CcUC09G177660.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGGTAATTACATATTCACTTACCCTTTTCCCCTGATTATTGCTCATTTTCTTTCTTTTGATTTTTTTCAGAGAGGACGAGTGTTTGCCAAACGACCCAGGTGCTTACTTTGTCTCACTCAAGTTTGCTTCTATATGGGTGATTTAGTATGTTAAAATAAGCCCCTTTGTGGTGGAGGGGCTTTGGATTTGGGTACTTGATGAGTTCCTCTCTTTTGCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGTGTGTGATTAACCTTTTTCGTTTTTTTTTTTTTTTGTTTTTTCTTGACATTTTTGTTGCTGAATTCTGAATTATGCCATCCTTATACTTGTTACTGTCCTGCTGTTGTTACAAATGGGAATGAAAACTTGAGCTTAAAAAGCTGTATGTAACCTGAAATTGATGATGTCTTGTTGTTGATTCAGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAAACGACCCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAAACGACCCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKERT Homology
BLAST of CcUC09G177660.1 vs. NCBI nr
Match: XP_038896612.1 (18S rRNA aminocarboxypropyltransferase [Benincasa hispida]) HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34 Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. NCBI nr
Match: XP_008453773.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo]) HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. NCBI nr
Match: XP_008453772.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]) HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. NCBI nr
Match: XP_011653126.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745814.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus]) HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33 Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. NCBI nr
Match: XP_031745815.1 (ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus]) HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33 Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06 Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 2.3e-05 Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 5.1e-05 Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy TrEMBL
Match: A0A0A0KXU5 (18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G031030 PE=3 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33 Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy TrEMBL
Match: A0A1S3BXV8 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy TrEMBL
Match: A0A1S3BX27 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy TrEMBL
Match: A0A6J1C5M7 (18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC111008482 PE=3 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33 Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31 Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related ) HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15 Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0
BLAST of CcUC09G177660.1 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related ) HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15 Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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