTSFKE 144
            AI   VR+ FPV    WT+V  + I+VVK  +Q +F +D +   + +F+E QM T+FKE
Sbjct: 82  QAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKE 141

Query: 145 YRPDLHKHYKRFNNPKEARADPSNVKGG 168
           +R D HKH+K++++P+EARA+P N   G
Sbjct: 142 FRADCHKHFKKYSDPEEARANPPNALVG 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902987.13.2e-2644.79uncharacterized protein LOC120089695 [Benincasa hispida][more]
XP_038887409.14.6e-2545.95poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
TYK17077.11.9e-2340.88CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK11476.11.9e-2340.88CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK12144.11.9e-2340.88CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CZD09.3e-2440.88CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CZJ19.3e-2440.51CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CLU49.3e-2440.88CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CM329.3e-2440.88CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DD823.5e-2343.24CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..184

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG04G001600ClCG04G001600gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG04G001600.1-exonClCG04G001600.1-exon-CG_Chr04:5687724..5687790exon
ClCG04G001600.1-exonClCG04G001600.1-exon-CG_Chr04:5688123..5688271exon
ClCG04G001600.1-exonClCG04G001600.1-exon-CG_Chr04:5688340..5688584exon
ClCG04G001600.1-exonClCG04G001600.1-exon-CG_Chr04:5688649..5688742exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG04G001600.1-cdsClCG04G001600.1-cds-CG_Chr04:5687724..5687790CDS
ClCG04G001600.1-cdsClCG04G001600.1-cds-CG_Chr04:5688123..5688271CDS
ClCG04G001600.1-cdsClCG04G001600.1-cds-CG_Chr04:5688340..5688584CDS
ClCG04G001600.1-cdsClCG04G001600.1-cds-CG_Chr04:5688649..5688742CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG04G001600.1ClCG04G001600.1-proteinpolypeptide