Chy2G046280.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy2G046280.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 27489141 .. 27491349 (-)
Sequence length1590
RNA-Seq ExpressionChy2G046280.1
SyntenyChy2G046280.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTTATCTAAAAAGTTTCATGTATCCAAATTATTTTTCACTCATTTATAATAAATACCACATCTGTGTTCAAGTTACAAAGCTGATCCTCCCTTATATAGCTTCTTCTTCTTGAAAGAAAAAGAAAAAAAAAAGATTATCTTCTTCAATTATGGAGGAAAATCTACCTCCTGGATTCAGATTTCACCCAACTGATGAAGAACTCATTTCTTATTATCTCACTCAAAAACTTTCTGATTCTTCTTTCACTTCTAAAGCAATTGGAGTTGTGGATCTCAACAAGAATGAACCTTGGGATCTTCCAGGTAATTCATATATATTATTCATTATTATTCTTTTACGTTTTTATTGAAGTGTTTGATATAATTAATTAAGTTGTTTATCGTTATTGATCATCAGCTAAAGCTACGATGGGAGAGAAAGAGTGGTACTTTTTCAGCTTACGAGATCGAAAATACCCAACCGGGCTTCGAACCAATCGAGCGACGGAGGCAGGTTATTGGAAGACGACGGGGAAAGACAAGGAAATCTTTGGCAGTGTTGGTCATGCTTTGGTTGGAATGAAAAAAACTCTTGTGTTTTACAAGGGAAGAGCTCCTCGAGGTGAGAAAAGTAATTGGGTTATGCACGAATACCGCCAACAAAGTAGCCATTTTTTCAAACCCTCCAAGGTATGTAACCAAAACCAGCACGTATATATCTGTTTAGTCCTTAGACTTATTTTTCTACTTCATTCTTATATATTTTAGCTAGGGTTGTTTTTATTCCAATGAGCTTACTGGGTAGGTCTTTGTCATTTTAAATTCAATCGAGTTAATCAAATACATATCTTGCAAAACATATGTCCTTAATTACTCAAAATTAGTTTGACAATAATTCTTAATCATGATGTAAGGCAAGATTTGAAAATGGTTAAAAGTGGTTAAGAAAATGTAAAAATCCAACCTAATATAGATTGAAAACATAAAACTAAAAACGAAATCATCTTCAAAACAAAACCTTAAGAATATAATATTGTACTTTGTTTAAAATCAAACCCATAATACAATGCACATTATAAGAAAACGTTGTCTTGAAGATATGGAGAAAGGAAAAAAGAAACAAAAGTTATTGTAAAATCATTTAAAGTTCTTGAAATTTTCAATTATGGTTGTGTTAATTAATTAATTAATCTGTTTTTTTGTTTGTAATTTCAGGAAGAATGGGTAGTTTGCAGGGTATTTCAGAAACAAAATACACCAAAAAAACCACAACAATCATCATCATCTCAACCATCTCTTTCATCTCCTTGTGATACAAATTCAATTGTCAATGAATTTGGAGATCATATTGAATTATCAAACTTCAACAATAATAATATTATTTCATCTCAAACATATGAAAACAACAACATGATCAATAACAACAATAATAATAACATGATGAATATGAATATGAATTTGAATTTGAATAATTGGGTTTCACCAACAAATGAAAGCCTAATTCCTTCACTTTCATGGCCACTTAATTCCAATCTTCTAACTTCTTCGAATAATCTTTCTATGAATTCTCTTCTTCTCAAAGCATTGCAACTTAGAACCTTTCAACAACAAAGGGATAATGTCTTGGCTTCTTCTTCTTCTAATACTTTTAATAATAATATTCATGATCATCATCATCAAGCTGCCAATATTGTTCATTCTCAATTTGGAACAACAAATGACCATTTGAGCTGCTTCCAACCTTCTTCGTCTTCTAAAGTTTTTGAACCTTCATCACAGCAACAACAAGAGGAGCAACCATTGAACTTGGACTCCCTATGGTGAAACTATATGTTGATCTTACGAATCATTAGTTCACTCAATTAATGTTTATGTGAAGAATATGTAATGTGACTAACCCTCTTCTTTGAACTTTTGTAATATGTCATTTTCAATAAGGGAAGTTTTAGGGGAGATCATATGTAATTGTAACTTTGTCAAAATTGGGGTGTATCATTCTGATGTGGAGTTTTAGGGCTTAGTTTTAATTTCTCAAGTCATATTTAGGTAAAATGTTGTATGTTTAATATGATGATGTTGAAGTTCAATGTTTATAAGGATTGTGGGAAAAACCCCAAGTCCTTTGTTTCAAATTATTAAATCATTGTGTTAGGTGGTTATATTCTCATGGTATCATCAACAAATCCTTTTATGTTATCATATTGGAGAATGGAAGGGGATTAAATTC

