CcUC11G222630.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC11G222630.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr11: 27184421 .. 27189249 (+)
Sequence length666
RNA-Seq ExpressionCcUC11G222630.1
SyntenyCcUC11G222630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAAAAGGAGATGAAAAGAAAAGTTATGGAATCAGATATTCCCACGAATGTCTCAGTTTCGCTGGCGCGAACCCGCCAATACTCATCCGATCCCATTCGCGCCAAAATGGCGCCCCAAATCACCGCTCGATGGGCGAAACCTAAAACCCATTTGCATCAGACGGTGCCTGGCCCCTGCTCTCCGATTCACTCAATTCCCACGATCACATAGATTTTCAATTTCACCAATCCGATCCTTCTCATGTCGGTCGTGCCTTCGTCAGATAGAGAGAGATTGGTGGGTTTTGTGACAATCCCCCCGGTTCGCAGTACGGGAAATTCAGTTTTCAAATGCACCGACACAGGGCGCGTTAATGACGAAGCGCTCTTCGCCATTTCCGTCGACTTTGCTCCTCCTTACGAGGTACGATCTGTGATTCTCTACTCTTGTAATCTTCACTAGTTTCTCTCGTCTGTATAAATCACCATTGTTTTGTTTACAATCAGCTCTCAGAGCTCGCCTTGGTCGCGCTTATCTTCTTCTTCACCAGAGAAGTACATGCGTGTTAACTAGCTTCTTCAATCTTGATTTCTTTCTAGGGCTGGAGTTCTGGTGTTAAGATTGATTGTTGTTTTCGACATTAATTCTTTGAATATTTGGCTTTCTGGAATTGATTCGTAAGATTACTTAGTGTAGCGAACTGGAACGATTTCCAATTTTGCCCCAAATTTGGTGAAACAAAGATTGCATAACGACGAATTAGGTATGTTCTATTTCTATCAGAGCGATCGGCAGTCACCAACTCGTATTTCCAGCTGCACTTCAAGATGGATTCTCAAACAAAATATCACATCCACGTGGCGTAACCCATTTCGATTTCATTTGGCGAGGCTAAAGAAAACTATATGGAAGGAGTAATAAATTAGTTATTATAGTTTATGCATAGTTTGAGGATTATAATAATGATTAAGTTATTTGTGTTTGGAATCAATTTTATTTTAGTATGAATTATAATAATATGTGTTAAGCGTGCATGCTATTTTAGTCTATGTAGAAAATAATAAATATTATATCAAGAAGAGAAAGAAAGAATGAGTAGGGAAATAGTAAACACGGTAGTAAATAGTAAAAATAGTAACAAAGAGATATCTGAAAGAATAGTGTGAAGTTTATTGTAAGTTATAATAGTTAAAAATACAAACTATTATAATTAGCATCTAAATATAGGTGAACTAGTCAACTTTCCAAAATTGTGGCCCAAGCACACCCTAACATTTTTGGCCCCACAACGAGTGAGGGTTCAATTGGCTTCTATTTGGTTGTTTGTTGCGGTTCAACCGCTAGAACAGTCCTCAAGTTGCGGCCCTTTCATCAATTCCCCACCCTTGGCATGAGATTCTTGATACTGGAGTTGCATGGGGAATGGGTTTTCCTCTAGTAATTTCCTTGTCTTTATGATATCTTTTAGTAGGCTGTAATGATAATTAATCAAGTTTATTGTCGGTATGAAGAGCTTAATTATGAATTATCAAAGTGTTCACAAATAACTTTATAAGACCAATTTTTTTTGTTACATAATGTCAACCTCTCTTTGGAAGATATACAAAAATATAGTTAAGATGGAGATTTGTTGAAAAAATTGTGATGAAAGTCTCACATTGGTTAGACAATGGAAGAATTATGAATATATAAGAGAGAGAATAACATTTCTATTAGTATAAAATCTTTTGGGTCTAAAAGTAAAGACACATAAGGATTTATGCTCTAAATATAAAATTTGACTGTGAATGCTAACATGAACTTGTATTATCAATCTCGAATCGATGAATTAGTATGAAAAATGGACATAAAATTAAAAGTTGGAAGAATTATTAAACACAACAGTTCAAATAATGGTGGATGTGTACAAAGGGGTTTTCTTTTGAGTATAGTTTAACATTATGTATGTTTATATATCGACTATTAATTCAATTTAATTTGTTTCTTTCCACAGCTGGTCCGGGTTTCTATATCTAGTATGTATTCGCCGAGGAGCAAAATAAATTATGTCAAATGAAAGCGCTTCAATATCTAATTCACTCAAATGGCCCAGTAAGTTTGCTTCCCTTCTTCCCAATTTATATTATTTAACAAAGAAAAATTAGTAACAATAACAACAATAATAATGGGAAAAAAATATAGCTACTACATCGACAAAATTATGTTAAAATTTTGACATTTTTTCTACAAAAGGTTGTGGTAAGCAATCTGTTTACTTTTATAACATCAGATTTTTTTGTACAAGGGCCAGACATAAACCAACTTTAGTTAAGGAATAATGGAAGTAGTTTAAACCATCAAATGATCTTTGTTTTCTATAATTAGATTTTTGAAGTCCAACCCCTTTTCCCTTCTATCCATTTGTTAATCCTAGGAGGAAGCTGCTTCTTTCTCTTCTCTCTCCTTTTATTTTATTTTATTTTTTCAACAAATGTGAAAATTTGAGATTTCAATACTTGGCCTTCAGACATGTGCGTACTTATCATTATGATGTAACTTTTGAATTGTTTGAAAAAAAATTGAAACCACATGAATTTTAGAAAAATGTCCATTATGTAATTGTGTTCAATTTTGTCCCTAGTGTTGTGAAAATTGAAAATTTACCCCAATCTTATTGCTTTCTATTAGACGTTTTAATGCAGATTATTAACGGAGGGGTTTTGTGGGAATTTTCTTTTGAAGATGATGGTAAAATTGAAACCTTTAGAACATGAGCTCAATTTAACCAACTATACACATATATGTCGCCCCCAACAAAGACTTAAAAAGAAAGAAACGAAGAGAATATAACTTTTTAAGGCCCATTGTTATTATTAGACACGTCATCTTCTAGAGAATACCATTGCCCTGTTACTGGTCCAAGGAAGGTTTGTCCTCCTTTTTCCTTTTTCTGTAATACTAATAATATCATCTCCCAAAAGTTCATGATATCAGAACTCAGAAGCTGTGCCCTTTGAGTAAAACTTATGTGCCGTAGATTATCTCTGAAGTAATGTTTTTGATGTGGCCCATGTAGGGCACAAGCAGCTACGGACTCTCAGGAGGACGACCCCATTTTGTTGAATTTTGACAAAATATTAGAAGTATAGTTATCTCACATCGAAAAACTGAAGAAAGTGATGGACGCCAAACACTATAAAAGGAATCTATGCCTTGAGAGACATAAATTTGTGCCATTTAAAAACATTTTTAGTTTAAATGTGCTAACTCTAGTTAAATCTTCTTTTGTATTATCTAGTTTGACCATGAGAAAAAGGGTCTAAATAGTATAAAGGTTTTGAGAGAGTGTTCTTGTAATTGAGATTAGGATAGAGAATTATTCTATGTGACTATAATAATTTTTTAGATAATGGATCTTTTTCTGGTGATCATAGTTTTTATTCGAATTTGGTGTTTTTCACGTAAATTTTGGTGTCAATTTTAAAGTCAGAGGGTGTTCCTAATACATTTGTGCCTTATTCGGAAGACTGTTGATGATAGTCAGCAAAGACCTAATTCAAGCGCCTAAAAACCGACTTAAAAACAAAAGAAGAGAAGAAAAAGAAGAGAAGAATGAAGGAAAAGAAAAAGCACCTAACACTGTATAGGCTTGGACTGTGTCTAAAGGTTGCTTGTACATCATTGTCTTTTCGTAGAGGAAAGAAAAAAGGTTCTCTCTAGAAGCGAATGAACTTGAACAAGATACCCTAACTTTTGAATGTCTAACTAGAGGAACCAAGTGAGTGGTACCGGTACTCCATGCTTTTTCATCTTTACTCATATTTTGAGAATCATTGTACGTATATAAATGAGACAACTGTATACATTTCTATTGGGTATGAAGTCTACGGATAAAATCAAAAGTAAAGTCATGTGAGCTCATATAATTACGTCCAAACTAGATGTTCCTCGGCCCTAATAGAGTTAGGAGTCTTGTAAACCTTTATGACAAGTCCTAACCAAATGGTACTGCTTTCACACTTTTTTGAAGGTTAGAGTTGTTTTTATCAGATTTGACTCGGTGAAATAGGCATAATGTGAAACTGCAGTTTTTATTTCTGGAACACTGAACACATTTAAGTTATGTATGTGTTGTTAGACTTAGATGGTGGAGCTGTTTGGTTCCGGAATTTTAATTTGCTAGGGAACTGCTTCCTCCACAAAAATGTTGCGGACAGTGAAGCTGCTGGAGATGACATAATGCAATGCAGCTCGTACAACCCTAGATCGTAATATGCATTTGTACCAAATTAAAGATTGTCAGCATGCAGTTCCGTGAATCACAAGAATCGAGGTGTACGGTACTGGCTCCTAATATATGATTTTTCTTTTCCTTTTCTTTTTTTTTTTTTTAAATAAGTGGTTTCTGCTTTACTTTTGCACGGTTTACTGTATTTATTTGACAGTATGCTTTTACTGGTGGACAATATCCAGATTCCAGGGTTTACCAAGATCATAGTGGCATGCATGTTACATTCAAAAGGTAGCTAATGCAGCCAATTTACTTGGGGAGGTTGGGTCCTGTCCAGCCTTATAAAACCAAATAAAATCCTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAGATATTAGTTACTTTAATTTAATTTACGTTAACATGCTTTATGCGTATATTTACTAAAAGAAAGAACAATTAAGTACTTTATGCACCCTCTTCAAATCTCTACACATCTTTTCAAAGGGGTTGAATTTATTTATTGTGAACTAGTTCCTTTCTTTTACTCTGATCAGGAAATTCAGCCTACTCAACCAGGTCAGAGCTCTTGCACAGTGGCATCACCCGTGCGGCACTTCAGACGCTTACAGCTGAG

