Chy6G122410 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G122410
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 19915063 .. 19915878 (-)
RNA-Seq Expression	Chy6G122410
Synteny	Chy6G122410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGGTAAAACAAACAACAAATTTCATAATTCAATCCAACATTTTAATTTTCTTTTATTTTTTATTAATGGGATTTTTTACAATTTAATTTTCAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

mRNA sequence

GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

Coding sequence (CDS)

GAAAGGCTTTATTCGGGGAAAAGGAATGGTACTTTTTCAGCCCAAGAGACCGGAAATATCCAAACGGGTCTAGACCAAACCGGGTAGCCGGTTCGGGTTACTGGAAGGCGACTGGTACGGATAAAATCATCTCGTCGGAAGGGAAGAACGTCGGAATTAAAAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCGAAGGGAACAAAAACGAATTGGATTATGCATGAGTATCGCCTTATTACATCCTCCAGAAAGACAGGAAGCTCCAAGCTGGACGATTGGGTTTTATGTCGGATTTATAAGAAGAATTCAAGCTGTCAAAAGCCGACGGGGAGTATTTCAAGTAAAGAATACAGTAACGCCTCACCCTCGTCGTCGATAGACGAAGTCATCGAATCTCTACCAGAAACGGGCGATGATTTCTTTGCATACCCAAAAACGACATTACAACAAAACGACATTATGAATAAATTCAACTTTGAAATTCCTGCGGACTCTGTACATTCCGATTGGGCGAGTTTGGCCGGGCTTTACTCAGTGCCGGAACTCGGTCCCGTCGACCATTCGGGAACATTCGATTTCAACAACAACAATAACACCATCGCTGATCTGTATGTTCCTTCAGTTACATCGCCGTTTTGCCAGGTGGATTATCCGCCAGCGTCGGCGTTCCGTTATTCGACGCAACAAAGGGACGGCGGCGGATTATTCGGATTCAGCCAATGA

Protein sequence

ERLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMSEKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRRIQAVKSRRGVFQVKNTVTPHPRRR*TKSSNLYQKRAMISLHTQKRHYNKTTL*INSTLKFLRTLYIPIGRVWPGFTQCRNSVPSTIREHSISTTTITPSLICMFLQLHRRFARWIIRQRRRSVIRRNKGTAADYSDSANX

Homology

[Close]

BLAST of Chy6G122410 vs. ExPASy TrEMBL
Match: A0A3P5ZLG4 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T01805Z PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 2   RLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMS 61
           +L  G+RNGT  AQETGNIQTG DQ   P +V GR+ V  +SS R    S LK+LWFS  
Sbjct: 46  KLCLGRRNGTSLAQETGNIQTGQDQIELPGQVIGRQRVPTRSSCRMVNVSGLKKLWFSTP 105

Query: 62  EKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRR 103
            KL++ +K+ GLC SI         EAPSW IG YV   R+
Sbjct: 106 GKLQKARKQTGLCTSIDSSSILVAMEAPSWMIGCYVESTRK 146

[Close]

BLAST of Chy6G122410 vs. NCBI nr
Match: VDC75303.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 85.5 bits (210), Expect = 2.14e-16
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 2   RLYSGKRNGTFSAQETGNIQTGLDQTG*PVRVTGRRLVRIKSSRRKGRTSELKRLWFSMS 61
           +L  G+RNGT  AQETGNIQTG DQ   P +V GR+ V  +SS R    S LK+LWFS  
Sbjct: 46  KLCLGRRNGTSLAQETGNIQTGQDQIELPGQVIGRQRVPTRSSCRMVNVSGLKKLWFSTP 105

Query: 62  EKLRREQKRIGLCMSIALLHPPERQEAPSWTIGFYVGFIRR 102
            KL++ +K+ GLC SI         EAPSW IG YV   R+
Sbjct: 106 GKLQKARKQTGLCTSIDSSSILVAMEAPSWMIGCYVESTRK 146

The following BLAST results are available for this feature:

BLAST of Chy6G122410 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G122410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P5ZLG4	1.1e-13	50.50	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T01805Z PE=4 SV=...	[more]

BLAST of Chy6G122410 vs. NCBI nr


Match Name	E-value	Identity	Description
VDC75303.1	2.14e-16	50.50	unnamed protein product [Brassica rapa]	[more]

BLAST of Chy6G122410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G122410.1	Chy6G122410.1	mRNA