mRNA sequence

GGTTTTATCTAAAAAGTTTCATGTATCCAAATTATTTTTCACTCATTTATAATAAATACCACATCTGTGTTCAAGTTACAAAGCTGATCCTCCCTTATATAGCTTCTTCTTCTTGAAAGAAAAAGAAAAAAAAAAGATTATCTTCTTCAATTATGGAGGAAAATCTACCTCCTGGATTCAGATTTCACCCAACTGATGAAGAACTCATTTCTTATTATCTCACTCAAAAACTTTCTGATTCTTCTTTCACTTCTAAAGCAATTGGAGTTGTGGATCTCAACAAGAATGAACCTTGGGATCTTCCAGCTAAAGCTACGATGGGAGAGAAAGAGTGGTACTTTTTCAGCTTACGAGATCGAAAATACCCAACCGGGCTTCGAACCAATCGAGCGACGGAGGCAGGTTATTGGAAGACGACGGGGAAAGACAAGGAAATCTTTGGCAGTGTTGGTCATGCTTTGGTTGGAATGAAAAAAACTCTTGTGTTTTACAAGGGAAGAGCTCCTCGAGGTGAGAAAAGTAATTGGGTTATGCACGAATACCGCCAACAAAGTAGCCATTTTTTCAAACCCTCCAAGGAAGAATGGGTAGTTTGCAGGGTATTTCAGAAACAAAATACACCAAAAAAACCACAACAATCATCATCATCTCAACCATCTCTTTCATCTCCTTGTGATACAAATTCAATTGTCAATGAATTTGGAGATCATATTGAATTATCAAACTTCAACAATAATAATATTATTTCATCTCAAACATATGAAAACAACAACATGATCAATAACAACAATAATAATAACATGATGAATATGAATATGAATTTGAATTTGAATAATTGGGTTTCACCAACAAATGAAAGCCTAATTCCTTCACTTTCATGGCCACTTAATTCCAATCTTCTAACTTCTTCGAATAATCTTTCTATGAATTCTCTTCTTCTCAAAGCATTGCAACTTAGAACCTTTCAACAACAAAGGGATAATGTCTTGGCTTCTTCTTCTTCTAATACTTTTAATAATAATATTCATGATCATCATCATCAAGCTGCCAATATTGTTCATTCTCAATTTGGAACAACAAATGACCATTTGAGCTGCTTCCAACCTTCTTCGTCTTCTAAAGTTTTTGAACCTTCATCACAGCAACAACAAGAGGAGCAACCATTGAACTTGGACTCCCTATGGTGAAACTATATGTTGATCTTACGAATCATTAGTTCACTCAATTAATGTTTATGTGAAGAATATGTAATGTGACTAACCCTCTTCTTTGAACTTTTGTAATATGTCATTTTCAATAAGGGAAGTTTTAGGGGAGATCATATGTAATTGTAACTTTGTCAAAATTGGGGTGTATCATTCTGATGTGGAGTTTTAGGGCTTAGTTTTAATTTCTCAAGTCATATTTAGGTAAAATGTTGTATGTTTAATATGATGATGTTGAAGTTCAATGTTTATAAGGATTGTGGGAAAAACCCCAAGTCCTTTGTTTCAAATTATTAAATCATTGTGTTAGGTGGTTATATTCTCATGGTATCATCAACAAATCCTTTTATGTTATCATATTGGAGAATGGAAGGGGATTAAATTC

Coding sequence (CDS)

