Chy5G099100.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy5G099100.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 12658777 .. 12663433 (+)
Sequence length478
RNA-Seq ExpressionChy5G099100.1
SyntenyChy5G099100.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTACAAAAAAAAAAAATTTAATGGGAAGCAAGAGCATGGAATTCCTCCACAATCCTTGTCGGGGGAGGCCATGTACCTTAAGCTGAAAGACATGATGTTTTCATGTGGGAAGAAGGGTGGGAAGACCGTGCATAATGAATGTGACAATGACTATTGGAAAAGAAGACCATAATTTTTCCAACAACCATATTGGAAACACTTGCATGTTCGACAATGTTTAGATGTTATGCATATTGAAAAAAATGTATGCATGAACATAGTGGGCACCTTGCTTGATATACCAGGAAAAAGTAAGGATGGGATGAATACTAGACTGGACTTGGTTGAAATAAAAATTAGACCAGAATTGGCACCAACATTTACCGGTTATAGAACTTACATCCCTGCAGCATGTTATACACTATCAAGAGAAGAGAAGTATCGATTTTGTAAGACTTTGTCAGAAATTAAAGTTCCAGAAGGTTATTCATCAAATACTAGTAGTCGTGTCTCTTTGGATGACTTAAAACTGACCGGCCTTAAGTCGTACGACTGCATGTTTTAATGCAGCAACTGCTTCCAATTGCAATACATTCAGTCTTACCGAAGAATGTGAGGTACATTATCAGTAGATTGTACTTTTTCTTCAACACGATTTGCGTCAAAAGTTTATCCGTCTCAGATCTTGATGCATTGCAAGAAGATATAGTTCTGACTTTATGCAATCTTTAGAATTATTTCCCACTCTCGTTCTTTACAATCATGGTTCACCTTGTCGTTCATCTCTTTAGAGAAGTAAAGCTTTGTGGACCTGTATATTTGCGGTGAATGTACCCATGTGAACGATGCATGAAAGTGTTGAAAAGTTATGTTCGCAATAGAACTCGACCGGAAGGATGCATTGCAGAAGTAAGCATATGTGAGGAGGCAGTTGAATTCTGTTCAGATTTTATTTCTGGATTAGATCCTATTGGACTTGGGTCACTCAATTCAAGGGCAGACATACAAGGCGATCGACCACTGTCAGCAGGAACATATGTCCAACAACTGAAGCAAGCACATCTTCATGTCTTACAGAACACTGGAGAAGTGCACCCATACGCTGAGTAAGTATTCGTATGATTATATACTGCCATTAATTTACCCTCAGGGACCATTTTAATCTATGAAACATTTTGTAGACAACATTTCAATCAATTAAAGATGGAAAATCGCAGAAGAGCCAAAAATGAACAATGGCTACAAGTTGAACATAATCGATCATTTTGTGCATGGTTTAGGGATTAGGTACTTAAACAATCAAAATTCATTTTCGTTTCATCTAATTGTTCAATATTTAGAACAACTAACTGCTCTATTCAATAGGTGATGAGTGAACTACAGGAAGGAAAGGTTCTCTCGAACACCATACGTTGGCTTGCACATGGACCCCACCCTGCTTTAATGACGTACGACGGGTACATAATTAATGGAACGTCTTACCACACAAAGTCTTGTGATGACCATCGAAAGGTTCAAAACAGTGGGATTATGTTAGTCGCAACAACAATGCAAGTGTCTAGTGCGAAGGACAAAAACCTGATCGTTTGTGACATGTCTTTCTATGGCACCATTCAAGAGATTTGGGAAGTCAACTACAATACGTTTAAGGTTGTTCTTTCCAAATGCAATTGGGTTGAAAATAATGCTGGTGTTCAGAAGGACGATCATAATTACACACTGGTGGACCTTAGCCGAATTGGCCACTCTTCATATTCGTTCATTATTGCCACACACGGAAGACAAGTATTCTATGTCCCAGATCTTGTTGATGCAAGATGATCCGTTGTTGTGATGCCACCCGCGAAGAACTTTCCCTACAAATGTGTTGATGATGACGTAGGCGACATGTTATCTCATTATCCCCCACTCTCTTCTTACCACACAACATGTGATATTGACGAATGTGGTGAAACATATGCTAGACCTGACTGTGAAGGCATATGGGTTAGCAATTGACTTTGATAAGTATGTATAGTAAGATGCATACACTTTGTTATTTGCGTGTGTCATTCAATGTTCATTACATAGAGTTAATCAATGTCTTTTTTTCTTCTTTGTAGGACAATTCCATTTTCATATATGACTACTTCATAATCTACCGTTATCAAGTTTTCTTTTCATGTTCAACAGTTTCTTTGTTTTCAAATTTCGGAGAATTTTATGTAGTAGATATTCTAATTTGAAAGTGTTATGTGCGTTACCATATTTAGTGTGAACTTTGCGTAATTAAGTGTGTATGAATCGTTTCCTATTTTTTTTTAGAACCAAGTGTTTATTAACGTTTAATTATGAAAGTCATGTATCGGTTCTAATATTAGACTTTTCGGTTATGTTAACACTTTTTTGGTTATTTCACAATTCACATTTACAATTAATTGTTATGTAAGTGTTATAAAATATTAAATGAGTATTGTTACTAACAGTCTGTTGGGTTATGTTTTAAACCACATGTATGTTTGCAGTAATGGTTCATTCAGATGATGATCAGGTTGTTACACCCCTTGAAAGAGGGGAAACTAGTAGCCAGAAAAAGAAACGTGGCCCTACGGGAATGAAAGATATAACACGTTGTAGTAGTGAGGGGCGGAGAATGGTTATTTAGTACAACGAACTAGGTCAACCTATTGGACCAAATGCAACAAAATTGAAGAGTTTTATTGGAACGACCGTAAGGTTTCACGTTCCTATCACGTACTCTACTTGGCATGCCGTTCCAAAAGAGATGAAGGAGAAAATCAATGAACTAATTGAGGTAAAAATCATTCTAATTGAGTGTACGTATATTAAACCACTAACTTCAACATATTTAATACTTTTGATGTGTTTTTCACATTGTAGGCCGACTTCATTCTTGACCCTAAGTCGAAGAAAAGTATACTTCAAAATGCGAGAGTATGCTTTCGTGGATTCAAGTCGAGATTAATAACTACGTACGTACTGCCATTGAAGGACGATGTGGAGAAATTAAAACACCCACCAACGGAGTATTCATTCATCGATCAAGACCATGGAATGAATTTGTGGCTTCACAATTGAAGGAAGATTTTGAAGTAAGTATGAAGATCCGAACATTTTGCTATACTTTATGTACAATTTGTTACCCAAATATGTTAATTTAATTGAGGTTATACAATTTTTTCTACAGATAAAAAGTGAAGGTAAACTGAAAAGGAAGCTATACAAATACAACCATAGAACATCTCACAAAGGGTATGCAAATCTTGTTGAGGAGTTGGTAAGTAACGATTTTGTGATCTAACAAAAATGTTGTTTCCCATTATTTGTGATCTTAATTAAACCCTAATTTTGTCTCTTCAAGAATTTAAGAATGGTATAGAAATTAGTGATTAAACCATAGGGAATTACAACTAATTAAATATGTGCTTTGTTTTCATGATGTCTTAGGAAAGTGGTCCAGTGGTCCAAAACAGTAGAGAAGAGAATAGGAAAGTTTTAGGTGCTTTGGCATTGTCACTGCCCTTAAATATTTGCTTTGTTTTCATGATGTGAGATTTCAAATTTGAACAGAAATTAAAGTTGGTGTTGCTTTATCTTTTCTTCAACATGATCAACTTCAATAACTTCCTTTTCTGTTACATGAAAAGGGTTAAACATAAGGAATCACTTCTATTTTTTTTGCCTAATTAGAATCTCAGACTTACAAAATAGAAGTTACGACCCCATTTTTTAAGTAAGGAAAAGCACAGAAGGGATGGAAGGACTCATATATGCTTAATACAATGCACTGAAGTTGTTCAGTTGTTCTGTTGTGTGGTGTATTCTAATCTAAAGAATTACAAATTGATTATAGTTATATGTGTTACCAACTCCTATGTGTCTTGTTATTGTTTCTCTAAATGTTTATTACTATTATATGTACACGTTCTAGGCTTGCTATGTATTTAATGTACGTATATGTTATCTATTTATACTTATATAACATCTATTCTTTATGTAGCGTGCGTCTTCTTCGTCCAATTAAATAGATCGATCGATAGTATGGAAACATACGCTCTTGGATCGTAAGGGAGAGGTTCCAGATAAAGAGACGAAGGACGTTGCCAATGTTATCGTAAGTTAACACGTTGACAAAATTTGGCAACTTATAATTTCCATTTTTTTGTTACCATGGTTTCGCAACTTATAATTTCCATTTCGTGTACTATGTTAGGACTATCTATTGGGCAACCAGAAGGCACGTAGTTTATCTGGCGGTGACGATGTTCTCACCCAAGCATTGGAAGGGAAAGATCTTCCGGGGCATACTTCGAGGCGTGGCGAAGTACGTGACTAAGAAAAAATATTTCCATACCCCGATGGAATCAAAATCTAAAGAAAGTAACGAGGAGAAGACAGTGTATGAGGAGCGTGATGAAATGGCCAAAATAATTAAGGAGTTAGAAGCGGAGTTACAAAGAATGAAAAAAGATGAGGGTGTGAAAGGAGATGAAGAAGAACAACAACCTAGTATGTGTTCAAAAGGAACACCATCAATCGAAGGGGATTCAGAAGATGAGACTGAAGACGTAGCCTCTGATTCAGTACTAGAGAAAGCGGCAGACGTTGTGACAGAA

