Chy6G111100.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G111100.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 3943454 .. 3943932 (+)
Sequence length	205
RNA-Seq Expression	Chy6G111100.1
Synteny	Chy6G111100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATATCTGAGGCTTGGATGAATCGTTTGCAATGGTCTCTAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTCCCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCAAACAAATTGAGGGGCTAGTAAAAGCAAACCATCTTCCCAAGAACATGAAGCCACATAAAATCTAAGAAGTATTTATATGCCTAGGTTAAGAAAAACAACACAACCTGTAACGAATGAATTAACTCATTGAAGCATAGCATCAAACAGATGGTCTGCATTAAACGAATGAATCGAAAGGCATTGCAAAACCTATTCTCAGTCGGAGCCGCAAGCTGCAAGCAAAACATGAACATGTTTCCCAAAGAGATGAAAGAAAATAAACCATACTTGATTCAAGCTGTAATGTCCTAGGATTCAGAATCTGGATTCGGTATTTGATGGTCCTCCCACTCTCCTACCATTCCAAGGGTACTCAACCTAA

mRNA sequence

ATGGGGATATCTGAGGCTTGGATGAATCGTTTGCAATGGTCTCTAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTCCCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCAAACAAATTGAGGGGCTAGATTCAGAATCTGGATTCGGTATTTGATGGTCCTCCCACTCTCCTACCATTCCAAGGGTACTCAACCTAA

Coding sequence (CDS)

ATGGGGATATCTGAGGCTTGGATGAATCGTTTGCAATGGTCTCTAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTCCCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCAAACAAATTGAGGGGCTAGATTCAGAATCTGGATTCGGTATTTGATGGTCCTCCCACTCTCCTACCATTCCAAGGGTACTCAACCTAA

Protein sequence

MGISEAWMNRLQWSLMTYPFILTSKASLRQCFCAKAAGLKQIEGLDSESGFGI*WSSHSPTIPRVLNLX

Homology

[Close]

BLAST of Chy6G111100.1 vs. ExPASy TrEMBL
Match: A0A0A0L7J7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146690 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.4e-19
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MGISEAWMNRLQWSLMTYPFILTSKASLRQCFCAKAAGLKQIEGLDSESGFGI 54
          MGISEAWM+RLQWS MTYPFILTSKA LRQCFCAKAAGL+QIEGLDSESGFG+
Sbjct: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGL 53

[Close]

BLAST of Chy6G111100.1 vs. NCBI nr
Match: KGN56984.1 (hypothetical protein Csa_010863 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 3.62e-27
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MGISEAWMNRLQWSLMTYPFILTSKASLRQCFCAKAAGLKQIEGLDSESGFGI 53
          MGISEAWM+RLQWS MTYPFILTSKA LRQCFCAKAAGL+QIEGLDSESGFG+
Sbjct: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGL 53

The following BLAST results are available for this feature:

BLAST of Chy6G111100.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G111100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7J7	4.4e-19	90.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146690 PE=4 SV=1	[more]

BLAST of Chy6G111100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56984.1	3.62e-27	90.57	hypothetical protein Csa_010863 [Cucumis sativus]	[more]

BLAST of Chy6G111100.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G111100	Chy6G111100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G111100.1.exon1	Chy6G111100.1.exon1	exon
Chy6G111100.1.exon2	Chy6G111100.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G111100.1.cds1	Chy6G111100.1.cds1	CDS
Chy6G111100.1.cds2	Chy6G111100.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G111100.1	Chy6G111100.1-protein	polypeptide