GGTTTTATCTAAAAAGTTTCATGTATCCAAATTATTTTTCACTCATTTATAATAAATACCACATCTGTGTTCAAGTTACAAAGCTGATCCTCCCTTATATAGCTTCTTCTTCTTGAAAGAAAAAGAAAAAAAAAAGATTATCTTCTTCAATTATGGAGGAAAATCTACCTCCTGGATTCAGATTTCACCCAACTGATGAAGAACTCATTTCTTATTATCTCACTCAAAAACTTTCTGATTCTTCTTTCACTTCTAAAGCAATTGGAGTTGTGGATCTCAACAAGAATGAACCTTGGGATCTTCCAGCTAAAGCTACGATGGGAGAGAAAGAGTGGTACTTTTTCAGCTTACGAGATCGAAAATACCCAACCGGGCTTCGAACCAATCGAGCGACGGAGGCAGGTTATTGGAAGACGACGGGGAAAGACAAGGAAATCTTTGGCAGTGTTGGTCATGCTTTGGTTGGAATGAAAAAAACTCTTGTGTTTTACAAGGGAAGAGCTCCTCGAGGTGAGAAAAGTAATTGGGTTATGCACGAATACCGCCAACAAAGTAGCCATTTTTTCAAACCCTCCAAGGAAGAATGGGTAGTTTGCAGGGTATTTCAGAAACAAAATACACCAAAAAAACCACAACAATCATCATCATCTCAACCATCTCTTTCATCTCCTTGTGATACAAATTCAATTGTCAATGAATTTGGAGATCATATTGAATTATCAAACTTCAACAATAATAATATTATTTCATCTCAAACATATGAAAACAACAACATGATCAATAACAACAATAATAATAACATGATGAATATGAATATGAATTTGAATTTGAATAATTGGGTTTCACCAACAAATGAAAGCCTAATTCCTTCACTTTCATGGCCACTTAATTCCAATCTTCTAACTTCTTCGAATAATCTTTCTATGAATTCTCTTCTTCTCAAAGCATTGCAACTTAGAACCTTTCAACAACAAAGGGATAATGTCTTGGCTTCTTCTTCTTCTAATACTTTTAATAATAATATTCATGATCATCATCATCAAGCTGCCAATATTGTTCATTCTCAATTTGGAACAACAAATGACCATTTGAGCTGCTTCCAACCTTCTTCGTCTTCTAAAGTTTTTGAACCTTCATCACAGCAACAACAAGAGGAGCAACCATTGAACTTGGACTCCCTATGGTGAAACTATATGTTGATCTTACGAATCATTAGTTCACTCAATTAATGTTTATGTGAAGAATATGTAATGTGACTAACCCTCTTCTTTGAACTTTTGTAATATGTCATTTTCAATAAGGGAAGTTTTAGGGGAGATCATATGTAATTGTAACTTTGTCAAAATTGGGGTGTATCATTCTGATGTGGAGTTTTAGGGCTTAGTTTTAATTTCTCAAGTCATATTTAGGTAAAATGTTGTATGTTTAATATGATGATGTTGAAGTTCAATGTTTATAAGGATTGTGGGAAAAACCCCAAGTCCTTTGTTTCAAATTATTAAATCATTGTGTTAGGTGGTTATATTCTCATGGTATCATCAACAAATCCTTTTATGTTATCATATTGGAGAATGGAAGGGGATTAAATTC

Protein sequence

GFI*KVSCIQIIFHSFIINTTSVFKLQS*SSLI*LLLLERKRKKKDYLLQLWRKIYLLDSDFTQLMKNSFLIISLKNFLILLSLLKQLELWISTRMNLGIFQLKLRWERKSGTFSAYEIENTQPGFEPIERRRQVIGRRRGKTRKSLAVLVMLWLE*KKLLCFTREELLEVRKVIGLCTNTANKVAIFSNPPRKNG*FAGYFRNKIHQKNHNNHHHLNHLFHLLVIQIQLSMNLEIILNYQTSTIIILFHLKHMKTTT*SITTIIIT**I*I*I*I*IIGFHQQMKA*FLHFHGHLIPIF*LLRIIFL*ILFFSKHCNLEPFNNKGIMSWLLLLLILLIIIFMIIIIKLPILFILNLEQQMTI*AASNLLRLLKFLNLHHSNNKRSNH*TWTPYGETIC*SYESLVHSINVYVKNM*CD*PSSLNFCNMSFSIREVLGEIICNCNFVKIGVYHSDVEF*GLVLISQVIFR*NVVCLI**C*SSMFIRIVGKTPSPLFQIIKSLC*VVIFSWYHQQILLCYHIGEWKGIKF
Homology
[Close]
BLAST of Chy2G046280.1 vs. ExPASy TrEMBL
Match: A0A2P2QVG9 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-07
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 90  LWISTRMNLGIFQLKLRWERKSGTFSAYEIENTQPGFEPIERRRQVIGRRRGKTR 145
           +WIST +  GI+QL+ R ERKSGTFS  EIE+T+ G +PIE+ R+ IGRRR +TR
Sbjct: 1   MWISTSVIHGIYQLRPRLERKSGTFSVPEIESTRMGLDPIEQPRRGIGRRRAQTR 55

The following BLAST results are available for this feature:
BLAST of Chy2G046280.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G046280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2QVG94.6e-0760.00Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of Chy2G046280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Chy2G046280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy2G046280Chy2G046280gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G046280.1.exon3Chy2G046280.1.exon3exon
Chy2G046280.1.exon2Chy2G046280.1.exon2exon
Chy2G046280.1.exon1Chy2G046280.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G046280.1.cds3Chy2G046280.1.cds3CDS
Chy2G046280.1.cds2Chy2G046280.1.cds2CDS
Chy2G046280.1.cds1Chy2G046280.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy2G046280.1Chy2G046280.1-proteinpolypeptide