Chy9G157340.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy9G157340.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Regulator of nonsense transcripts UPF3 isoform X1
Location	chrH09: 204900 .. 219634 (-)
Sequence length	2532
RNA-Seq Expression	Chy9G157340.1
Synteny	Chy9G157340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAAAGATAGAGATAAAGAGAATAGAGAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGGTTCTTCCATTCCTACCTCCATTATTATTATTATTCTTTTCCTCTTCATCCATATTTTACTTCATTCCCCAACACCTATACCACACCATTAATATTATTCCAACTTCTACTTAATTAACCTTTTAATTATTTCCTCATCTTCTTCATCCTCTTTTTCTTTTTCTTTTTTCTTTTTTTTTTTTTTTGGTTTTTAGGGGCATACATGAAGAAATATTGTGTTTAATTAATCACCTCCATAAGTAATAATATAGATTTAGTCTTGGTTTATATACTTTTTAACTTTTGTGTCCATAAAAATAAGATTTTTAAACTTATTCCAAAATGATCATTATTGTAACTCAACTCTTATACAACTTCTTCTATCGGCCATCTCGAAGTTGGAAGTTTTATTTCTGAAAAAAATTGTTTTCAAAAGCCCTTTTAACCTCAACTTTCACATGAGTATCTACCAAGTATTTCCATGAATTTTTATGAAGTTTGATTAGACACAAGATTGAAATTTCAAGGAAATATTATACGGATGCAAAAATTTAATGGTTAACAGGGTAATTTATTAAACAAATTATAATGTTTAACAACTAAATATACACAAACCTAAACATTCAACAACTTATTAAGAAGTTACAAAATTTGATAGACTCACTAACAGACTTTCAACCCACCCACTGTGAAAAGAAGCAGTATGGATCTTGAGAGTTTTCACATGTGAGTAAGGGGTATCTCGGCTAGAATGTCAAAGTCAATGACAACACCAATACGTAAAGTTTTTGGACTAAACTTGTAATTATTCCTAATGGTTTATTCCTAGAGGGAAATATGAACAAAGGATGAGAAAGAAAAAGTAAGAAAAAATTGGCCATATATATGACTGCCAAAACCCTATTTTTCATTGTGTTGGATTTGGAATGGATATTCATCAAAAGTGTGGTTTCCTTGTATAGTTTAGATTTATGAGGCATGAGCTATGTTTAACAAAATTCTGCCCTAAATATGTCATCTTTTTTCAACAATGAAACAACTGTTCATTTTACATTAAAAAGGAAAGAAAACAAAACACTTCTTCCCTTTTCAAACTCAATGTTCCCTTCATTTCTAGGGTTTCAAACCTTACACCTCCGACCAACCCTTCAAAATAACATTATAAATAACAACTTCTTTTAATTTTTACAGAATTAGAAGTCCTTTCGTAAAAAAAATTTAGTTGAAATATTTGAGTGCACCTTCTCAATCACCTTATTTGTCTCTCGTTAAAAATAACTTCATTGGGTTTTAAAAATTAGGTTTTTTGTTCTATTTTTTCCAAATTTAAATTTGAGGAATTGTTTTAAATAAGAAAACTATTACAAATATTTACAAATATAACAAAATTTCATTGTCGATAGTCACATAGACACATATATTATCATAGTCTATTATATCATCTATCAATGTTGTTTTTCCTATGTTGTAAATATTTTGTTTTATTTTGCACAAACAACCCTTGAAAATAGAAATATTGATAAAGTATATATATTCTTAGAATAATCATGAAACCTATAAAAATATTCAAATTAATAATCCCTAAGGATTTCACACATTTCATATAATTAAGCTTAGGAAATTCTAATCATCATGTTTTGTAAATATATATTGTAAATGTCCTCCATATCCAATTCCTAGCTTAGTCTCTCTCCCCTCATTATGTTTTGATCTTTTTTTACTTAGATGCCTTTTTTTCTCTTATTATGTATCATCTGCTTCTCTGGACTTGTTTTTGTTGATTTCCAAGAATATTTCCTATTTCTTTGGCTTCTCTGTTCTTGTTTGTGTGAGTGTGTGTTTTAATATTCTTTAATAATGAATCAGATTATTGTCTGTCAAAGTTTTGCCCCATCAATCTTTTTAATAACTATGCTTAATTATTTTGTTTTCTAGAACAATGTTTCTTATCAGAAATGTATTATTGTTTAACTTGTTCAAAACTTTCCTTTTCTGTTTTATTATGAAAAATATCAATTCATACTAATAACTAATAAGATTTGAAATTGTACTAATTCAAACCTACGTTTAAACCTTTTTTTTTTTAAAAAAAAATAAACCTGTAAACTGTAAAAAGAGTATTAGTTTTATTTATGTGAAGCTTGAGAAAACCAAGAGTGTGAAGTCTGACAAAACAGCTTTGAAACAAGCTTTTCCAATGGCATTTAAATTTTTATAGGACTATTCAAAACACTTGTCTTTTGTATATCCATTTTTTCACACCCCTTTGCATTTTTCCCTCTTTGTGTAAATATCCATAAACATAATCTCTATACAGAATCTATAGCCCATACATACATACACCATCTCTCTTTCACTTTTCCATTTTAAGCTATAATAATTAGTTTAAGTTTGTTCCAATTCCCCATATCTCCCTTTTTCTCCCTTTGCTATATCTTTCTTTCTTCCATGGGGTGTTCTTTTCAAATTTATAGAAAAACCCTCCAAAACAAAACCTAATGGTACCATTACCTATTCTCATGTCAACAAAAATTTAAGCTCCTGACATTATACTACCAGTCTTCTCATATGCTTTGAATATCTAGATTTGAACACACTCACATACTGATTATACAAAGAGAGAAAGAATGTTTCATATGTAAACATATATAATATCTTAAGGTGCGATTAACCTTCCAACTTGTTTTGGGTGAGTGGCCAAAATGTTTAAGTCTCCTACTATCATAGCCATATATTATTAATAACTAAGGGCACAGTAACATTAAAATGAGATGATTTTGTTCTTAATTGACTTCTATTAGTGATTCTAAAAATGTGTGTTTCATTTTTATTATTTTATTTTGCAAATATGTGATAAGGGGAGAGAGAAGGGTTAAGATGGCCTTTTATAAACTTCTCAGAGAACACCACTGATCCAAACCATCTTGGTCTATATTTATTGATTGTTGGACTAAAAAAAACTGGCAATTAAATTTGGTATTAAAGAATATAAAGAAATCAGAATGAAGCATGTTAAATAATATGACTGTACAGTCTGTTTTCTGAAATTTCATCATTTTCATGTCAAAGCTCAGTTCATTGAAGGATCTGTGTCTGAACATACACATTTACATATATTAGGCAATAATTGGAAGTGATTTTGCATCTGCTTTGGCCATTAAAAAAGTCTTGCTCCTAAATATCTTCTGTTAGCTTTTCTAAAGTCTCTTTCATCGCACACACACACACACATTTATTTGCTTTCATCAATTGATGAAGACAAACCAATGGATTAAGACATTTTATTATTAACTAAATACTAAAGGTACAAATCTATATATGTCGTCCATTCAAAAAAAACCTTTAGGGGAAGGAAGAACGTATACTTATGAAAAAAAAGAATAAAAATCTTGCTAATACTTTTATTATTATTATTGTTTTTTGTATTCTTCTGATTAAATATGTTTTACACTTTAATTTTGATAGGAATGTGTTCAAAATATAGGAAAACAAATCAATATATTTACAAAATATAACAAAATTTTAGTATGTATTATTACTAATTGATAAATTTTAAATTTTTTTATTATACTTGTAATATATATTTTAAGCTGTTTTTTCCATTTCAAGAATGTAATGCAAAGGTAAGCCTTGCTTTTGAACAAAAAGTCAACTCATTTGTTATGATTAGAAGTGTAAGACTTTCCTAAATGATAGACTAAAATAAAATAATCAAAGTTAAGGTTACAGAACTTTGAGAATTTGGTAGCAAAAATTTAGTATTAAAAAGCTAAAAGGTTTTGCACATTATTTGAAGTTTTCCTCCCCCAAATTTATGGAGAAAAGCAAGCTCACATGTCAAATTCTTTTCAACTTTATGTTTTATAGCTATACACATAGCTAACATAATTATATCAATACCATTAGCTAGTCTAGTAGTAAAACGGCGTCTTCCAACCCAATTAAATTTAGTTTCAAGCCATACTGTTTACATTAGTACATGTAGAGCTATTATAGTGATATTTGGTTTCCAATGTCATTTCATTTTCCAATTATATATTAACTAATTGGCCGTTGAATTGGTAATTATCCTAAGATTAAATATGCTGTGTTGATTAGAAAAAAAAAAGAGTGAATGAATGCTTGGAAATCAAGAATGTTAACAATGGAAATTGGTTTGTATAATTATATGTGAATATTGCAGCATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAAGTCAGCTTCTCTCTCTTTCTCTCTCCCTCTCCTTAATTAATTATTTTTGAAATCTCGAGAGTAATTTTAGACATTCAAAACTGAGTGTTATAACACATACACGATGTTCAATAAATTCATAAGATTGTAATATATAACAAGTTAATTATTTGGTTTAATAGTCTTAAAAGTTTTCTCTAGCTATGATATAGATTTTTTTCTTCTCAAATTTCTTAATATTCATGAAGCCTAACATGTTATTATGATATGATATATGAAGTATTATCAGCAAGAATCGGCTAAACTGCGTCAACAGATACAAATGCTTCAGAATTCCAACAGGTTATTATTATGAGTGACTTTCTTTAATACGCCATTCCATTTATAAACATATATGATATATAATATTGGGCTAAATATATAATTTTATCTTGAATATTTGTGTTTCTCTTTTGTTTGTTTTTTTTCTTTCTCCAATTTCGTCCCTAATTTTTCTTTGTGTGTGTGTGTGTTAAGTATAGAGGTATTAAAGAAAAAGATTAGGGACGAAATCAGAAAGAAAAAAGAAAGAAAGAAAAGAGGGAAATAAAATATTGAAAAAGAAAAAGATTATATATTTAGCCAAAAAAGAAAGAAAAATGAAAGGTGGGGTTGAATAAGCTACTCTCATGTGTTGAAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGGTTTTTATATATACATTCTTACTCAAACTTTTTTTTTTTTTTTTCATTTACATGATGACGATCACTAATTAAAATTTGAATCTAATTAAATAAGTATATTGATTAGGGTATATCTTCTCTCTCCGTTGAAAGATTGAACAATATGCATTCTAGTTCTATGCATATATTTAGTATTTGGGCGATTGTGATATTTTGTGAGTGTTTTGTTTGTCAAAACATTTAAACGTTACATCTCATTTGAATTTTGTGATCATGATATTAGATTGTATATTTGTCTTGTTTTGTTTTACAATATAGGGGGTGGGAAAAAATACAACATTTAACTTTGGAGCTTGATAAAAACAAATACTATATTAGTTTAAGCTATGCTATATTTTCTTTTCTAGGAATGTCTCATGATGATTAATTGTTGTTGCACTGATACTTCCCATCTTCCCCTTTTATATAAAGTTAAAAGTAAGTAATATATATATTTTTTTTTCCTTCTTAATTTGTTGAACAGCACGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGTAAGTAATCTAGACTGAAACCAAACCACCATACACACATTTACCTTTCTAATTAAGTTCCTGAACTTTCGGTAAAAAAAGGAAAGAATTTCTTGTTTCAATTTATATAAAACTTTAGATATATATAATTGGGATGCTCTTCCTTGTATTAGGAGATTGAGCTGGAGAACGAAAATGTGTGTATTAGAACCAAGGTATGTATACATATCAAACATTATGCATGATTCCTTGTATATATATATATATAGATCAGAGAGATGGGAGATTGAAATGGACAATATATATTATAGCATTGATGCTAAATTTGGTGAATATAATTAATATAATGTGTTTCAAACATCAAACAGATAGCAGAAGTAGAGAGGGTTCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATACAAGCATTGGCTAACTCTCGCAATTTCTTCTCTCCCAATATTATGGAACCAACTGGACCTGTTTCTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTATTCTTTCTTTATTTTGATTTATTCTCATCAACACAATTTCAAAATATATGTTAACATTAAGAAAGATTCAATTGAAATATAAAATCAAAAAGTCAATACTGATCTTATGTTTGAATTGGCAATGAGTACTTTTTTTTCTCTTGTGATACCACAGGTGATGCTGTTTTGGAGACCAAAATGATGGGGACAATTGTTTGTTTTAATTAATATTCAGAAAATCATTGAGATTACTAAAAAGAATTAAAATAAAATATGCCCATCATTTTCTGAAGTACAAAATTTAATTAATTTTACTCAATGATCAGTGATGATCAGAGCGTGAGATGTGATTTAATTTGCAGTTTGTGTGTTTCAAATCCTATATAAATGTTATTATATACTACATACATATGATATGATATATATATAATATGCTACAATGACTCTAATGCTAATGATATGTAATTTTATGGATGATTTTTTGTGCCTACATGGACCAATATGTAGGAATGTGAAACTTGGCAACTTTTAAGTTTCTACTTTTTCTCTTAAATATGGTTTTATCTAAGTTTAATCAATTCAACTCTTAGCTTTTTCTTTTCTGTTCATGAGAATATATAGCTCTCTTGTTCAAATAAGTGCTATATCATACACATTATTTTGTAGGTATAAATCAAGGCATAATGCAAAATTCATGAATAGGGCTTTACAGAATGACAATGGATTTAATTACATATAGAAATGGTTGCATACATGAATTTACTAAAGACACTAATATGAATCTTCATATTTTGATGAAAACTCACATGCATTCATACTTAATGTTGGTTTCTTTCTTTTTTTATATACTTTTTTTACTAGTATAAATGTAATGCCCTAAGTTAGAATGGAGACATGATTGAACCGATATCACATCTAAATGCGAGAGATCTTACGACATAATCAAAGTAAGGTAAAAAATAATGACTTAAAAAAAGATAAAAGTCTATACCAACGAGGTACACCTTCATTGTGGAATTGATATCGCACGAAACGTAGGGGAATGTCAGGGTCTTCCATTGCTAAATCCTAGACTTTGAATCATAAATATGCAAAAGAGTTCTCATTTTTCTTGTGAGTAAATTAAAATATGATAAATCCGATTTCACAATACCAATACTTGAACATTTTCGTATAGCTGAAACTGTAAGAGTAGTGGTTTAGATCATGAAAAATATGGTTACACACAGCTTATTTGGTTACAAATTCCATCTCATTCTTTGCATCAGTAGTTAGTGTGATTATGTTCATTATAAGTGGTTTTGCTTTGAAAAGAATAGGATTTGTGCATATCGTCTTTGTTAACAATTGCTATGTGTGTTGCAGTTATGCATATCCTTGTCATATAGTTTCCTTAATGGGGGGTTTGGATATTATTAAATGTCTCAAATTGAAATTCCTATATATATGATTTGAAAGTAACATTTGTAGTTGCCATTATCTGTCATTTTGGAGTAGTTGTCGTTTCCTCTTTCTTAGGTATGTGGTGAAGCTTTTCACTTAGGTAGGCTTAGGGTAAAAGGGCTCATATATAGTATATACAATACCTTTGTCATCATTTCAGAGTTTTCAATATACATATATAGCTTCAACCATAAGTAGTTAGTTAGGTTAAACTTTAAAGATTGAGAGGGCTAATTGTAAAACAAATTAAGTACTTGTGGTGTGTGTTTGATCGTTTTTTTTTTTATATATATATTTTTGGATATGGATATTGTGGTGTGGTTTTTGTGTATTCACACGACAACAGAAACAGAATGAAAAATAATAATATAATAGAATTTACATTTTTCTACGATAAAGTGTTGAGAACAAGCTCTATTTTTCCTGAAGAATGAAGAGTTTTGGGCTATCAATCCTAGTGTTGTTATTTTTATTTTTACTTAGGATCTTCTTATCGTACATATTGTATCATCGGTTAGATCTACTTTTGTTATTAATTTTTTTTTGTATGTAACAAGTTTCGTAGTTTAGGGGTGGCTTATCTAGGTCAATGATATAGTTGATATTTTTTTTTCTTTTTGAAAATAGACTCTAAATTATCCTATTATTGTAGATTTGTAGTTAAAGAAAAACAAAAAAGAGTTTGGGCCTTTAGGTGGGGGACGAAGGTGGTGTAGTAGTGGGCCTGATAAGAGTGAAAGAAGCCCAAAAGAGTTAGGCGTGCTTTCGGTCGTTTCATCTTCTCCGAACTCTCGTCGTTAGCGTTAGTAACCCCAATTCCCAAAAAAACATTTTGTTGTTCTTGACTTGGTTGAGAATTTAGAAACCAAAAGCCGGAGGGGAAATTCTCGAATTCTTTTGTTGGTGTTCGCAGTGCGAGTGCGGGGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTTCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGGTTTCCCCCTTTTTCTCTATTCTCCATAAAATTACTCTTCCCAACTGGGTTTTCACTTTTATGTTGTTATCATGTCCTCCTTCTATTTTCAGAAATCTGGATGTTCTTTAACGCTTTTCGCCAACTGGGTATTTTTCGTATTGTGCGTTTGTGTGCTTTATCCTCTTTCTTCCACCTTACGTGGTTTCCTTGGGGGTTGGTGTCATTAGAATGATTGCTGTAGGACGCCCTTTCAATTTCATGCCCAATTGTTGTTTATGATTGTCATCTCAGGATACTAAATCAAAAAATCGTGTTCTATACTTTGTGTTTTTTTTCCTTTTCTCTTGGTTTCTATGGACTACAGCTCACAATACTGAAGGGTTTTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCCGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTAAAGCCGAAAGCTTTTTCTCTTTTTCCTGTATTGAACTTATGAGTGGCTTCTTGTTTCTTATGGATTTTGTGGGTGGTTCACTGAAGCTCAACCCGTTTCTGAGAAGAGGGAGATAACAATTTTATGAATGACACCAATGCTTAATATAGATTGCTCCCCTTTATGTTTTCTGATGTTCATTTTCCAATTGACTACATATCACCTTCGCTACTGTGAAAATGTTTAATTGTTCAAAACATGTTTCGTTCAACATGCTTAGAGTTTTGATTGAAGTTTAACTTATTCTAGTCAAATGATTACAGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCATCTACCAAGAAGGATGGTCGTGAGGGGACAATATACAAAGGTAATGATTAGTTAGTGAGAAGATGGAATAAGTGATTGCTCTTGTTTTGTAAATTTTCTTTTCTCGATGAAAGCAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCAAGTGCTGAAATACAATTGGAAAGGAAAGAAGCAGAGCAATCTGGTTTGTTATTATGTTCACTTACTGGATTATTGACATTACTTGCATTCGTAAAGTCATTACTCATTGCAAGATTGCCAAATATGTATATGATGTAAAATAGAGGGCCAAAAAGTTCCTGAATAGTCATTCTGTAACTTTGCAATGAACTGCCAGAGGGACACTATTAGCTCCAAATTTGGATGATTCTAGATGTTTTATGTATCCACTTTTGTTCTTAGGTGCTGCAAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTACGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGTGAGATTGCTGTATTCTTAATGGAATGGACCTGTATGTGTGCTATATTTTAGAAACTACTTGTTCACTAAAATGAAGGTTGGAACCAGTTAATTTTACTTTATTTTTTCTACTTCACAAGATATTGGTTCTGTCCATATAGAAATCAATATTAATACATTAACTGAGGTGACATTCCTCCGTTTGAATTTATCTGTTGCTTGTGTAATGATTTCAGTTTCTTTTCCTTTCATGTGGGTTAATTTCGTGCATTCTATGAATCCAAAGGGTCTTAGGATGGTTGCCTATGTGGTCTTGAAGATTTTTATTCCTCTTCTAACTTATAATATATCAATTTCTCATTATCTCATGCTAAGTGTTTTGATTCAATAGGGATCTTCAGTACCTCGGAAGGTTAAAAGGGGTGGGGCAGCATCATCTAGAAAGCCTGAGTCAAATTCCATGAAGCGAGGGATGGAGAAAAAGAAGGCATGTGCTACTTTCAATGTTTTTCTTTTCCTAACGTTATAAGATCCCAAGTGTTGATTTGTTACTTGCTAGTGTCTTCACTATTTCTGCCCTATTGTTTTTGGGAAAATAAGCTTTATTGGCTTGTCGTAGATCCAAGGGGTAAGGCAGTATTTTTAACTAACAAATGCCGTAAGGAGAATTACAAAAGTTCTTGGTTACATATGCCTAAAGAGAGGCATCAAACCAGCATTTGTCTCAATCTCCTCCCAAGACCTCTCAAAACCCTTGCTCTTTAGTCAAGTATTCCATTAAAAAAAATCTAGTGAAATATTTTACAACCTTGATCACATAAGACCACAATCTATATTACAAACCAAACTTACTCTGAAGGCCTCGAGAAAAGTTGGAAATCAAGGCAGCAAACTGTCATCGCTAAAGGATGCGATGTGATCTAAATCCTCAAATGCTCCCCTACTACGAATGCATTGGTGCAGCCCGAACACAAAGGAAGATTGTCCCTGTATATAATCTTTTTTTTTTTTTTTTTTTGATAGGAAGCATCTCTGATATAATCTATAATGTCAACTACCTATTGCAAGTCCTTGCTTCTAATCATGCCACTCTAAAACCTTGACATTCTTGGAAGTTTCTTCCTTTACGGTGAGGTGGAGTTAAAAGTAATGATATTGATGGTGTTGAGTCGTTGACTGTGCAGAAACCAACCTAAACTGTATCCAACGAGACCACCTCAAGGTCATGAACCATGAATGTTGGAATTGATGGTTTAGTTTTTTGGCCCCTAGATGCATACTTGGCTATCCTTTTTCGTGAACAACTTGCGTCTTCTATATTTTTTGTCTGAAGGTTTTAGTTATAATTTCTGTTATACATGCAGTATATCTTAAAGGACAGTGTAAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTAGTGCCCAGGCGAGAGGATCAGTCCGCTACTTCAAGTGGAATTGGAATTTCAGATGTTGGTACAGGTATATCTATTTATGTCTTTGTGGTTGGCTAGGTCATCTAAATTGTCATGTTTTGTTCCAAGTTATTGATCCAAAATTTTATTAGTAGACTGTTGAGTATGAGTGATTTAAACTCTCTTATCAATTCAGTGTTACTAGTCATTGAGGAGCAGAGGAACGTTGCCTATTTGATTTAATCTATGAACACTTTATGCCCTACTCTGCTGCCAGCTTGCAATTTTAAATAACTTTTTCCAATGCATGCTTGTTATGATGGGACTTGTTTTGTTATTTTTCTTTCTGGAGGAGTTCTCAGAACTATTTTTCGTTTCTCCCATTTCAAATTACCCAGAGCCCTGTAGTAATGCTCTTGAAAATCTAATTTTTCTCCTTATTAATAATTATCACATTGTTTCTTGCTGGGATTTTTCCATATTGTGATGTGCAGGTTTTAGAATTATAATATTTGGACCTACATTTAACATAGGCACAATTGGCTTACCTTAAACACTTGGAAGTGATATATTTGAGAGATGGAAGGGGGCACCTTTGCTTTGTCTTATCAAATTATGTTTATCAGGAAAAGGAAAAAATAAACAAGGTCGTCCAGTAGATAACACATGTCTGAAATTTTGAATTATGTTCTTTTGCTGCATTGGACTTGCTACAAACTTATTTCTTTTAATTTATCAATATGTTCTACATGTTTATAATGAACTTGCAGTCTAGAATTTGAAGGCTCTATTTCATATGTATCTGTAACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAAGGAAAAGCGCGAGATATATCTCATGTATGTTTCTTTTGTTCTCTTGACTAATTATGTGATTACAACTTTTGTTTCTCTCTTCAGAACTATTTACTTCCATGAATGATTTCCAATCTCACTCGAGGCTTATTTTGGGAGGACACAAATTTCATTCTTTTTCCTTGAATTTTAACACCTATCCATTTGATGGATAATGATACTTTCCAGGTTTCTGATGACATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCATAGGCGTGAGGCTGGTGGAGGCGTGATCAGAAGCATTCTTTTAAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCAGTCTCATCAAAAGATTGAGATCCTGAAGTCAGACAACGGGAAGCGTCCACCTCGTCCCACTAATGCTCGATCTGGGTCTAATGATATCTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTTCAGACAATAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAGAAACGAATAAGAAACAAAGATAGACCTGATCGTGGAGTCTGGGCACCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTCCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGGTGCTCGACTATTATACTCCTTTGGAGAATGGAGATAAAGAGACTACTTGCTTATAATATACAATCATATTATTGAAGTATCAAACCTTAATCATTGTGTCAAATCATCCTGTCTGATGACCTGTGTATTTATACTGGTACTTAATGTTTCACATATGAAATTATGACCCTATATATCTTTATGCACTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTGCAACCATTGTGAGTGGGCGTAACAGTTCAGTGGAAAATGGTTGTACTTTCTCACATACTTTTCTTACGTTGTCCAACTATTTTAAGAAAATTTCCAAGTACTTTCTACTTTAGGTAATCTAAAACTCGTTGTGCTCTCTTTAGGTTCTGTTAGACATGTTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGGTTCGCTTCTGCATCCAAGCCAGTGTCTGTATTGTATTACACGATCACTTCTTTTAAAAATTCATTCTCTTTTATGGCTATGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAGCATAATTAAATCATGTGAGTTCTTTTACACATTAGCAATGTTTTTATCTCCTTTAAGAGCGTATCTTTTATGAGGTTTTTCTCTCTAGGGACATCCAACTGAATGACTGAGAAGTTCAAAATTAACTAAAGATTCTGGTTTGAAGTACATATAGCACATGTTAAATCCATTATGCTAACATTTGTCAGATACATAATTTGGCATGCAGCTCATGATAGTTTCATGGCTCTTAGCACTTTTAATATTCTTAGTACTCGATAATTTGGCATGTAAATTAGCTTGTTTATGGTAATGTCTTCTTGTATGTTTTAATTGTTATGAACTTCGTTATTTTATAATTATTTTTATAAGAAATAGGAAACGTCAAGTTAGTGAAAATGACAGAAAGGTCTAACAATCAACCAAAAGTTGGCATATACTGTTATTTCTTAAAGGATATGAGTGTGCAGTACATTAAAACATAACATGGACGGACAAATATATTAGAAGGGGGAAGTTTATTATTGTATGTCTTGCTATGAAGGATATTACTTATTACTACTATATTATTATTCTTTGGCTGAAAGATGTACTGCTCTACTACTATGACATTTAATGTAATTGCTCACTTCCCCATCTTCAATGCTGCCATGCATTCTCTTGGAATTCAGCATATGCCTGCTGTACAGTCATACTTTCACCGATCATTGGCTAGATATTGTTGTTTGTTTTGTCTTTAGGTCTTTTTGTTTATTATATTGACAAGGACGTGTATTGTTTTCCATGGGATCATGACCGTAACGATGTCTATGTTATTCAACAGATAGTGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGGAAGACTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

