CcUC11G211700.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC11G211700.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSi660066d07
LocationCicolChr11: 3717079 .. 3719752 (+)
Sequence length720
RNA-Seq ExpressionCcUC11G211700.1
SyntenyCcUC11G211700.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCTCGACAAAACCATTTAAATTAAGGCTGTAAATGATGAGGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTAGTTTGAGAGCGTTTTGAGACATTGTGTGGAGTTGGTATGTTTTTGTGCTGAACCATTCTGCAACGATTTTGGCTGTTTCTTTGGGACTTCTAGTGAACACTCCAGCTCCATTGTCTACAACATATGGAACATTTCCTTTTTCCTAAGAAGAAAATGTTTCGCAATGTTAAAAAAGTATTGATATAATTAAATTTACTATAACCTATTAATTTAAATTTTTGAGTTGAGTGGTGATTTAAAGTGATATCAAAGCAAGAGGTCATGACTCATAATATTTTCATTTATTTGAACCTAACCCAACCCAAACCGTGGGTTGATTGGATTTTTCGAACACCCCTATCTGAATCTCTATAATGTCATTTCTTTTTCGATTTATATTGATTGTCACAAATTTTTAAGCTCACAAGAGAGGGAGAGTATTGAAAGTTTTTATATAATTAAATTTAGTGTAACCCATTAGCTGAGCTTTTTCTACTGAGCAGTGATTTGACATCCAATAAGTTTACTATAGAAACTCTAACTTAAAGCTTAATGAAAATAACGAGTTTGGTCACTTACTTGTCCCGGAATGTAATCGTTTAGAATGATTGGAAGCCCCCGAATCAAAGCTTCTGCAATTGTACCAGGACCAGCCTATGAACAAAAATCCGACATTATTCATTATCCCACAAGCATTTATCAATCAAATTTATTTTGTTATACAATATGATATCTAATTCTATAAGAAAACTTAAGGTAATGTTTAAACCTTAATTAAGGCAATGAAAGGACAAAGCATATTATTTACTTGGGTTGGTTTTAGCTCAAGTGTTCATACTCTTGATCATAAACAATAGGTTTCTAGTAGCATATCAAGAAACGAAGCAAAGACATACTTTTGTTATTATACAGTCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGGTAAGTCTGGATCCATCTCAAGTTCTTCTCTTAGTTGATCCTATTATGAAGGCAAATAATCAAACCGAGCAACCACGAAGAGCGTAATCAGGTCTCCATCAAAACAAAATTACATGTGTTGTGCTGCATTAAAATGTAAAGATCTACCTTCTGGAGTACTGCTCGAGCGAAGGACGGCCTGATGGGTAGGCCATAGACACGAACTTGGGACTCTTCCATGCCGTCGAGCAAGGCTCTCTTGGCTACTGCCTCTGATGCGCAGTAGCATCTGTTTACACCAGGATGAAACCTGAATTTTTAGTGTTCAAATGTTAGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGGTGTTTAAGTCTGTTATGACTGTAACAAACACCACTTTTTTCTGAAGGCCTTGCCATTTGAGAACCCATAAAGGAATATGTTGCATCAGTGGATGAACACTGATGATAATATCTGGCTTATACTCCATTAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTAAGTAGCCTCATAAGATCAATTTTTCATGGTCAAGATTTCCAGCAAGATATTTGTTATTATTGTTATTTTTAATTTTTAATGATTGGGGTATCAATACCCTCTTTGCATTGCGATCATGGTTCACCCTTCAACATTTTCACATAGAGAGTTGAACTTGATATATTTGGAGGATATTGCCAAGCACATACCGAAGGTGATACGACTAAATTTTAGTTTTCTACATCCTCTACTTGGTTACTTGGTTATGTTGAGTGTGTACAAAATAATTAAAAACGAGTTCAAGATAAGGAATCAATCTAAAATGAGATTAAATATGAAACTAATGCAACAATGAGCTGAGCCAGCACATTCAAATATGTTAATGACAAGAGTATTGTCAAACAAGACAACGTGTACAAAAGTACATTGAAAAGATTACACAATTGTTCGAGTTTTTGGTTTTAGACATGGTTGTCTTCTCTTCAACGTATCGCTATGTTGTTTCTCTCTCATTTTGTACTAACTTGCAGGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGTATTGAGTTTGATAATATATTGATAAGATTAACGAGAATATTATATGTACTTTGCATAGTAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

mRNA sequence

ATGTCGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTATCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

Coding sequence (CDS)

ATGTCGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTATCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

Protein sequence

MSSTCMGCLPSDHAGRRGRGCPERCRRQLRVVLSQAPIHFSICFSKPLTCKRGRKGDVMDAQGQRKMYQSASFEGEKLPKNDFKLTLTGIFHSKASREEANALFLPQIITSCPIGFSFFVSKRDSARAFAVFFTGPIPSPPPMSSTADKKLKDQQALVENRESNSNLDANHVGWQTSFHFPSNKKSSKEVRNLTQEIMLSLLIIFGYDGRRRSQQDRRSESTEERYYEMQPSIAEHALP
Homology
[Close]
BLAST of CcUC11G211700.1 vs. ExPASy TrEMBL
Match: A0A0A9JD95 (Si660066d07 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 111 SCPIGFSFFVSKRDSARAFAVFFTGPIPSPPPMSSTA 148
           SCPIGF   +S  DS RAFAVF TGP+PSPPP+SSTA
Sbjct: 4   SCPIGFPSSLSNNDSPRAFAVFLTGPMPSPPPISSTA 40

The following BLAST results are available for this feature:
BLAST of CcUC11G211700.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC11G211700.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC11G211700.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9JD953.3e-0572.97Si660066d07 OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CcUC11G211700.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..239

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC11G211700CcUC11G211700gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3717079..3717083exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3717126..3717219exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3718111..3718453exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3718769..3718851exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3718983..3719050exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3719563..3719598exon
CcUC11G211700.1-exonCcUC11G211700.1-exon-CicolChr11:3719662..3719752exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3717079..3717083CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3717126..3717219CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3718111..3718453CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3718769..3718851CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3718983..3719050CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3719563..3719598CDS
CcUC11G211700.1-cdsCcUC11G211700.1-cds-CicolChr11:3719662..3719752CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC11G211700.1CcUC11G211700.1-proteinpolypeptide