Chy12G213820.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy12G213820.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 12176665 .. 12179370 (-)
Sequence length737
RNA-Seq ExpressionChy12G213820.1
SyntenyChy12G213820.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTGAAGGTGTGAGATGCATGGATCCTACTATTAAGTTAATTTTGCTTCTGATATTCTTCAGAATAGGTTGGTGCCTACCCACCCCTGCCTTATTTGTTTAGATTTCTTTATACAACTTATTTTTTTTTTTATCATTTTTACCTCTATATATATTCCTTGTCTCTAGTAAAATAATGCGAATCTATAAATTTAAATTTGAAGCTCAATCAGATTAGGTCATATTCATCGTTGTATAAATTGGAGCCTTAAAATTTGTAGTATTTTTTAAGATCATGTTTATTGGCGTTTTGCTTCTATTACTGAACTCGTTGATGAACTAAGTTCTTTCCGTTACATGCCAGCATGTGCTTCAACCACTGAAAAAAATTTTGAACACTGTGAAAGGGTTGTAAAAGATTGGGCCTTATCTTCTCTTCATCAAGGTATCAACAATGATAAACATACATTAAAAGATTTACTGTTCTTTCTACATGTTCCAAGAACAGGAGGGCGATCGTACTATCACTGGTAACTTTCAAATCATAAAGTTCGGTGGGTATTAATCACTCAAGTGTCGGAGTCTTAAGTGTTTATTTGGTTTTGTTCTGTAACTATGCAGTTTCTTGAAAAAGTTGTACCCAAGCTCTCAAGAGTGTCCCCGTTCTTATGATAAGCTACGGTTTGATCCCAGGTATAATTTTATGATCCCAAGTATAATTTCATTTTTCCAAGATGATTATTATTTTATTTTATAAATTGTTTCATATGACATTCATTCAACTTTTTAAATGTTATGTCTTACTCGCTTTACTGCCGCCTTGATGTAAAATAATTACCAACCCTTAGTTGCATACTGACGTTATGTTTGATTATGATTGATTATGATTGCTAAAACCGTGACATGCAACTTTAGTATGAACCTGGTAAATTGGTAATTGAATTAAAATAACTAGGATGTGGACGCATGAGCGGTTTACAAATTTTTTTAGTTTAGTTAGCGCAGAAGGTTAGCTTATATAGATAAACAATGAAAAAATGAAACTGAATAAGAAACATCATTAGGACTAGTATGGTGGAAGAACATTGTTTAAAATTTTTTTTCTTCTTTTTCAGTATTATATTTTCTTTATTGTTTTTTGTTGGTGGGGAGTATGGGATGGGTCCTCCAAAGTATATTGGGAAACAGATGGAAAATCAGAACCTTGAACCTTTTTTTTTTTTTTTTTTTTAATTTTGTATTCAAGACTGACTCTTTGATAGTTTTAACTAATTTTGTGCGTTTGTATGGTATTTGAATCTGAATTGCAGCAAGACTAAGTGCAGATTGTTAGCTACTCATGATGATTATAGCATGATGGAAAAACTACAGAAGGAGAGGACTTCGGTGGTGACAATTGTCAGGAATCCAGTTGACCGGGTTCTTAGTTCATATGAATTTTCAGTTGAGGTAGCAGCTAGATTTTTGGTACATCCTGACCTAGCTTCTGCAACCAAAATGTCCAAACGTGTGCGTGCAAAGACAAATGGAGTGAGCACACTGGATATTTGGCCGTGGAAGTATTTGGTTCCATGGATTCGGGGAGACCTATTTACTCGAGTATGTGTCCTGTTGGCTGATCTTGTGCTTCTTAATGATTATTTTCTTTTAACTCAAGCGGAGTGAAGATAAATATAATTAGATCTTGTGCATTTTTAATGATTGTTTTGTACTTTCTTGTTTGGTCGGGGAGCTCTGTTTCTTTCTCGTTTGGTTTTCATCGATAGTTGATTAATAGGGAAACAACGGAGGTTGCCACTTCTCTGTCTTTAATTGGGGAGTTCAGGTTTTAGGCTTGGGAGAAGGGATATTGAGTTTGGAGTCTCGACTCCTTAGAGGGTTTCTCTTGTAAGTCTTTTTGCATTTGCTGGATCCCTCTCTCGTTAGTAAGTCTGTCTTGGTTGCTTTGTGGAGAAGATTTTGAAGAAAGTCAACTTCTTTTCTTGGCAAGTTTTTCTCAGTTGTGTGAATTATATGGACTGATTTTTGAGGAAGTTAACCTTTGGGTAACGGTTTTGAAGACCTTTTGTGGTTGCTCTTTAGGCAACATTGTACTCAGTTGGACCCCTTTTCTTTAATGGGGGGTTTCGTGGGTTTGGTTTTTGAATTATTCCATTTTTTCTCCATAAAAGTAGTTGTTTCTTTATATATAAAGCTTTGGAGCTGTTTTAGTATGAATCAGAATTCGATAAGTTAAGCAAGTTGTATTCGTAGTTTGAAGCCAAACCCGTCTGGAACTTTGTTTTTTGGCTTGCTTTAATGGATGATCTTGTCATTTCTTTTTTTTTTCTGGAACAACTGAATCTATTTTTCATTAGCTTGTCAATAATGATTTTCAAGTGCTGAAACTAATAGGGAAAATAGTTGCTGCCACAAACTAATTTGGAGTTGTGCGTAGCTTTGGATGGAGATGTTAGAATCTAATAACAAATAATTTTTGTTTTGGCTCTGTTAGCCTATGTTTGTGATCGATTAATCTTGACAATTTCTCTCTTATTTACTACAATCTTATAAAGAGATTACTGTTTGCCCACTGTAATGAACAGAGAGATGTTAGAAGACAGAAAGGTTCAAGTGAAGCTAAAAGCGACAGTCCATATGACATGGAGGACATTCTTATGCCACTAAAGGAGTTTGTTGATGACCCCATTGCTCATGATCTTGTTCATAATGGGGCTACTTTCCAG

mRNA sequence

TGGTTGAAGGTGTGAGATGCATGGATCCTACTATTAAGTTAATTTTGCTTCTGATATTCTTCAGAATAGCATGTGCTTCAACCACTGAAAAAAATTTTGAACACTGTGAAAGGGTTGTAAAAGATTGGGCCTTATCTTCTCTTCATCAAGGTATCAACAATGATAAACATACATTAAAAGATTTACTGTTCTTTCTACATGTTCCAAGAACAGGAGGGCGATCGTACTATCACTGTTTCTTGAAAAAGTTGTACCCAAGCTCTCAAGAGTGTCCCCGTTCTTATGATAAGCTACGGTTTGATCCCAGCAAGACTAAGTGCAGATTGTTAGCTACTCATGATGATTATAGCATGATGGAAAAACTACAGAAGGAGAGGACTTCGGTGGTGACAATTGTCAGGAATCCAGTTGACCGGGTTCTTAGTTCATATGAATTTTCAGTTGAGGTAGCAGCTAGATTTTTGGTACATCCTGACCTAGCTTCTGCAACCAAAATGTCCAAACGTGTGCGTGCAAAGACAAATGGAGTGAGCACACTGGATATTTGGCCGTGGAAGTATTTGGTTCCATGGATTCGGGGAGACCTATTTACTCGAAGAGATGTTAGAAGACAGAAAGGTTCAAGTGAAGCTAAAAGCGACAGTCCATATGACATGGAGGACATTCTTATGCCACTAAAGGAGTTTGTTGATGACCCCATTGCTCATGATCTTGTTCATAATGGGGCTACTTTCCAG

Coding sequence (CDS)

TGGTTGAAGGTGTGAGATGCATGGATCCTACTATTAAGTTAATTTTGCTTCTGATATTCTTCAGAATAGCATGTGCTTCAACCACTGAAAAAAATTTTGAACACTGTGAAAGGGTTGTAAAAGATTGGGCCTTATCTTCTCTTCATCAAGGTATCAACAATGATAAACATACATTAAAAGATTTACTGTTCTTTCTACATGTTCCAAGAACAGGAGGGCGATCGTACTATCACTGTTTCTTGAAAAAGTTGTACCCAAGCTCTCAAGAGTGTCCCCGTTCTTATGATAAGCTACGGTTTGATCCCAGCAAGACTAAGTGCAGATTGTTAGCTACTCATGATGATTATAGCATGATGGAAAAACTACAGAAGGAGAGGACTTCGGTGGTGACAATTGTCAGGAATCCAGTTGACCGGGTTCTTAGTTCATATGAATTTTCAGTTGAGGTAGCAGCTAGATTTTTGGTACATCCTGACCTAGCTTCTGCAACCAAAATGTCCAAACGTGTGCGTGCAAAGACAAATGGAGTGAGCACACTGGATATTTGGCCGTGGAAGTATTTGGTTCCATGGATTCGGGGAGACCTATTTACTCGAAGAGATGTTAGAAGACAGAAAGGTTCAAGTGAAGCTAAAAGCGACAGTCCATATGACATGGAGGACATTCTTATGCCACTAAAGGAGTTTGTTGATGACCCCATTGCTCATGATCTTGTTCATAATGGGGCTACTTTCCAG

Protein sequence

WLKV*DAWILLLS*FCF*YSSE*HVLQPLKKILNTVKGL*KIGPYLLFIKVSTMINIH*KIYCSFYMFQEQEGDRTITVS*KSCTQALKSVPVLMISYGLIPARLSADC*LLMMIIA*WKNYRRRGLRW*QLSGIQLTGFLVHMNFQLR*QLDFWYILT*LLQPKCPNVCVQRQME*AHWIFGRGSIWFHGFGETYLLEEMLEDRKVQVKLKATVHMTWRTFLCH*RSLLMTPLLMILFIMGLLSX
Homology
The following BLAST results are available for this feature:
BLAST of Chy12G213820.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G213820.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G213820.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G213820.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy12G213820Chy12G213820gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy12G213820.1.exon5Chy12G213820.1.exon5exon
Chy12G213820.1.exon4Chy12G213820.1.exon4exon
Chy12G213820.1.exon3Chy12G213820.1.exon3exon
Chy12G213820.1.exon2Chy12G213820.1.exon2exon
Chy12G213820.1.exon1Chy12G213820.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy12G213820.1.cds5Chy12G213820.1.cds5CDS
Chy12G213820.1.cds4Chy12G213820.1.cds4CDS
Chy12G213820.1.cds3Chy12G213820.1.cds3CDS
Chy12G213820.1.cds2Chy12G213820.1.cds2CDS
Chy12G213820.1.cds1Chy12G213820.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy12G213820.1Chy12G213820.1-proteinpolypeptide