Chy4G087940.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy4G087940.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 26221831 .. 26223988 (+)
Sequence length1215
RNA-Seq ExpressionChy4G087940.1
SyntenyChy4G087940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGTAACCCCTCCTCTCTCCCCCACCACTGGAATCCATGAGTACTATTTTACTCGACTTTGGCCAACTTAAAAGTCGACATGAATAACAAGCCCAATGATTTTCAATATTAATAATGAATTAATGATGAACATATATGACCTCGTGTTTGCAAACTCTAATACTATGTTAATGTTAAGCTTGAAAATTTAGAATACTCAACAAGTGAAAATCGATATTAATGGTTAGAATAACAATGTATAAGTTGTTGTTTGCACACTTATGGCCTATTAAACCACTGTTTTTGCTTTTGCTTTGTTTAAAAGTAAATTTAATATTATATCTATATAAATATTTATGTATGGTCTTAACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGGTTCAATAATAGAATCAAACTTTTGAAAATTAATGGTCATATTTAAGCTTTTGGGAAACCCAATGAGTTACATATATAATATATGTATATATAATTGATGGGTATTGATAAGAATTCTTGTGTGTGTAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGTTTAAATTGATTCACCTAGAAACTTTATATTTTCATTTTTAAATTTTAGTCCTTATGTTCTTGAACCAAACTTTAAATCTAATCCTTCAAAATTTATAGTAAAGATGTTGAAATTAAAACCGAATAATAATTTAAAAGGGGAACAAAAATTTTAAATGGAACTAAAATGATATTTTATTTATTTATTATTTAAGTTTGTATTTGAATATAAATAAAAAGAGAAAACGAAAGGAAAATTATAGAGTGTTGTAAGACAAGCGAATAATGAATGAATGAGAAAAAGCCAATAAGCAAGTGGAGTTCATAAGAATGTGAAGATTCCCAATGTCAATTTAAATTTTGTCACATTATGATGAAGTGCAATTTTTCCTTTGCTTCTAAAAATGGGTCACACTATTTTCAAATTAATACTAAACTATAGGAAATATTTTCAAAGTAAAATATGAAGAAAAATTAAATGAAGGGTAAATATATTTTTTTTTTAT

mRNA sequence

GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGGTAAATATATTTTTTTTTTAT

Coding sequence (CDS)

GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGGTAAATATATTTTTTTTTTAT

Protein sequence

EKKN*RYGLMFTCNHILQYIPPKGIHFHSNLFFLFFFLWLSLIPYSNFISTTTLSSSMVSYIPNFPSLFSPFLPHSYFLFPYPSNGYEHKQYLMFSFSHGSPLVPPNHSLQLRSIIHFPFSQSS*LNIFFSFHKLPPFFPIITSNGSNNSPLLLVVVLPQHLPRLTGRL***GRLQTRCKDRVK*RSESQQSQIFSGKKIEQIYKLQKLGGVGA*RSERVYGFRV*I*ERKFEPSNGEFGSWFAKAQNSNKQTKS*RRRRW*R*PRQRK*****N*EERDSKTISFRGMDNKKTKFSSFRSKNA*GFFNL*HEETPQILG*NCCF*NSIKIF*LNYLNFFYFNLIETIFFYINNMNSKHIIIETSQP*SLVRMLLAHFS*IKPLK*IFDSSILIP*IMVNIFFFY
Homology
[Close]
BLAST of Chy4G087940.1 vs. NCBI nr
Match: XP_038903412.1 (uncharacterized protein LOC120090009 isoform X2 [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 6.50e-13
Identity = 53/81 (65.43%), Postives = 58/81 (71.60%), Query Frame = 0 

Query: 94  MFSFSHGSPLVPPNHSLQLRSIIHFPFSQSS*LNIFFSFHKLP--PFF---PIITSNGSN 153
           M SF+HGSPLVPPNHSL +RSI  FP+SQ S  +I FSFHKLP  PF    PI+TSNGS 
Sbjct: 1   MSSFNHGSPLVPPNHSL-VRSI-EFPYSQFS-QHIIFSFHKLPFFPFSLPSPILTSNGSI 60

Query: 154 NSPLLLVV---VLPQHLPRLT 166
           NS LL  V    L QHLPRLT
Sbjct: 61  NSSLLFAVPFGFLRQHLPRLT 78

The following BLAST results are available for this feature:
BLAST of Chy4G087940.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G087940.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G087940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903412.16.50e-1365.43uncharacterized protein LOC120090009 isoform X2 [Benincasa hispida][more]
BLAST of Chy4G087940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..263

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy4G087940Chy4G087940gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G087940.1.exon1Chy4G087940.1.exon1exon
Chy4G087940.1.exon2Chy4G087940.1.exon2exon
Chy4G087940.1.exon3Chy4G087940.1.exon3exon
Chy4G087940.1.exon4Chy4G087940.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G087940.1.cds1Chy4G087940.1.cds1CDS
Chy4G087940.1.cds2Chy4G087940.1.cds2CDS
Chy4G087940.1.cds3Chy4G087940.1.cds3CDS
Chy4G087940.1.cds4Chy4G087940.1.cds4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy4G087940.1Chy4G087940.1-proteinpolypeptide