mRNA sequence

ATGGGGAGAGGAAAGATAGAGATAAAGAGAATAGAGAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAACTGCGTCAACAGATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCACGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTAGAGAGGGTTCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATACAAGCATTGGCTAACTCTCGCAATTTCTTCTCTCCCAATATTATGGAACCAACTGGACCTGTTTCTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGTGCGAGTGCGGGGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTTCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCCGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCATCTACCAAGAAGGATGGTCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCAAGTGCTGAAATACAATTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTACGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTTAAAAGGGGTGGGGCAGCATCATCTAGAAAGCCTGAGTCAAATTCCATGAAGCGAGGGATGGAGAAAAAGAAGTATATCTTAAAGGACAGTGTAAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTAGTGCCCAGGCGAGAGGATCAGTCCGCTACTTCAAGTGGAATTGGAATTTCAGATGTTGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAAGGAAAAGCGCGAGATATATCTCATGTTTCTGATGACATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCATAGGCGTGAGGCTGGTGGAGGCGTGATCAGAAGCATTCTTTTAAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCAGTCTCATCAAAAGATTGAGATCCTGAAGTCAGACAACGGGAAGCGTCCACCTCGTCCCACTAATGCTCGATCTGGGTCTAATGATATCTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTTCAGACAATAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAGAAACGAATAAGAAACAAAGATAGACCTGATCGTGGAGTCTGGGCACCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTCCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTGCAACCATTGTGAGTGGGCGTAACAGTTCAGTGGAAAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTTGTTTATTATATTGACAAGGACGTGTATTGTTTTCCATGGGATCATGACCGTAACGATGTCTATGTTATTCAACAGATAGTGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGGAAGACTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

Coding sequence (CDS)

