Chy2G040580.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy2G040580.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 19573285 .. 19573509 (-)
Sequence length225
RNA-Seq ExpressionChy2G040580.1
SyntenyChy2G040580.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACAAACATAGACTATGATTTTTATATCACGAAACTTCACAAACATGAAGATTATGTTCTGATAGAGGGAGAACATGTTGACTTCAACGCCAGAGAAATCAACGTATTGTATGATTTGCATAATGATGCAAAAGCAGAAGGAAATAAAATTATTGAAGAGCCTACTGAAATAGAGATTAATGACGTATTGACTTTAGAGGCGCAACTAGGCGTTGAATGA

mRNA sequence

ATGAGGACAAACATAGACTATGATTTTTATATCACGAAACTTCACAAACATGAAGATTATGTTCTGATAGAGGGAGAACATGTTGACTTCAACGCCAGAGAAATCAACGTATTGTATGATTTGCATAATGATGCAAAAGCAGAAGGAAATAAAATTATTGAAGAGCCTACTGAAATAGAGATTAATGACGTATTGACTTTAGAGGCGCAACTAGGCGTTGAATGA

Coding sequence (CDS)

ATGAGGACAAACATAGACTATGATTTTTATATCACGAAACTTCACAAACATGAAGATTATGTTCTGATAGAGGGAGAACATGTTGACTTCAACGCCAGAGAAATCAACGTATTGTATGATTTGCATAATGATGCAAAAGCAGAAGGAAATAAAATTATTGAAGAGCCTACTGAAATAGAGATTAATGACGTATTGACTTTAGAGGCGCAACTAGGCGTTGAATGA

Protein sequence

MRTNIDYDFYITKLHKHEDYVLIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTLEAQLGVE*
Homology
BLAST of Chy2G040580.1 vs. ExPASy TrEMBL
Match: A0A0A0KPJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G044000 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.1e-06
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 22  LIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTLEAQL 72
           L +GE VDFNARE N LYDLHND  A+GN+ I  PT  + NDVL +  +L
Sbjct: 83  LFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTTKFNDVLIVVVEL 132

BLAST of Chy2G040580.1 vs. NCBI nr
Match: KAE8648203.1 (hypothetical protein Csa_018377 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 9.41e-09
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 24 EGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTLEAQL 71
          +GE VDFNARE N LYDLHND  A+GN+ I  PT  + NDVL +  +L
Sbjct: 52 DGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTTKFNDVLIVVVEL 99

BLAST of Chy2G040580.1 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 6.42e-08
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 8   DFYITKLHKHEDYVLIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTL 67
           DFY  +LH   D V ++ E V F+AR+IN +Y + ++  A GNKII++PTE ++ D L +
Sbjct: 279 DFYRGRLHGTRDAVTLKRETVSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQV 338

Query: 68  EAQLGV 73
             QLG+
Sbjct: 339 LMQLGM 344

BLAST of Chy2G040580.1 vs. NCBI nr
Match: WP_217833181.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 56.2 bits (134), Expect = 1.17e-07
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 9   FYITKLHKHEDYVLIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTLE 68
           FY   +HK    V +E E + F  +EIN L+DL N A AEGN+I+  PT+ E+ND LT+ 
Sbjct: 64  FYEGTIHK-AHLVKVEDEVISFEPQEINALFDLPNIAVAEGNRIMSTPTDAEMNDALTII 123

Query: 69  AQLGVE 74
           A+ G E
Sbjct: 124 AKPGSE 128

BLAST of Chy2G040580.1 vs. NCBI nr
Match: XP_038904284.1 (stress response protein NST1-like [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 1.54e-07
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 3   TNIDYDFYITKLHKHEDYVLIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEIN 62
           T +  DFY  +LH  +D V I+G+ V F+AR+IN LY + ++  A GNKII++PTE ++ 
Sbjct: 150 TQVVRDFYHGRLHGTKDVVTIKGQVVPFSARDINELYQMKDNPDALGNKIIDDPTEEQLE 209

Query: 63  DVLTLEAQL 71
           D  + E  L
Sbjct: 210 DSASREMDL 218

BLAST of Chy2G040580.1 vs. NCBI nr
Match: XP_038902322.1 (protein PXR1-like [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.83e-07
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 8   DFYITKLHKHEDYVLIEGEHVDFNAREINVLYDLHNDAKAEGNKIIEEPTEIEINDVLTL 67
           DFY  +LH++ D V  +GE V F+A++IN LY + ++  A GNKI+E+PTE  + D L +
Sbjct: 110 DFYRGRLHENRDAVTFKGETVHFSAKDINELYQMKDNLDAPGNKIVEDPTEELMADALRV 169

Query: 68  EAQ 70
             Q
Sbjct: 170 LTQ 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPJ86.1e-0658.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G044000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8648203.19.41e-0958.33hypothetical protein Csa_018377 [Cucumis sativus][more]
XP_038876674.16.42e-0843.94chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
WP_217833181.11.17e-0746.97hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
XP_038904284.11.54e-0743.48stress response protein NST1-like [Benincasa hispida][more]
XP_038902322.11.83e-0744.44protein PXR1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy2G040580Chy2G040580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G040580.1.exon1Chy2G040580.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G040580.1.cds1Chy2G040580.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy2G040580.1Chy2G040580.1-proteinpolypeptide