Chy1G011490.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy1G011490.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA ligase 1
LocationchrH01: 13434892 .. 13435388 (-)
Sequence length291
RNA-Seq ExpressionChy1G011490.1
SyntenyChy1G011490.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGGACGAACTGACTCGGAATCTTCCGTTGTCTGAGGATTATTCGAGTTCCGAAGATGACGACGACGATAGCTTGATTGAAATTCCTCTTCTTCCAAATTCGAATGGGATTCGGAATCTTGAAACGTGTTTGCCTAATTTGTTACCAGATTCTGTTTTGAGACAGCATGGATTTGTTGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAAATCGATATTTCCAAAGGTTTCAACCGATTTCCAACTGTTTGCAATTGAAAGGGGATGGATCTCAGTCAGGTACAAAATCTGATCAGAAGTTGAATCGGTAATGCGTTGGGTTAAGCAATTAATTTGTAATTTGATGATATTTTTGTTCATTCTTTTCCTTTTCCTTTTTCTTTTTCAACTGTTTTAGTTCTTAATTTGATTCTCTCATGAATACTTTATTAGAGCTTTTTTATCCGTACACAAAATTACCTCTGCCATTTGCTCTTCCTTAA

mRNA sequence

ATGCATTTGGACGAACTGACTCGGAATCTTCCGTTGTCTGAGGATTATTCGAGTTCCGAAGATGACGACGACGATAGCTTGATTGAAATTCCTCTTCTTCCAAATTCGAATGGGATTCGGAATCTTGAAACGTGTTTGCCTAATTTGTTACCAGATTCTGTTTTGAGACAGCATGGATTTGTTGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAAATCGATATTTCCAAAGAGCTTTTTTATCCGTACACAAAATTACCTCTGCCATTTGCTCTTCCTTAA

Coding sequence (CDS)

ATGCATTTGGACGAACTGACTCGGAATCTTCCGTTGTCTGAGGATTATTCGAGTTCCGAAGATGACGACGACGATAGCTTGATTGAAATTCCTCTTCTTCCAAATTCGAATGGGATTCGGAATCTTGAAACGTGTTTGCCTAATTTGTTACCAGATTCTGTTTTGAGACAGCATGGATTTGTTGAGCTTTTGGAAGAGATCAATGAGGAAGATAACTTGATTGAAATCGATATTTCCAAAGAGCTTTTTTATCCGTACACAAAATTACCTCTGCCATTTGCTCTTCCTTAA

Protein sequence

MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGFVELLEEINEEDNLIEIDISKELFYPYTKLPLPFALP*
Homology
BLAST of Chy1G011490.1 vs. ExPASy TrEMBL
Match: A0A5D3C7W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00700 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 60
           MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF
Sbjct: 126 MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 185

Query: 61  VELLEEINEEDNLIEIDISK 81
           VELLEEINEEDNLIEIDISK
Sbjct: 186 VELLEEINEEDNLIEIDISK 205

BLAST of Chy1G011490.1 vs. ExPASy TrEMBL
Match: A0A0A0K6W9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G101780 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 60
           MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF
Sbjct: 122 MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 181

Query: 61  VELLEEINEEDNLIEIDISK 81
           VELLEEINEEDNLIEIDISK
Sbjct: 182 VELLEEINEEDNLIEIDISK 201

BLAST of Chy1G011490.1 vs. ExPASy TrEMBL
Match: A0A6J1J2I9 (uncharacterized protein LOC111480668 OS=Cucurbita maxima OX=3661 GN=LOC111480668 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.6e-22
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGI---------RNLETCLPNLLP 60
           M LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ I         RNLETCLP+LLP
Sbjct: 136 MCLDELARNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRALVRNLETCLPDLLP 195

Query: 61  DSVLRQHGFVELLEEINEEDNLIEIDISK 81
           DSVL+Q+GFVELLEEINEEDNLIEIDIS+
Sbjct: 196 DSVLKQNGFVELLEEINEEDNLIEIDISR 221

BLAST of Chy1G011490.1 vs. ExPASy TrEMBL
Match: A0A6J1FNF5 (uncharacterized protein LOC111446758 OS=Cucurbita moschata OX=3662 GN=LOC111446758 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGI---------RNLETCLPNLLP 60
           M LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ I         RNLETCLP+LLP
Sbjct: 141 MCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLP 200

Query: 61  DSVLRQHGFVELLEEINEEDNLIEIDISK 81
           DSVL+Q+GFVELLEEINEEDNLIEIDIS+
Sbjct: 201 DSVLKQNGFVELLEEINEEDNLIEIDISR 226

BLAST of Chy1G011490.1 vs. ExPASy TrEMBL
Match: A0A7J9BC29 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_017812 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 8   RNLPLSEDYSSSEDDDDDSLIEIPLLPN-SNGIR-----NLETCLPNLLPDSVLRQHGFV 67
           RN  +S++YS+SE+DD++ LIEI +  N + G+      NL++ LP LLP+ +  Q   V
Sbjct: 132 RNREISDEYSTSEEDDEEGLIEIAIPSNDTTGLNEEPKPNLQSNLPTLLPEPIFHQQDLV 191