ATGGGGAGAGGAAAGATAGAGATAAAGAGAATAGAGAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAACTGCGTCAACAGATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCACGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTAGAGAGGGTTCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATACAAGCATTGGCTAACTCTCGCAATTTCTTCTCTCCCAATATTATGGAACCAACTGGACCTGTTTCTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGTGCGAGTGCGGGGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTTCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCCGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCATCTACCAAGAAGGATGGTCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCCGAGCATCTTCCAAGTGCTGAAATACAATTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATCGTTACCCCTCTCATGGAGTTTGTACGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTTAAAAGGGGTGGGGCAGCATCATCTAGAAAGCCTGAGTCAAATTCCATGAAGCGAGGGATGGAGAAAAAGAAGTATATCTTAAAGGACAGTGTAAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTAGTGCCCAGGCGAGAGGATCAGTCCGCTACTTCAAGTGGAATTGGAATTTCAGATGTTGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAAGGAAAAGCGCGAGATATATCTCATGTTTCTGATGACATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCATAGGCGTGAGGCTGGTGGAGGCGTGATCAGAAGCATTCTTTTAAATAATGAAGCACGTCATGGACAGAGTTCATCAGTAGCTCAGTCTCATCAAAAGATTGAGATCCTGAAGTCAGACAACGGGAAGCGTCCACCTCGTCCCACTAATGCTCGATCTGGGTCTAATGATATCTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTTCAGACAATAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAGAAACGAATAAGAAACAAAGATAGACCTGATCGTGGAGTCTGGGCACCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTCCACAATCTAGTCATTTGCTTTCTGACTCAGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGACTGGGGATGTTGCAACCATTGTGAGTGGGCGTAACAGTTCAGTGGAAAATGGTTCTGTTAGACATGTTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTTGTTTATTATATTGACAAGGACGTGTATTGTTTTCCATGGGATCATGACCGTAACGATGTCTATGTTATTCAACAGATAGTGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGGAAGACTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

Protein sequence

MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALANSRNFFSPNIMEPTGPVSFSHQDKKMLHLGASAGGVFQMKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYIDKDVYCFPWDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFRELDWKTCNCFVVYRWLQNTRFSG*

Homology

[Close]

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-109
Identity = 252/530 (47.55%), Postives = 325/530 (61.32%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 413
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 414 RKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSG 473
           R  +R    S+ KP     KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNSSG 240

Query: 474 -----------IGISDVG---TADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSP 533
                      I  S  G   T D GKKKILLL+ K RD         +    T+   + 
Sbjct: 241 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRN- 300

Query: 534 ASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARS 593
           ++ S+ N + + GG +I+ ILL N++R  QSS+  QS Q++E  +++N KRP RP N R+
Sbjct: 301 STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRA 360

Query: 594 GSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR 653
           G                            K+ H  G+ SEKQE+R RNKDRPDR +WAP 
Sbjct: 361 G----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWAP- 420

Query: 654 SRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGS 713
            R D S  Q      P SS           GE+K+ +   R+G+V     G   ++ENGS
Sbjct: 421 -RRDGSEDQ------PLSS-------AGNNGEVKDRMFSQRSGEVVNSSGGH--TLENGS 480

Query: 714 VRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSG 746
            RH  RR  G   K++  +   EGK S+RG  GG   HEKQ+W+QK SSG
Sbjct: 481 ARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQKPSSG 481

[Close]

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.8e-93
Identity = 187/225 (83.11%), Postives = 203/225 (90.22%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR+YEYSNN
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +IK+TI+RYKKA SDS+   S  E+N QYYQQESAKLRQQIQMLQNSNRHLMGDSL++LT
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQLENRLERGITRIRSKKHE+LLAEIEYLQKREIELENE+V +RTKIAEVER+QQA
Sbjct: 121 VKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQA 180

Query: 181 NMVSGQELNAIQALANSRNFFSPNIMEPTGPVSFSHQDKKMLHLG 226
           NMVS  E NAIQAL  SRNFF PN++E  G   +   DKK+LHLG
Sbjct: 181 NMVSTHEFNAIQALV-SRNFFQPNMIE-GGSTGYPLPDKKVLHLG 223

[Close]

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.4e-92
Identity = 186/225 (82.67%), Postives = 202/225 (89.78%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR+YEYSNN
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +IK+TI+RYKKA SDS+   S  E+N QYYQQESAKLRQQIQMLQNSNRHLMGDSL++LT
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQLENRLERGITRIRSKKHE+LLAEIEYLQKREIELENE+V +RTKIAEVER+QQA
Sbjct: 121 VKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQA 180

Query: 181 NMVSGQELNAIQALANSRNFFSPNIMEPTGPVSFSHQDKKMLHLG 226
           NMVS  E NAIQAL  S NFF PN++E  G   +   DKK+LHLG
Sbjct: 181 NMVSTHEFNAIQALV-SLNFFQPNMIE-GGSAGYPLPDKKVLHLG 223

[Close]

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-84
Identity = 173/231 (74.89%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +I++TIERYKKACSDS+ TS+V E+N  YYQQESAKLRQQIQ +QNSNR+LMGDSLS+L+
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NEN+ +RTK+AEVER QQ 
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 180

Query: 181 N--MVSGQELNAIQALANSRNFFSPNIMEPTGPV----SFSHQDKKMLHLG 226
           +  MVSG E+NAI+ALA SRN+F+ +IM          S+S  DKK+LHLG
Sbjct: 181 HHQMVSGSEINAIEALA-SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 230

[Close]

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot
Match: Q93XH4 (Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.6e-73
Identity = 149/226 (65.93%), Postives = 185/226 (81.86%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           S++TTIERYKK CSDSS T SV+E N Q+YQQE++KLR+QI+ +QN NRH++G++LS+L 
Sbjct: 61  SVRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLN 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERV-QQ 180
            KELK LE RLE+GI+RIRSKK+E+L AEIEY+QKREIEL+N N+ +R +IAE ER  QQ
Sbjct: 121 FKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQQQ 180

Query: 181 ANMVSGQELNAI-QALANSRNFFSPNIMEPTGPVSFSHQDKKMLHL 225
            N++ G +  ++ Q   +S+N    N+++P     +S  D+  L L
Sbjct: 181 MNLMPGSQYESVPQQPYDSQNLLPVNLLDPNH--HYSRHDQTALQL 224

[Close]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL
Match: A0A0A0KSY5 (Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=3 SV=1)

HSP 1 Score: 972.2 bits (2512), Expect = 1.4e-279
Identity = 506/512 (98.83%), Postives = 508/512 (99.22%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
           TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 413
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 414 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI 473
           KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS I
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSAI 240

Query: 474 GISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 533
           GISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG
Sbjct: 241 GISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 300

Query: 534 VIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGS 593
           VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSGSNDISSNEPNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 594 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 653
           EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
Sbjct: 361 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 654 PQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKD 713
           PQSSHLLSDSVEA+RGEMKEDIHGSRTGDV TIVSGRNSSVENGSVRHVGRRGAGHVMKD
Sbjct: 421 PQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

Query: 714 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 746
           DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL
Match: A0A5D3BML0 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00280 PE=3 SV=1)

HSP 1 Score: 970.3 bits (2507), Expect = 5.2e-279
Identity = 513/564 (90.96%), Postives = 517/564 (91.67%), Query Frame = 0


Query: 280 SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 339
           +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 340 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 399
           GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK
Sbjct: 108 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 167

Query: 400 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL 459
           RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL
Sbjct: 168 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL 227

Query: 460 VPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPA 519
           VPRR+DQSA SSGIGISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPA
Sbjct: 228 VPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPA 287

Query: 520 SASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSG 579
           SASKHNHRREAGG VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSG
Sbjct: 288 SASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSG 347

Query: 580 SNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRS 639
           SNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRS
Sbjct: 348 SNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNKDRPDRGVWAPRS 407

Query: 640 RSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSV 699
           RSDASVSQLEESSV QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNSSVENGSV
Sbjct: 408 RSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSV 467

Query: 700 RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYIDKDVYCFP 759
           RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE                         
Sbjct: 468 RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE------------------------- 527

Query: 760 WDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF 819
                        IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF
Sbjct: 528 -------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF 573

Query: 820 RELDWKTCNCFVVYRWLQNTRFSG 844
           RELD KTCNCFVVYRWLQNTRFSG
Sbjct: 588 RELDCKTCNCFVVYRWLQNTRFSG 573

[Close]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL
Match: A0A1S3CB69 (regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 961.4 bits (2484), Expect = 2.4e-276
Identity = 501/512 (97.85%), Postives = 503/512 (98.24%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
           TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 413
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 414 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI 473
           KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 474 GISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 533
           GISDVG ADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGG 
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGS 300

Query: 534 VIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGS 593
           VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSGSNDISSNEPNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 594 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 653
           EGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 654 PQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKD 713
            QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNSSVENGSVRHVGRRGAGHVMKD
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

Query: 714 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 746
           DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL
Match: A0A5A7TD91 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00280 PE=3 SV=1)

HSP 1 Score: 954.5 bits (2466), Expect = 2.9e-274
Identity = 513/572 (89.69%), Postives = 517/572 (90.38%), Query Frame = 0


Query: 280 SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 339
           +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 340 GREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 399
           GREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ
Sbjct: 108 GREGTIYKADPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 167

Query: 400 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK------YILKDSVKNTNRR 459
           KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK      YILKDSVKNTNRR
Sbjct: 168 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRR 227

Query: 460 DKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSAT 519
           DKSNFILVPRR+DQSA SSGIGISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSAT
Sbjct: 228 DKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSAT 287

Query: 520 SSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPR 579
           SSGNSPASASKHNHRREAGG VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPR
Sbjct: 288 SSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPR 347

Query: 580 PTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDR 639
           PTNARSGSNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQ+KRIRNKDRPDR
Sbjct: 348 PTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNKDRPDR 407

Query: 640 GVWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNS 699
           GVWAPRSRSDASVSQLEESSV QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNS
Sbjct: 408 GVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNS 467

Query: 700 SVENG-SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYI 759
           SVENG SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE                 
Sbjct: 468 SVENGCSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE----------------- 527

Query: 760 DKDVYCFPWDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE 819
                                IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE
Sbjct: 528 ---------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE 581

Query: 820 AVGNSNRFRELDWKTCNCFVVYRWLQNTRFSG 844
           AVGNSNRFRELD KTCNCFVVYRWLQNTRFSG
Sbjct: 588 AVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 581

[Close]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL
Match: A0A1S3CBX5 (regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 941.4 bits (2432), Expect = 2.6e-270
Identity = 494/512 (96.48%), Postives = 496/512 (96.88%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
           TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 413
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 414 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI 473
           KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 474 GISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 533
           GISDVG ADFGKKKILLLKGK RDISH       LQSATSSGNSPASASKHNHRREAGG 
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISH-------LQSATSSGNSPASASKHNHRREAGGS 300

Query: 534 VIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGS 593
           VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSGSNDISSNEPNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 594 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 653
           EGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 654 PQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKD 713
            QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNSSVENGSVRHVGRRGAGHVMKD
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

Query: 714 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 746
           DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 505

[Close]

BLAST of Chy9G157340.1 vs. NCBI nr
Match: KAG7037154.1 (Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1128 bits (2918), Expect = 0.0
Identity = 627/835 (75.09%), Postives = 655/835 (78.44%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           S                                            N  RHLMGDSLSALT
Sbjct: 61  S--------------------------------------------NLVRHLMGDSLSALT 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVER+ QA
Sbjct: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQA 180

Query: 181 NMVSGQELNAIQALANSRNFFSPNIMEPTGPVSFSHQDKKMLHLGASAGGVFQMKDPLER 240
           NM SGQELNAIQALA SRNFFSPNIME                     GG   MKDPLER
Sbjct: 181 NMESGQELNAIQALA-SRNFFSPNIME---------------------GGA--MKDPLER 240

Query: 241 TKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVF 300
           TKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDFT PEDVF
Sbjct: 241 TKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVF 300

Query: 301 EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAK 360
           EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLEFLKLIAK
Sbjct: 301 EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAK 360

Query: 361 PAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGA 420
           P EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ             
Sbjct: 361 PTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------------- 420

Query: 421 ASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVGT 480
                              YILKDS KNTNRRDKSNFILVPRREDQSATSSGIGISDVGT
Sbjct: 421 -------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGT 480

Query: 481 ADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGGVIRSILL 540
           AD GKKKILLLKGK RD+SH++D MLQ QSATSSGNSPA+A+K N RREAGG +IRSILL
Sbjct: 481 ADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILL 540

Query: 541 NNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRA 600
           NN+ARHGQSSSVAQSHQKI+IL SDNGKRPPRP N+RSGSND+SSN+PNPSGSEGDGKR 
Sbjct: 541 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRG 600

Query: 601 SDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVPQSSHLL 660
            +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV QS+HLL
Sbjct: 601 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 660

Query: 661 SDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKDDGSLNPN 720
           SDSVEAYRGEMK+D+HGSRTGDV T VSGR+SSVENG VRHVGRRGA H+MKDDGSLNPN
Sbjct: 661 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKDDGSLNPN 710

Query: 721 EGKPSKRGVAGGHEKQVWVQKSSSGLFVYYIDKDVYCFPWDHDRNDVYVIQQIVASRQDY 780
           EGKPSKRGVAGGHEKQVWVQKSSS       D  +    W                +   
Sbjct: 721 EGKPSKRGVAGGHEKQVWVQKSSS-------DNGIQTGLW--------------FLKLPG 710

Query: 781 GSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRFRELDWKTCNCFVVYRW 835
           G S F    L  +        HHVKWRYALEAVGNSNRFRELD K CNCFVVYRW
Sbjct: 781 GLSPF----LRIKKCTSSEGIHHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW 710

[Close]

BLAST of Chy9G157340.1 vs. NCBI nr
Match: TYK00427.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 972 bits (2513), Expect = 0.0
Identity = 513/564 (90.96%), Postives = 517/564 (91.67%), Query Frame = 0


Query: 280 SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 339
           +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 340 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 399
           GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK
Sbjct: 108 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 167

Query: 400 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL 459
           RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL
Sbjct: 168 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFIL 227

Query: 460 VPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPA 519
           VPRR+DQSA SSGIGISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPA
Sbjct: 228 VPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPA 287

Query: 520 SASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSG 579
           SASKHNHRREAGG VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSG
Sbjct: 288 SASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSG 347

Query: 580 SNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRS 639
           SNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQ+KRIRNKDRPDRGVWAPRS
Sbjct: 348 SNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNKDRPDRGVWAPRS 407

Query: 640 RSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSV 699
           RSDASVSQLEESSV QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNSSVENGSV
Sbjct: 408 RSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSV 467

