Chy10G174410.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy10G174410.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSWIM-type domain-containing protein
LocationchrH10: 6242819 .. 6243385 (+)
Sequence length219
RNA-Seq ExpressionChy10G174410.1
SyntenyChy10G174410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCTACTTGTTGTCCATATTCAAACAATGTTATTATGGTCGCTTCCATCCAATCCAACACTCAGATTATTGGCCAGAGTTATCATTCACTGAAGTTCGCCCCAATGCGGACTTACTTAAAGGACCCATTTCCTTTCTCGCGCTGTTCATCTTCCCACAGATTTCTGAGAATGTGGTACTTATTGAGTAGTTCGCTCGCCATTTCGGGGTCCTGCCTTAATTCAAAGAATTCTTTGGTTTCCCTCAACTTTTCATAAAGTCTTTGAACCCTTTGTTCTTTTCTTATTTCAGTAAGTAGGTTTCAAAACATAAGAGAGAAAGTTCCTAATTCAAGTAGGACCTTCCGTAATTAACCGAAGGAGTCCGGGGGAAGGGCCTTTTTTCAGAGGGTTCAGACGGCCGGCCAAAAGGTTAGACGAAACCGTCGACCAAGAACTACTAGGATCCAAAATGAAATGGATTGAAAAGAGTCTAGTCAATCACTCAGATTCACGGTCTGTAAAGTAGAAGGACATAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCTTCAAGACACTGA

mRNA sequence

ATGAATGCTACTTGTTATTATTGGCCAGAGTTATCATTCACTGAAGTTCGCCCCAATGCGGACTTACTTAAAGGACCCCGTCGACCAAGAACTACTAGGATCCAAAATGAAATGGATTGAAAAGAGTCTAGTCAATCACTCAGATTCACGGTCTGTAAAGTAGAAGGACATAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCTTCAAGACACTGA

Coding sequence (CDS)

ATGAATGCTACTTGTTATTATTGGCCAGAGTTATCATTCACTGAAGTTCGCCCCAATGCGGACTTACTTAAAGGACCCCGTCGACCAAGAACTACTAGGATCCAAAATGAAATGGATTGAAAAGAGTCTAGTCAATCACTCAGATTCACGGTCTGTAAAGTAGAAGGACATAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCTTCAAGACACTGA

Protein sequence

MNATCYYWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRASSSSRH*
Homology
[Close]
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-27
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 1  MNATCYYWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRR 60
          MNAT YYW E+SFTEVRPNADLLK P RPRTTRIQNEMD KESSQSLR TV KVEGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRASSSSRH 73
          TCPQRASSSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.8e-26
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTE+RPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 225 SSSSRH 230

[Close]
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.7e-25
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  SSSSRH 73
           SSSSRH
Sbjct: 260 SSSSRH 265

[Close]
BLAST of Chy10G174410.1 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 129 bits (324), Expect = 2.41e-37
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 1  MNATCYYWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRR 60
          MNAT YYW E+SFTEVRPNADLLK P RPRTTRIQNEMD KESSQSLR TV KVEGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRASSSSRH 72
          TCPQRASSSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]
BLAST of Chy10G174410.1 vs. NCBI nr
Match: KAA0033661.1 (hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 3.64e-34
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTE+RPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 225 SSSSRH 230

[Close]
BLAST of Chy10G174410.1 vs. NCBI nr
Match: KAA0063901.1 (hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK15904.1 hypothetical protein E5676_scaffold94G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 9.65e-33
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 260 SSSSRH 265

[Close]
BLAST of Chy10G174410.1 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 3.10e-32
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of Chy10G174410.1 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 3.10e-32
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNADLLKGPRRPRTTRIQNEMD*KESSQSLRFTVCKVEGHNRRTCPQRA 66
           YWPELSFTEVRPNADLLKGP RPRTTRI NEMD KES QSLR T+CKVEGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  SSSSRH 72
           SSSSRH
Sbjct: 666 SSSSRH 671

The following BLAST results are available for this feature:
BLAST of Chy10G174410.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G174410.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT577.9e-2788.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1[more]
A0A5D3BS923.0e-2690.91SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TN563.0e-2690.91SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7SW508.8e-2689.39SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7VDU85.7e-2587.88SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Chy10G174410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51592.12.41e-3788.89hypothetical protein Csa_008873 [Cucumis sativus][more]
KAA0033661.13.64e-3489.39hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa][more]
KAA0063901.19.65e-3387.88hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK1590... [more]
KAA0044308.13.10e-3290.91uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa][more]
TYK02543.13.10e-3290.91uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa][more]
BLAST of Chy10G174410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy10G174410Chy10G174410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy10G174410.1.exon1Chy10G174410.1.exon1exon
Chy10G174410.1.exon2Chy10G174410.1.exon2exon
Chy10G174410.1.exon3Chy10G174410.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy10G174410.1.cds1Chy10G174410.1.cds1CDS
Chy10G174410.1.cds2Chy10G174410.1.cds2CDS
Chy10G174410.1.cds3Chy10G174410.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy10G174410.1Chy10G174410.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding