Chy11G204880.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy11G204880.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 25233235 .. 25233558 (+)
Sequence length324
RNA-Seq ExpressionChy11G204880.1
SyntenyChy11G204880.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTTTAAACAGACCAGGGAAAGCCAGTACTGGAAAATTTGGAGATGTAGTTCATGGGTCTGGGTTTGCGATTGAACCACCGGGGGATGATCCTGGATCGTCGTTCGTCGGTGATGTAGTGGGCAGAGTCGTCGATGATCGAATGGGGAAGGTGAACGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAAAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCGCGAGGGAGAAGACAGAAAACAAAGTTGTTACGAGGACAGTTTAA

mRNA sequence

ATGGATTTTTTAAACAGACCAGGGAAAGCCAGTACTGGAAAATTTGGAGATGTAGTTCATGGGTCTGGGTTTGCGATTGAACCACCGGGGGATGATCCTGGATCGTCGTTCGTCGGTGATGTAGTGGGCAGAGTCGTCGATGATCGAATGGGGAAGGTGAACGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAAAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCGCGAGGGAGAAGACAGAAAACAAAGTTGTTACGAGGACAGTTTAA

Coding sequence (CDS)

ATGGATTTTTTAAACAGACCAGGGAAAGCCAGTACTGGAAAATTTGGAGATGTAGTTCATGGGTCTGGGTTTGCGATTGAACCACCGGGGGATGATCCTGGATCGTCGTTCGTCGGTGATGTAGTGGGCAGAGTCGTCGATGATCGAATGGGGAAGGTGAACGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAAAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCGCGAGGGAGAAGACAGAAAACAAAGTTGTTACGAGGACAGTTTAA

Protein sequence

MDFLNRPGKASTGKFGDVVHGSGFAIEPPGDDPGSSFVGDVVGRVVDDRMGKVNEIKAREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLAREKTENKVVTRTV*
Homology
[Close]
BLAST of Chy11G204880.1 vs. ExPASy TrEMBL
Match: A0A0A0K980 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 50  MGKVNEIKAREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLAREKTENKVVTRTV 108
           MGKV EIK REVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVL REKTENKVV RTV
Sbjct: 1   MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

[Close]
BLAST of Chy11G204880.1 vs. NCBI nr
Match: KGN46325.1 (hypothetical protein Csa_005279 [Cucumis sativus])

HSP 1 Score: 108 bits (269), Expect = 1.65e-28
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 50  MGKVNEIKAREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLAREKTENKVVTRTV 107
           MGKV EIK REVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVL REKTENKVV RTV
Sbjct: 1   MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

The following BLAST results are available for this feature:
BLAST of Chy11G204880.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G204880.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9803.7e-2093.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1[more]
BLAST of Chy11G204880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46325.11.65e-2893.10hypothetical protein Csa_005279 [Cucumis sativus][more]
BLAST of Chy11G204880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy11G204880Chy11G204880gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G204880.1.exon1Chy11G204880.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G204880.1.cds1Chy11G204880.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy11G204880.1Chy11G204880.1-proteinpolypeptide