Query: 700 RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYIDKDVYCFP 759
           RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE                         
Sbjct: 468 RHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE------------------------- 527

Query: 760 WDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF 819
                        IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF
Sbjct: 528 -------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALEAVGNSNRF 573

Query: 820 RELDWKTCNCFVVYRWLQNTRFSG 843
           RELD KTCNCFVVYRWLQNTRFSG
Sbjct: 588 RELDCKTCNCFVVYRWLQNTRFSG 573

[Close]

BLAST of Chy9G157340.1 vs. NCBI nr
Match: XP_011656113.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus])

HSP 1 Score: 972 bits (2512), Expect = 0.0
Identity = 506/512 (98.83%), Postives = 508/512 (99.22%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
           TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 413
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 414 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI 473
           KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSS I
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSAI 240

Query: 474 GISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 533
           GISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG
Sbjct: 241 GISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 300

Query: 534 VIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGS 593
           VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSGSNDISSNEPNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 594 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 653
           EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
Sbjct: 361 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 654 PQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKD 713
           PQSSHLLSDSVEA+RGEMKEDIHGSRTGDV TIVSGRNSSVENGSVRHVGRRGAGHVMKD
Sbjct: 421 PQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

Query: 714 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 745
           DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of Chy9G157340.1 vs. NCBI nr
Match: XP_008459659.1 (PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo])

HSP 1 Score: 961 bits (2484), Expect = 0.0
Identity = 501/512 (97.85%), Postives = 503/512 (98.24%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
           TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 413
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 414 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGI 473
           KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 474 GISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGG 533
           GISDVG ADFGKKKILLLKGK RDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGG 
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGS 300

Query: 534 VIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARSGSNDISSNEPNPSGS 593
           VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPRPTNARSGSNDISSNEPNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 594 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 653
           EGDGKRA DNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 654 PQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGSVRHVGRRGAGHVMKD 713
            QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNSSVENGSVRHVGRRGAGHVMKD
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

Query: 714 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 745
           DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 DGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of Chy9G157340.1 vs. NCBI nr
Match: KAA0039239.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 956 bits (2472), Expect = 0.0
Identity = 513/572 (89.69%), Postives = 517/572 (90.38%), Query Frame = 0


Query: 280 SQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 339
           +QKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 340 GREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 399
           GREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ
Sbjct: 108 GREGTIYKADPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 167

Query: 400 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK------YILKDSVKNTNRR 459
           KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK      YILKDSVKNTNRR
Sbjct: 168 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACATFNYILKDSVKNTNRR 227

Query: 460 DKSNFILVPRREDQSATSSGIGISDVGTADFGKKKILLLKGKARDISHVSDDMLQLQSAT 519
           DKSNFILVPRR+DQSA SSGIGISDVGTADFGKKKILLLKGK RDISHVSDDMLQLQSAT
Sbjct: 228 DKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSAT 287

Query: 520 SSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPR 579
           SSGNSPASASKHNHRREAGG VIRSILLNNEARHGQSSSVAQSHQKI+IL SDNGKRPPR
Sbjct: 288 SSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPR 347

Query: 580 PTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDR 639
           PTNARSGSNDISSNEPNPSGSEGDGKRA DNKFSKKELHGLGSASEKQ+KRIRNKDRPDR
Sbjct: 348 PTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNKDRPDR 407

Query: 640 GVWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNS 699
           GVWAPRSRSDASVSQLEESSV QSSHLLSDSVEAYRGEMKEDIHGSRT DV TIVSGRNS
Sbjct: 408 GVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNS 467

Query: 700 SVENG-SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFVYYI 759
           SVENG SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE                 
Sbjct: 468 SVENGCSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE----------------- 527

Query: 760 DKDVYCFPWDHDRNDVYVIQQIVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE 819
                                IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE
Sbjct: 528 ---------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRYALE 581

Query: 820 AVGNSNRFRELDWKTCNCFVVYRWLQNTRFSG 843
           AVGNSNRFRELD KTCNCFVVYRWLQNTRFSG
Sbjct: 588 AVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 581

[Close]

BLAST of Chy9G157340.1 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 399.1 bits (1024), Expect = 9.1e-111
Identity = 252/530 (47.55%), Postives = 325/530 (61.32%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 293
           MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 294 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 353
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 354 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 413
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 414 RKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSG 473
           R  +R    S+ KP     KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNSSG 240

Query: 474 -----------IGISDVG---TADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGNSP 533
                      I  S  G   T D GKKKILLL+ K RD         +    T+   + 
Sbjct: 241 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRN- 300

Query: 534 ASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNARS 593
           ++ S+ N + + GG +I+ ILL N++R  QSS+  QS Q++E  +++N KRP RP N R+
Sbjct: 301 STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRA 360

Query: 594 GSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR 653
           G                            K+ H  G+ SEKQE+R RNKDRPDR +WAP 
Sbjct: 361 G----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWAP- 420

Query: 654 SRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVENGS 713
            R D S  Q      P SS           GE+K+ +   R+G+V     G   ++ENGS
Sbjct: 421 -RRDGSEDQ------PLSS-------AGNNGEVKDRMFSQRSGEVVNSSGGH--TLENGS 480

Query: 714 VRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSG 746
            RH  RR  G   K++  +   EGK S+RG  GG   HEKQ+W+QK SSG
Sbjct: 481 ARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQKPSSG 481

[Close]

BLAST of Chy9G157340.1 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 392.5 bits (1007), Expect = 8.5e-109
Identity = 251/532 (47.18%), Postives = 324/532 (60.90%), Query Frame = 0


Query: 234 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYI 293
           MK+PL++ KVV+RHLPPSLS SDL   I  RFA R+NW  +RPGK+    K+Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 294 DFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDY 353
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 354 LEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SS 413
           LEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S 
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 414 VPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATS 473
           + R  +R    S+ KP     KR  EKKKY+ K+S KN  R+  ++ +   + + + + S
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNS 240

Query: 474 SG-----------IGISDVG---TADFGKKKILLLKGKARDISHVSDDMLQLQSATSSGN 533
           SG           I  S  G   T D GKKKILLL+ K RD         +    T+   
Sbjct: 241 SGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSR 300

Query: 534 SPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIEILKSDNGKRPPRPTNA 593
           + ++ S+ N + + GG +I+ ILL N++R  QSS+  QS Q++E  +++N KRP RP N 
Sbjct: 301 N-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANT 360

Query: 594 RSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWA 653
           R+G                            K+ H  G+ SEKQE+R RNKDRPDR +WA
Sbjct: 361 RAG----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWA 420

Query: 654 PRSRSDASVSQLEESSVPQSSHLLSDSVEAYRGEMKEDIHGSRTGDVATIVSGRNSSVEN 713
           P  R D S  Q      P SS           GE+K+ +   R+G+V     G   ++EN
Sbjct: 421 P--RRDGSEDQ------PLSS-------AGNNGEVKDRMFSQRSGEVVNSSGGH--TLEN 480

Query: 714 GSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQKSSSG 746
           GS RH  RR  G   K++  +   EGK S+RG  GG   HEKQ+W+QK SSG
Sbjct: 481 GSARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQKPSSG 483

[Close]

