Chy4G087940 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G087940
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 26221831 .. 26223988 (+)
RNA-Seq Expression	Chy4G087940
Synteny	Chy4G087940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGTAACCCCTCCTCTCTCCCCCACCACTGGAATCCATGAGTACTATTTTACTCGACTTTGGCCAACTTAAAAGTCGACATGAATAACAAGCCCAATGATTTTCAATATTAATAATGAATTAATGATGAACATATATGACCTCGTGTTTGCAAACTCTAATACTATGTTAATGTTAAGCTTGAAAATTTAGAATACTCAACAAGTGAAAATCGATATTAATGGTTAGAATAACAATGTATAAGTTGTTGTTTGCACACTTATGGCCTATTAAACCACTGTTTTTGCTTTTGCTTTGTTTAAAAGTAAATTTAATATTATATCTATATAAATATTTATGTATGGTCTTAACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGGTTCAATAATAGAATCAAACTTTTGAAAATTAATGGTCATATTTAAGCTTTTGGGAAACCCAATGAGTTACATATATAATATATGTATATATAATTGATGGGTATTGATAAGAATTCTTGTGTGTGTAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGTTTAAATTGATTCACCTAGAAACTTTATATTTTCATTTTTAAATTTTAGTCCTTATGTTCTTGAACCAAACTTTAAATCTAATCCTTCAAAATTTATAGTAAAGATGTTGAAATTAAAACCGAATAATAATTTAAAAGGGGAACAAAAATTTTAAATGGAACTAAAATGATATTTTATTTATTTATTATTTAAGTTTGTATTTGAATATAAATAAAAAGAGAAAACGAAAGGAAAATTATAGAGTGTTGTAAGACAAGCGAATAATGAATGAATGAGAAAAAGCCAATAAGCAAGTGGAGTTCATAAGAATGTGAAGATTCCCAATGTCAATTTAAATTTTGTCACATTATGATGAAGTGCAATTTTTCCTTTGCTTCTAAAAATGGGTCACACTATTTTCAAATTAATACTAAACTATAGGAAATATTTTCAAAGTAAAATATGAAGAAAAATTAAATGAAGGGTAAATATATTTTTTTTTTAT

mRNA sequence

GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGGTAAATATATTTTTTTTTTAT

Coding sequence (CDS)

GAAAAAAAAAACTAAAGATATGGATTAATGTTCACTTGTAACCACATCCTCCAATATATTCCTCCAAAGGGAATTCACTTCCACTCAAACTTATTCTTCCTTTTTTTTTTTCTTTGGCTTTCACTCATTCCATATTCTAATTTCATTTCCACCACAACTCTCTCCTCTTCCATGGTTTCTTATATCCCAAACTTTCCTTCTCTTTTTTCTCCCTTTCTTCCACACTCTTATTTTCTTTTTCCCTATCCCTCCAATGGCTATGAACACAAACAATACCTTATGTTTAGTTTCAGCCATGGATCGCCTTTGGTACCACCAAATCATTCTTTGCAGCTCCGATCCATTATTCACTTCCCATTTTCCCAATCTTCTTAACTCAACATCTTCTTTTCCTTTCACAAACTTCCTCCCTTCTTCCCCATTATCACCTCTAATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGGAAGATTATAGTAATGAGGAAGACTACAAACAAGATGCAAAGATAGAGTCAAGTGAAGATCAGAGTCTCAACAGTCTCAAATTTTCAGTGGGAAGAAAATTGAACAAATCTACAAGTTGCAAAAGCTTGGGGGAGTTGGAGCTTGAAGAAGTGAAAGGGTTTATGGATTTAGGGTTTGAATTTAAGAGAGAAAGTTTGAGCCCTCAAATGGTGAATTTGGTTCCTGGTTTGCAAAGGCTCAGAACTCAAATAAACAAACAAAATCTTGAAGAAGACGACGATGGTGACGGTGACCACGACAAAGAAAATGATGATGATGATAAAATTAAGAAGAGAGAGATAGCAAGACCATATCTTTCAGAGGCATGGATAATAAGAAGACCAAATTCTCCTCTTTTAGATCTAAGAATGCCTAAGGTTTCTTCAACCTCTGACATGAAGAAACACCTCAGATCTTGGGCTAAAACTGTTGCTTTTGAAATTCAATAAAAATATTTTGACTTAATTATTTAAACTTTTTTTACTTTAATTTAATTGAAACAATATTTTTTTATATAAACAACATGAATTCCAAACATATAATTATAGAAACAAGCCAGCCTTAATCTCTAGTTCGAATGCTTTTGGCACATTTTTCTTGAATTAAACCATTAAAATGAATATTCGACTCATCCATTCTTATTCCTTGAATTATGGTAAATATATTTTTTTTTTAT

Protein sequence

EKKN*RYGLMFTCNHILQYIPPKGIHFHSNLFFLFFFLWLSLIPYSNFISTTTLSSSMVSYIPNFPSLFSPFLPHSYFLFPYPSNGYEHKQYLMFSFSHGSPLVPPNHSLQLRSIIHFPFSQSS*LNIFFSFHKLPPFFPIITSNGSNNSPLLLVVVLPQHLPRLTGRL***GRLQTRCKDRVK*RSESQQSQIFSGKKIEQIYKLQKLGGVGA*RSERVYGFRV*I*ERKFEPSNGEFGSWFAKAQNSNKQTKS*RRRRW*R*PRQRK*****N*EERDSKTISFRGMDNKKTKFSSFRSKNA*GFFNL*HEETPQILG*NCCF*NSIKIF*LNYLNFFYFNLIETIFFYINNMNSKHIIIETSQP*SLVRMLLAHFS*IKPLK*IFDSSILIP*IMVNIFFFY

Homology

[Close]

BLAST of Chy4G087940 vs. NCBI nr
Match: XP_038903412.1 (uncharacterized protein LOC120090009 isoform X2 [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 6.50e-13
Identity = 53/81 (65.43%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 94  MFSFSHGSPLVPPNHSLQLRSIIHFPFSQSS*LNIFFSFHKLP--PFF---PIITSNGSN 153
           M SF+HGSPLVPPNHSL +RSI  FP+SQ S  +I FSFHKLP  PF    PI+TSNGS 
Sbjct: 1   MSSFNHGSPLVPPNHSL-VRSI-EFPYSQFS-QHIIFSFHKLPFFPFSLPSPILTSNGSI 60

Query: 154 NSPLLLVV---VLPQHLPRLT 166
           NS LL  V    L QHLPRLT
Sbjct: 61  NSSLLFAVPFGFLRQHLPRLT 78

The following BLAST results are available for this feature:

BLAST of Chy4G087940 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G087940 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G087940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903412.1	6.50e-13	65.43	uncharacterized protein LOC120090009 isoform X2 [Benincasa hispida]	[more]

BLAST of Chy4G087940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G087940.1	Chy4G087940.1	mRNA