CcUC11G211700 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G211700
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Si660066d07
Location	CicolChr11: 3717079 .. 3719752 (+)
RNA-Seq Expression	CcUC11G211700
Synteny	CcUC11G211700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTCGACAAAACCATTTAAATTAAGGCTGTAAATGATGAGGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTAGTTTGAGAGCGTTTTGAGACATTGTGTGGAGTTGGTATGTTTTTGTGCTGAACCATTCTGCAACGATTTTGGCTGTTTCTTTGGGACTTCTAGTGAACACTCCAGCTCCATTGTCTACAACATATGGAACATTTCCTTTTTCCTAAGAAGAAAATGTTTCGCAATGTTAAAAAAGTATTGATATAATTAAATTTACTATAACCTATTAATTTAAATTTTTGAGTTGAGTGGTGATTTAAAGTGATATCAAAGCAAGAGGTCATGACTCATAATATTTTCATTTATTTGAACCTAACCCAACCCAAACCGTGGGTTGATTGGATTTTTCGAACACCCCTATCTGAATCTCTATAATGTCATTTCTTTTTCGATTTATATTGATTGTCACAAATTTTTAAGCTCACAAGAGAGGGAGAGTATTGAAAGTTTTTATATAATTAAATTTAGTGTAACCCATTAGCTGAGCTTTTTCTACTGAGCAGTGATTTGACATCCAATAAGTTTACTATAGAAACTCTAACTTAAAGCTTAATGAAAATAACGAGTTTGGTCACTTACTTGTCCCGGAATGTAATCGTTTAGAATGATTGGAAGCCCCCGAATCAAAGCTTCTGCAATTGTACCAGGACCAGCCTATGAACAAAAATCCGACATTATTCATTATCCCACAAGCATTTATCAATCAAATTTATTTTGTTATACAATATGATATCTAATTCTATAAGAAAACTTAAGGTAATGTTTAAACCTTAATTAAGGCAATGAAAGGACAAAGCATATTATTTACTTGGGTTGGTTTTAGCTCAAGTGTTCATACTCTTGATCATAAACAATAGGTTTCTAGTAGCATATCAAGAAACGAAGCAAAGACATACTTTTGTTATTATACAGTCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGGTAAGTCTGGATCCATCTCAAGTTCTTCTCTTAGTTGATCCTATTATGAAGGCAAATAATCAAACCGAGCAACCACGAAGAGCGTAATCAGGTCTCCATCAAAACAAAATTACATGTGTTGTGCTGCATTAAAATGTAAAGATCTACCTTCTGGAGTACTGCTCGAGCGAAGGACGGCCTGATGGGTAGGCCATAGACACGAACTTGGGACTCTTCCATGCCGTCGAGCAAGGCTCTCTTGGCTACTGCCTCTGATGCGCAGTAGCATCTGTTTACACCAGGATGAAACCTGAATTTTTAGTGTTCAAATGTTAGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGGTGTTTAAGTCTGTTATGACTGTAACAAACACCACTTTTTTCTGAAGGCCTTGCCATTTGAGAACCCATAAAGGAATATGTTGCATCAGTGGATGAACACTGATGATAATATCTGGCTTATACTCCATTAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTAAGTAGCCTCATAAGATCAATTTTTCATGGTCAAGATTTCCAGCAAGATATTTGTTATTATTGTTATTTTTAATTTTTAATGATTGGGGTATCAATACCCTCTTTGCATTGCGATCATGGTTCACCCTTCAACATTTTCACATAGAGAGTTGAACTTGATATATTTGGAGGATATTGCCAAGCACATACCGAAGGTGATACGACTAAATTTTAGTTTTCTACATCCTCTACTTGGTTACTTGGTTATGTTGAGTGTGTACAAAATAATTAAAAACGAGTTCAAGATAAGGAATCAATCTAAAATGAGATTAAATATGAAACTAATGCAACAATGAGCTGAGCCAGCACATTCAAATATGTTAATGACAAGAGTATTGTCAAACAAGACAACGTGTACAAAAGTACATTGAAAAGATTACACAATTGTTCGAGTTTTTGGTTTTAGACATGGTTGTCTTCTCTTCAACGTATCGCTATGTTGTTTCTCTCTCATTTTGTACTAACTTGCAGGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGTATTGAGTTTGATAATATATTGATAAGATTAACGAGAATATTATATGTACTTTGCATAGTAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

mRNA sequence

ATGTCGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTATCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

Coding sequence (CDS)

ATGTCGTCAACATGTATGGGATGTTTGCCATCGGACCACGCTGGCAGGCGAGGTCGTGGATGTCCCGAACGATGTCGAAGACAGCTTCGGGTTGTGCTATCACAAGCACCCATCCATTTCTCCATCTGTTTCTCAAAACCTCTCACCTGCAAAAGAGGAAGAAAAGGAGATGTAATGGATGCCCAAGGCCAAAGAAAAATGTACCAATCAGCAAGTTTTGAGGGAGAAAAGCTCCCAAAGAATGATTTTAAACTGACCTTAACTGGGATCTTCCATTCAAAAGCTTCAAGAGAAGAGGCTAATGCTTTGTTTCTTCCACAAATAATAACAAGTTGCCCAATAGGCTTCTCATTTTTCGTATCAAAAAGGGACTCCGCAAGAGCTTTTGCTGTTTTCTTTACAGGACCCATTCCTTCACCTCCTCCCATGAGCAGCACTGCTGATAAGAAGTTAAAAGATCAGCAAGCATTAGTTGAAAATAGGGAATCAAATAGTAATTTGGACGCTAACCATGTTGGATGGCAGACCAGCTTCCACTTCCCTTCAAACAAGAAAAGCAGCAAAGAAGTTAGAAACCTCACTCAAGAAATAATGTTAAGTCTCCTAATAATATTTGGATACGATGGGAGGCGGCGATCGCAGCAAGATAGACGGAGTGAATCCACCGAGGAGAGGTACTATGAAATGCAACCTTCCATAGCTGAACATGCTTTACCATGA

Protein sequence

MSSTCMGCLPSDHAGRRGRGCPERCRRQLRVVLSQAPIHFSICFSKPLTCKRGRKGDVMDAQGQRKMYQSASFEGEKLPKNDFKLTLTGIFHSKASREEANALFLPQIITSCPIGFSFFVSKRDSARAFAVFFTGPIPSPPPMSSTADKKLKDQQALVENRESNSNLDANHVGWQTSFHFPSNKKSSKEVRNLTQEIMLSLLIIFGYDGRRRSQQDRRSESTEERYYEMQPSIAEHALP

Homology

[Close]

BLAST of CcUC11G211700 vs. ExPASy TrEMBL
Match: A0A0A9JD95 (Si660066d07 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 111 SCPIGFSFFVSKRDSARAFAVFFTGPIPSPPPMSSTA 148
           SCPIGF   +S  DS RAFAVF TGP+PSPPP+SSTA
Sbjct: 4   SCPIGFPSSLSNNDSPRAFAVFLTGPMPSPPPISSTA 40

The following BLAST results are available for this feature:

BLAST of CcUC11G211700 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC11G211700 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC11G211700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9JD95	3.3e-05	72.97	Si660066d07 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CcUC11G211700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G211700.1	CcUC11G211700.1	mRNA