mRNA sequence

AGGAAAAAGGAGATGAAAAGAAAAGTTATGGAATCAGATATTCCCACGAATGTCTCAGTTTCGCTGGCGCGAACCCGCCAATACTCATCCGATCCCATTCGCGCCAAAATGGCGCCCCAAATCACCGCTCGATGGGCGAAACCTAAAACCCATTTGCATCAGACGATTTTCAATTTCACCAATCCGATCCTTCTCATGTCGGTCGTGCCTTCGTCAGATAGAGAGAGATTGGTGGGTTTTGTGACAATCCCCCCGGTTCGCAGTACGGGAAATTCAGTTTTCAAATGCACCGACACAGGGCGCGTTAATGACGAAGCGCTCTTCGCCATTTCCGTCGACTTTGCTCCTCCTTACGAGCTGGTCCGGGTTTCTATATCTAACTTAGATGGTGGAGCTGTTTGGTTCCGGAATTTTAATTTGCTAGGGAACTGCTTCCTCCACAAAAATGTTGCGGACAGTGAAGCTGCTGGAGATGACATAATGCAATGCAGCTCGTACAACCCTAGATCTATGCTTTTACTGGTGGACAATATCCAGATTCCAGGGTTTACCAAGATCATAGTGGCATGCATGTTACATTCAAAAGGAAATTCAGCCTACTCAACCAGGTCAGAGCTCTTGCACAGTGGCATCACCCGTGCGGCACTTCAGACGCTTACAGCTGAG

Coding sequence (CDS)

AGGAAAAAGGAGATGAAAAGAAAAGTTATGGAATCAGATATTCCCACGAATGTCTCAGTTTCGCTGGCGCGAACCCGCCAATACTCATCCGATCCCATTCGCGCCAAAATGGCGCCCCAAATCACCGCTCGATGGGCGAAACCTAAAACCCATTTGCATCAGACGATTTTCAATTTCACCAATCCGATCCTTCTCATGTCGGTCGTGCCTTCGTCAGATAGAGAGAGATTGGTGGGTTTTGTGACAATCCCCCCGGTTCGCAGTACGGGAAATTCAGTTTTCAAATGCACCGACACAGGGCGCGTTAATGACGAAGCGCTCTTCGCCATTTCCGTCGACTTTGCTCCTCCTTACGAGCTGGTCCGGGTTTCTATATCTAACTTAGATGGTGGAGCTGTTTGGTTCCGGAATTTTAATTTGCTAGGGAACTGCTTCCTCCACAAAAATGTTGCGGACAGTGAAGCTGCTGGAGATGACATAATGCAATGCAGCTCGTACAACCCTAGATCTATGCTTTTACTGGTGGACAATATCCAGATTCCAGGGTTTACCAAGATCATAGTGGCATGCATGTTACATTCAAAAGGAAATTCAGCCTACTCAACCAGGTCAGAGCTCTTGCACAGTGGCATCACCCGTGCGGCACTTCAGACGCTTACAGCTGAG

Protein sequence

RKKEMKRKVMESDIPTNVSVSLARTRQYSSDPIRAKMAPQITARWAKPKTHLHQTIFNFTNPILLMSVVPSSDRERLVGFVTIPPVRSTGNSVFKCTDTGRVNDEALFAISVDFAPPYELVRVSISNLDGGAVWFRNFNLLGNCFLHKNVADSEAAGDDIMQCSSYNPRSMLLLVDNIQIPGFTKIIVACMLHSKGNSAYSTRSELLHSGITRAALQTLTAE
Homology
The following BLAST results are available for this feature:
BLAST of CcUC11G222630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC11G222630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC11G222630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC11G222630.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC11G222630CcUC11G222630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27184421..27184585exon
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27184634..27184825exon
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27186396..27186417exon
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27188520..27188649exon
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27188827..27188903exon
CcUC11G222630.1-exonCcUC11G222630.1-exon-CicolChr11:27189170..27189249exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27184421..27184585CDS
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27184634..27184825CDS
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27186396..27186417CDS
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27188520..27188649CDS
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27188827..27188903CDS
CcUC11G222630.1-cdsCcUC11G222630.1-cds-CicolChr11:27189170..27189249CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC11G222630.1CcUC11G222630.1-proteinpolypeptide