Chy12G221090.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy12G221090.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 18903663 .. 18904122 (+)
Sequence length318
RNA-Seq ExpressionChy12G221090.1
SyntenyChy12G221090.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGAACCTCAGTTCTGTGCCCCAGTTCGTTGAAATTTTCGCACTCTTTCGATCACTTTATCTCTCTCTCTCTCTCTCTGAGCTCGGGGAGGCTCATATAGTCGTATCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTGATTCAAACCCTAACACTTCACAATCCAGCATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCATTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTTTTTTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGGGTTAA

mRNA sequence

ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGAACCTCAGTTCTGTGCCCCACATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCATTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTTTTTTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGGGTTAA

Coding sequence (CDS)

ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGAACCTCAGTTCTGTGCCCCACATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCATTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTTTTTTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGGGTTAA

Protein sequence

MAMAMVIGAHIRTQITHIHPEPQLRSEPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIFKNPNFPPFLRVISFRKYLIDDLLVAFFGRAACYTLLLLFCTFSLG*
Homology
[Close]
BLAST of Chy12G221090.1 vs. ExPASy TrEMBL
Match: A0A0A0LVL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039080 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MAMAMVIGAHIRTQITHIHPEPQLRSEPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60
           MAMAMVIGAHIRTQITHIHPEPQLRS+PQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF
Sbjct: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60

Query: 61  KNPNFPPFLRVISFRKYLIDDLLVAFFGRAACYTLLLLFCTFSL 105
           KNPNFPPFLRV+SFRKYLIDDLLVA  GRAACYTLLLLFCTFSL
Sbjct: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSL 104

[Close]
BLAST of Chy12G221090.1 vs. NCBI nr
Match: KGN64041.1 (hypothetical protein Csa_013264 [Cucumis sativus])

HSP 1 Score: 205 bits (522), Expect = 1.58e-66
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MAMAMVIGAHIRTQITHIHPEPQLRSEPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60
           MAMAMVIGAHIRTQITHIHPEPQLRS+PQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF
Sbjct: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60

Query: 61  KNPNFPPFLRVISFRKYLIDDLLVAFFGRAACYTLLLLFCTFSLG 105
           KNPNFPPFLRV+SFRKYLIDDLLVA  GRAACYTLLLLFCTFSL 
Sbjct: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS 105

[Close]
BLAST of Chy12G221090.1 vs. NCBI nr
Match: KAG7037139.1 (hypothetical protein SDJN02_00761, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 6.67e-07
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 3  MAMVIGAHIRTQITHIHPEPQLRSEPQFCAP 33
          MAM IGA IRTQI HIHP P++RSEPQ CAP
Sbjct: 1  MAMAIGAQIRTQIIHIHPRPEVRSEPQLCAP 31

[Close]
BLAST of Chy12G221090.1 vs. NCBI nr
Match: KAG7020004.1 (hypothetical protein SDJN02_18972, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.5 bits (114), Expect = 7.84e-05
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 5  MVIGAHIRTQITHIHPEPQLRSEPQFCAP 33
          +VIGA IRTQI +IHPE + RSEPQFC P
Sbjct: 47 VVIGAQIRTQINYIHPESEARSEPQFCDP 75

The following BLAST results are available for this feature:
BLAST of Chy12G221090.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G221090.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVL31.3e-4996.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039080 PE=4 SV=1[more]
BLAST of Chy12G221090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64041.11.58e-6695.24hypothetical protein Csa_013264 [Cucumis sativus][more]
KAG7037139.16.67e-0777.42hypothetical protein SDJN02_00761, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7020004.17.84e-0572.41hypothetical protein SDJN02_18972, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Chy12G221090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy12G221090Chy12G221090gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy12G221090.1.exon1Chy12G221090.1.exon1exon
Chy12G221090.1.exon2Chy12G221090.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy12G221090.1.cds1Chy12G221090.1.cds1CDS
Chy12G221090.1.cds2Chy12G221090.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy12G221090.1Chy12G221090.1-proteinpolypeptide