BLAST of Chy9G157340.1 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 316.2 bits (809), Expect = 7.8e-86
Identity = 173/231 (74.89%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +I++TIERYKKACSDS+ TS+V E+N  YYQQESAKLRQQIQ +QNSNR+LMGDSLS+L+
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NEN+ +RTK+AEVER QQ 
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 180

Query: 181 N--MVSGQELNAIQALANSRNFFSPNIMEPTGPV----SFSHQDKKMLHLG 226
           +  MVSG E+NAI+ALA SRN+F+ +IM          S+S  DKK+LHLG
Sbjct: 181 HHQMVSGSEINAIEALA-SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 230

[Close]

BLAST of Chy9G157340.1 vs. TAIR 10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 316.2 bits (809), Expect = 7.8e-86
Identity = 173/231 (74.89%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 27  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +I++TIERYKKACSDS+ TS+V E+N  YYQQESAKLRQQIQ +QNSNR+LMGDSLS+L+
Sbjct: 87  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 146

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQA 180
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NEN+ +RTK+AEVER QQ 
Sbjct: 147 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 206

Query: 181 N--MVSGQELNAIQALANSRNFFSPNIMEPTGPV----SFSHQDKKMLHLG 226
           +  MVSG E+NAI+ALA SRN+F+ +IM          S+S  DKK+LHLG
Sbjct: 207 HHQMVSGSEINAIEALA-SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 256

[Close]

BLAST of Chy9G157340.1 vs. TAIR 10
Match: AT4G09960.4 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 310.5 bits (794), Expect = 4.3e-84
Identity = 173/235 (73.62%), Postives = 202/235 (85.96%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  SIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALT 120
           +I++TIERYKKACSDS+ TS+V E+N  YYQQESAKLRQQIQ +QNSNR+LMGDSLS+L+
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKR----EIELENENVCIRTKIAEVER 180
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKR    EIEL+NEN+ +RTK+AEVER
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKRLILQEIELDNENIYLRTKVAEVER 180

Query: 181 VQQAN--MVSGQELNAIQALANSRNFFSPNIMEPTGPV----SFSHQDKKMLHLG 226
            QQ +  MVSG E+NAI+ALA SRN+F+ +IM          S+S  DKK+LHLG
Sbjct: 181 YQQHHHQMVSGSEINAIEALA-SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 234

The following BLAST results are available for this feature:

BLAST of Chy9G157340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVW4	1.3e-109	47.55	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
F6I457	3.8e-93	83.11	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]
A0A217EJJ0	2.4e-92	82.67	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]
Q38836	1.1e-84	74.89	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
Q93XH4	5.6e-73	65.93	Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=...	[more]

BLAST of Chy9G157340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY5	1.4e-279	98.83	Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 P...	[more]
A0A5D3BML0	5.2e-279	90.96	Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3CB69	2.4e-276	97.85	regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7TD91	2.9e-274	89.69	Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3CBX5	2.6e-270	96.48	regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Chy9G157340.1 vs. NCBI nr


Match Name	Identity	Description
KAG7037154.1	75.09	Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. a...	[more]
TYK00427.1	90.96	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011656113.1	98.83	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus]	[more]
XP_008459659.1	97.85	PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]	[more]
KAA0039239.1	89.69	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Chy9G157340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33980.1	9.1e-111	47.55	Smg-4/UPF3 family protein	[more]
AT1G33980.2	8.5e-109	47.18	Smg-4/UPF3 family protein	[more]
AT4G09960.1	7.8e-86	74.89	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	7.8e-86	74.89	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.4	4.3e-84	73.62	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 707..734
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 640..660
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 597..636
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..529
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 571..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 561..660
None	No IPR available	PANTHER	PTHR13112:SF5	REGULATOR OF NONSENSE TRANSCRIPTS UPF3	coord: 234..745
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 242..327 e-value: 7.54316E-33 score: 120.05
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 72.99 coord: 38..59 score: 64.74 coord: 23..38 score: 86.34
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.3E-42 score: 157.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 7.8E-26 score: 89.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 34.089954
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..104 e-value: 1.2E-27 score: 97.8
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..77
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 239..401 e-value: 1.4E-50 score: 171.7
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 86..171 e-value: 9.2E-26 score: 89.9
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 87..177 score: 15.511216
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 234..330 e-value: 1.5E-31 score: 110.6
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 234..745
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..76 e-value: 5.53643E-43 score: 148.469
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 241..330

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy9G157340	Chy9G157340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G157340.1.exon20	Chy9G157340.1.exon20	exon
Chy9G157340.1.exon19	Chy9G157340.1.exon19	exon
Chy9G157340.1.exon18	Chy9G157340.1.exon18	exon
Chy9G157340.1.exon17	Chy9G157340.1.exon17	exon
Chy9G157340.1.exon16	Chy9G157340.1.exon16	exon
Chy9G157340.1.exon15	Chy9G157340.1.exon15	exon
Chy9G157340.1.exon14	Chy9G157340.1.exon14	exon
Chy9G157340.1.exon13	Chy9G157340.1.exon13	exon
Chy9G157340.1.exon12	Chy9G157340.1.exon12	exon
Chy9G157340.1.exon11	Chy9G157340.1.exon11	exon
Chy9G157340.1.exon10	Chy9G157340.1.exon10	exon
Chy9G157340.1.exon9	Chy9G157340.1.exon9	exon
Chy9G157340.1.exon8	Chy9G157340.1.exon8	exon
Chy9G157340.1.exon7	Chy9G157340.1.exon7	exon
Chy9G157340.1.exon6	Chy9G157340.1.exon6	exon
Chy9G157340.1.exon5	Chy9G157340.1.exon5	exon
Chy9G157340.1.exon4	Chy9G157340.1.exon4	exon
Chy9G157340.1.exon3	Chy9G157340.1.exon3	exon
Chy9G157340.1.exon2	Chy9G157340.1.exon2	exon
Chy9G157340.1.exon1	Chy9G157340.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G157340.1.cds20	Chy9G157340.1.cds20	CDS
Chy9G157340.1.cds19	Chy9G157340.1.cds19	CDS
Chy9G157340.1.cds18	Chy9G157340.1.cds18	CDS
Chy9G157340.1.cds17	Chy9G157340.1.cds17	CDS
Chy9G157340.1.cds16	Chy9G157340.1.cds16	CDS
Chy9G157340.1.cds15	Chy9G157340.1.cds15	CDS
Chy9G157340.1.cds14	Chy9G157340.1.cds14	CDS
Chy9G157340.1.cds13	Chy9G157340.1.cds13	CDS
Chy9G157340.1.cds12	Chy9G157340.1.cds12	CDS
Chy9G157340.1.cds11	Chy9G157340.1.cds11	CDS
Chy9G157340.1.cds10	Chy9G157340.1.cds10	CDS
Chy9G157340.1.cds9	Chy9G157340.1.cds9	CDS
Chy9G157340.1.cds8	Chy9G157340.1.cds8	CDS
Chy9G157340.1.cds7	Chy9G157340.1.cds7	CDS
Chy9G157340.1.cds6	Chy9G157340.1.cds6	CDS
Chy9G157340.1.cds5	Chy9G157340.1.cds5	CDS
Chy9G157340.1.cds4	Chy9G157340.1.cds4	CDS
Chy9G157340.1.cds3	Chy9G157340.1.cds3	CDS
Chy9G157340.1.cds2	Chy9G157340.1.cds2	CDS
Chy9G157340.1.cds1	Chy9G157340.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy9G157340.1	Chy9G157340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045727	positive regulation of translation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003729	mRNA binding