Query: 68  ELLEEINEEDNLIEIDIS 80
           ELLEEINEE+NLIEIDIS
Sbjct: 192 ELLEEINEEENLIEIDIS 209

BLAST of Chy1G011490.1 vs. NCBI nr
Match: KGN44012.1 (hypothetical protein Csa_018206 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 9.97e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 60
           MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF
Sbjct: 122 MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 181

Query: 61  VELLEEINEEDNLIEIDISK 80
           VELLEEINEEDNLIEIDISK
Sbjct: 182 VELLEEINEEDNLIEIDISK 201

BLAST of Chy1G011490.1 vs. NCBI nr
Match: TYK07951.1 (hypothetical protein E5676_scaffold265G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 1.12e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 60
           MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF
Sbjct: 126 MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIRNLETCLPNLLPDSVLRQHGF 185

Query: 61  VELLEEINEEDNLIEIDISK 80
           VELLEEINEEDNLIEIDISK
Sbjct: 186 VELLEEINEEDNLIEIDISK 205

BLAST of Chy1G011490.1 vs. NCBI nr
Match: XP_022981598.1 (uncharacterized protein LOC111480668 [Cucurbita maxima] >XP_022981599.1 uncharacterized protein LOC111480668 [Cucurbita maxima])

HSP 1 Score: 114 bits (286), Expect = 3.22e-29
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIR---------NLETCLPNLLP 60
           M LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ IR         NLETCLP+LLP
Sbjct: 136 MCLDELARNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRALVRNLETCLPDLLP 195

Query: 61  DSVLRQHGFVELLEEINEEDNLIEIDISK 80
           DSVL+Q+GFVELLEEINEEDNLIEIDIS+
Sbjct: 196 DSVLKQNGFVELLEEINEEDNLIEIDISR 221

BLAST of Chy1G011490.1 vs. NCBI nr
Match: KAG6607751.1 (hypothetical protein SDJN03_01093, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (286), Expect = 3.81e-29
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIR---------NLETCLPNLLP 60
           M LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ IR         NLETCLP+LLP
Sbjct: 143 MCLDELARNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLP 202

Query: 61  DSVLRQHGFVELLEEINEEDNLIEIDISK 80
           DSVL+Q+GFVELLEEINEEDNLIEIDIS+
Sbjct: 203 DSVLKQNGFVELLEEINEEDNLIEIDISR 228

BLAST of Chy1G011490.1 vs. NCBI nr
Match: XP_022941469.1 (uncharacterized protein LOC111446758 [Cucurbita moschata] >XP_022941470.1 uncharacterized protein LOC111446758 [Cucurbita moschata])

HSP 1 Score: 114 bits (284), Expect = 7.24e-29
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1   MHLDELTRNLPLSEDYSSSEDDDDDSLIEIPLLPNSNGIR---------NLETCLPNLLP 60
           M LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ IR         NLETCLP+LLP
Sbjct: 141 MCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLP 200

Query: 61  DSVLRQHGFVELLEEINEEDNLIEIDISK 80
           DSVL+Q+GFVELLEEINEEDNLIEIDIS+
Sbjct: 201 DSVLKQNGFVELLEEINEEDNLIEIDISR 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7W25.6e-36100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6W95.6e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G101780 PE=4 SV=1[more]
A0A6J1J2I94.6e-2271.91uncharacterized protein LOC111480668 OS=Cucurbita maxima OX=3661 GN=LOC111480668... [more]
A0A6J1FNF57.8e-2271.91uncharacterized protein LOC111446758 OS=Cucurbita moschata OX=3662 GN=LOC1114467... [more]
A0A7J9BC292.4e-1052.56Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_017812 PE=4 ... [more]
Match NameE-valueIdentityDescription
KGN44012.19.97e-48100.00hypothetical protein Csa_018206 [Cucumis sativus][more]
TYK07951.11.12e-47100.00hypothetical protein E5676_scaffold265G00700 [Cucumis melo var. makuwa][more]
XP_022981598.13.22e-2971.91uncharacterized protein LOC111480668 [Cucurbita maxima] >XP_022981599.1 uncharac... [more]
KAG6607751.13.81e-2971.91hypothetical protein SDJN03_01093, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022941469.17.24e-2971.91uncharacterized protein LOC111446758 [Cucurbita moschata] >XP_022941470.1 unchar... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR35708GB|AAD25831.1coord: 4..79
NoneNo IPR availablePANTHERPTHR35708:SF3GB|AAD25831.1coord: 4..79

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy1G011490Chy1G011490gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G011490.1.exon2Chy1G011490.1.exon2exon
Chy1G011490.1.exon1Chy1G011490.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G011490.1.cds2Chy1G011490.1.cds2CDS
Chy1G011490.1.cds1Chy1G011490.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy1G011490.1Chy1G011490.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane