Chy6G122410.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy6G122410.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 19915063 .. 19915878 (-)
Sequence length725
RNA-Seq ExpressionChy6G122410.1
SyntenyChy6G122410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGGTAAAACAAACAACAAATTTCATAATTCAATCCAACATTTTAATTTTCTTTTATTTTTTATTAATGGGATTTTTTACAATTTAATTTTCAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

mRNA sequence

GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

Coding sequence (CDS)

GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

Protein sequence

ERLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMSEKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRRIQAVKSRRGVFQVKNTVTPHPRRR*TKSSNLYQKRAMISLHTQKRHYNKTTL*INSTLKFLRTLYIPIGRVWPGFTQCRNSVPSTIREHSISTTTITPSLICMFLQLHRRFARWIIRQRRRSVIRRNKGTAADYSDSANX
Homology
[Close]
BLAST of Chy6G122410.1 vs. ExPASy TrEMBL
Match: A0A3P5ZLG4 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T01805Z PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0 

Query: 2   RLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMS 61
           +L  G+RNGT  AQETGNIQTG DQ   P +V GR+ V  +SS R    S LK+LWFS  
Sbjct: 46  KLCLGRRNGTSLAQETGNIQTGQDQIELPGQVIGRQRVPTRSSCRMVNVSGLKKLWFSTP 105

Query: 62  EKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRR 103
            KL++ +K+ GLC SI         EAPSW IG YV   R+
Sbjct: 106 GKLQKARKQTGLCTSIDSSSILVAMEAPSWMIGCYVESTRK 146

[Close]
BLAST of Chy6G122410.1 vs. NCBI nr
Match: VDC75303.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 85.5 bits (210), Expect = 2.14e-16
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0 

Query: 2   RLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMS 61
           +L  G+RNGT  AQETGNIQTG DQ   P +V GR+ V  +SS R    S LK+LWFS  
Sbjct: 46  KLCLGRRNGTSLAQETGNIQTGQDQIELPGQVIGRQRVPTRSSCRMVNVSGLKKLWFSTP 105

Query: 62  EKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRR 102
            KL++ +K+ GLC SI         EAPSW IG YV   R+
Sbjct: 106 GKLQKARKQTGLCTSIDSSSILVAMEAPSWMIGCYVESTRK 146

The following BLAST results are available for this feature:
BLAST of Chy6G122410.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G122410.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3P5ZLG41.1e-1350.50Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T01805Z PE=4 SV=... [more]
BLAST of Chy6G122410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
VDC75303.12.14e-1650.50unnamed protein product [Brassica rapa][more]
BLAST of Chy6G122410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy6G122410Chy6G122410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G122410.1.exon2Chy6G122410.1.exon2exon
Chy6G122410.1.exon1Chy6G122410.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G122410.1.cds2Chy6G122410.1.cds2CDS
Chy6G122410.1.cds1Chy6G122410.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy6G122410.1Chy6G122410.1-proteinpolypeptide