mRNA sequence

ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTATCAGTAGATTGACTATCTATTGGGCAACCAGAAGGCACGTAGTTTATCTGGCGGTGACGATGTTCTCACCCAAGCATTGGAAGGGAAAGATCTTCCGGGGCATACTTCGAGGCGTGGCGAAGTACGTGACTAAGAAAAAATATTTCCATACCCCGATGGAATCAAAATCTAAAGAAAGTAACGAGGAGAAGACAGTGTATGAGGAGCGTGATGAAATGGCCAAAATAATTAAGGAGTTAGAAGCGGAGTTACAAAGAATGAAAAAAGATGAGGGTGTGAAAGGAGATGAAGAAGAACAACAACCTAGTATGTGTTCAAAAGGAACACCATCAATCGAAGGGGATTCAGAAGATGAGACTGAAGACGTAGCCTCTGATTCAGTACTAGAGAAAGCGGCAGACGTTGTGACAGAA

Coding sequence (CDS)

ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTATCAGTAGATTGACTATCTATTGGGCAACCAGAAGGCACGTAGTTTATCTGGCGGTGACGATGTTCTCACCCAAGCATTGGAAGGGAAAGATCTTCCGGGGCATACTTCGAGGCGTGGCGAAGTACGTGACTAAGAAAAAATATTTCCATACCCCGATGGAATCAAAATCTAAAGAAAGTAACGAGGAGAAGACAGTGTATGAGGAGCGTGATGAAATGGCCAAAATAATTAAGGAGTTAGAAGCGGAGTTACAAAGAATGAAAAAAGATGAGGGTGTGAAAGGAGATGAAGAAGAACAACAACCTAGTATGTGTTCAAAAGGAACACCATCAATCGAAGGGGATTCAGAAGATGAGACTGAAGACGTAGCCTCTGATTCAGTACTAGAGAAAGCGGCAGACGTTGTGACAGAA

Protein sequence

MEKKCHTWDTGSICQDIIHTDYQ*IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYPDGIKI*RK*RGEDSV*GA**NGQNN*GVRSGVTKNEKR*GCERR*RRTTT*YVFKRNTINRRGFRR*D*RRSL*FSTRESGRRCDRX
Homology
[Close]
BLAST of Chy5G099100.1 vs. ExPASy TrEMBL
Match: A0A0A0KLH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G083810 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 25  IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYPDGIKI 79
           ID +L NQK R+LSGGDDV   ++  K    ++SR GEV   EK+FPYPDGIKI
Sbjct: 93  IDDVLDNQKIRNLSGGDDVPNPSIGWKRSLRNSSRCGEVCHKEKLFPYPDGIKI 146

[Close]
BLAST of Chy5G099100.1 vs. NCBI nr
Match: KAE8650634.1 (hypothetical protein Csa_009788 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.00e-22
Identity = 50/77 (64.94%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 1  MEKKCHTWDTGSICQDIIHTDYQ*I----DYLLGNQKARSLSGGDDVLTQALEGKDLPGH 60
          MEKKCHTWDTGSICQDIIHTDY  I    D L+GNQK RSLSG DDV TQAL GKD PG 
Sbjct: 1  MEKKCHTWDTGSICQDIIHTDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGI 60

Query: 61 TSRRGEVRD*EKIFPYP 73
              G+    +K F  P
Sbjct: 61 LRGVGKYVTKKKYFYTP 77

[Close]
BLAST of Chy5G099100.1 vs. NCBI nr
Match: KGN49719.1 (hypothetical protein Csa_018509 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.06e-08
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 25  IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYPDGIKI 78
           ID +L NQK R+LSGGDDV   ++  K    ++SR GEV   EK+FPYPDGIKI
Sbjct: 93  IDDVLDNQKIRNLSGGDDVPNPSIGWKRSLRNSSRCGEVCHKEKLFPYPDGIKI 146

[Close]
BLAST of Chy5G099100.1 vs. NCBI nr
Match: XP_011653328.1 (uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.81e-07
Identity = 33/49 (67.35%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 25  IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYP 73
           ID LLGNQK RSL G DDVL QAL  KD  G T RRGEVRD EK    P
Sbjct: 170 IDNLLGNQKTRSLYGSDDVLNQALGVKDRLGITLRRGEVRDYEKNIFIP 218

[Close]
BLAST of Chy5G099100.1 vs. NCBI nr
Match: XP_011653325.1 (uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP_011653326.1 uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP_011653327.1 uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >KAE8649268.1 hypothetical protein Csa_014577 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.73e-07
Identity = 33/49 (67.35%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 25  IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYP 73
           ID LLGNQK RSL G DDVL QAL  KD  G T RRGEVRD EK    P
Sbjct: 207 IDNLLGNQKTRSLYGSDDVLNQALGVKDRLGITLRRGEVRDYEKNIFIP 255

[Close]
BLAST of Chy5G099100.1 vs. NCBI nr
Match: XP_031745071.1 (uncharacterized protein LOC116405249 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 3.38e-06
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 25  IDYLLGNQKARSLSGGDDVLTQALEGKDLPGHTSRRGEVRD*EKIFPYP 73
           ID L+GNQK RSLSGGDDVLTQAL GKD PG     G+    +K F  P
Sbjct: 236 IDDLMGNQKGRSLSGGDDVLTQALGGKDRPGILRGVGKYVTKKKYFHTP 284

The following BLAST results are available for this feature:
BLAST of Chy5G099100.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G099100.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLH73.4e-0657.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G083810 PE=4 SV=1[more]
BLAST of Chy5G099100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650634.13.00e-2264.94hypothetical protein Csa_009788 [Cucumis sativus][more]
KGN49719.12.06e-0857.41hypothetical protein Csa_018509 [Cucumis sativus][more]
XP_011653328.12.81e-0767.35uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus][more]
XP_011653325.13.73e-0767.35uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP_011653326.... [more]
XP_031745071.13.38e-0661.22uncharacterized protein LOC116405249 [Cucumis sativus][more]
BLAST of Chy5G099100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..106

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy5G099100Chy5G099100gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G099100.1.exon1Chy5G099100.1.exon1exon
Chy5G099100.1.exon2Chy5G099100.1.exon2exon
Chy5G099100.1.exon3Chy5G099100.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G099100.1.cds1Chy5G099100.1.cds1CDS
Chy5G099100.1.cds2Chy5G099100.1.cds2CDS
Chy5G099100.1.cds3Chy5G099100.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy5G099100.1Chy5G099100.1-proteinpolypeptide