CcUC09G177660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G177660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	18S rRNA aminocarboxypropyltransferase
Location	CicolChr09: 23105846 .. 23106452 (+)
RNA-Seq Expression	CcUC09G177660
Synteny	CcUC09G177660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGGTAATTACATATTCACTTACCCTTTTCCCCTGATTATTGCTCATTTTCTTTCTTTTGATTTTTTTCAGAGAGGACGAGTGTTTGCCAAACGACCCAGGTGCTTACTTTGTCTCACTCAAGTTTGCTTCTATATGGGTGATTTAGTATGTTAAAATAAGCCCCTTTGTGGTGGAGGGGCTTTGGATTTGGGTACTTGATGAGTTCCTCTCTTTTGCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGTGTGTGATTAACCTTTTTCGTTTTTTTTTTTTTTTGTTTTTTCTTGACATTTTTGTTGCTGAATTCTGAATTATGCCATCCTTATACTTGTTACTGTCCTGCTGTTGTTACAAATGGGAATGAAAACTTGAGCTTAAAAAGCTGTATGTAACCTGAAATTGATGATGTCTTGTTGTTGATTCAGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA

mRNA sequence

ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAAACGACCCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA

Coding sequence (CDS)

ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAAACGACCCAGCCAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAAAAGAACGTACCTAA

Protein sequence

MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKERT

Homology

[Close]

BLAST of CcUC09G177660 vs. NCBI nr
Match: XP_038896612.1 (18S rRNA aminocarboxypropyltransferase [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLP DPANDEEPTSP IQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPIDPANDEEPTSPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. NCBI nr
Match: XP_008453773.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. NCBI nr
Match: XP_008453772.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. NCBI nr
Match: XP_011653126.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745814.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD K
Sbjct: 1  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. NCBI nr
Match: XP_031745815.1 (ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD K
Sbjct: 1  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4  NKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCT 63
          NK    KN  P+RG    GH        +     N E+   P ++LAMWDF  CD KRC+
Sbjct: 6  NKMHEPKNGRPQRG--ANGHSSRQNHRRMEMKYDNSEKMKFP-VKLAMWDFDHCDPKRCS 65

Query: 64 GRKLARFGLLK 75
          G+KL R GL+K
Sbjct: 66 GKKLERLGLIK 73

[Close]

BLAST of CcUC09G177660 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-05
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 42 PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK 75
          P +    LAMW+ G CD KRCTGRKLAR GL++
Sbjct: 53 PAALPCALAMWELGHCDPKRCTGRKLARLGLVR 85

[Close]

BLAST of CcUC09G177660 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-05
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 42 PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK 75
          P +    LAMW+ G CD +RCTGRKLAR GL++
Sbjct: 53 PAALPCTLAMWELGHCDPRRCTGRKLARLGLVR 85

[Close]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL
Match: A0A0A0KXU5 (18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G031030 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
           MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD K
Sbjct: 94  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 153

Query: 61  RCTGRKLARFGLLKE 76
           RCTGRKLARFGLLKE
Sbjct: 154 RCTGRKLARFGLLKE 168

[Close]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL
Match: A0A1S3BXV8 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL
Match: A0A1S3BX27 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL
Match: A0A6J1C5M7 (18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC111008482 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQSTRGHKFIGED+CLP DPAN+EEP  P IQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTK 60
          MSHNKPRRFKNHHPRRGQS+RGHKFIGEDECLP DP N+EE   P IQLAMWDFGQCD K
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]

BLAST of CcUC09G177660 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related )

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 10 KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKL 69
          K++  + G S+RG       EDE LP D   ++E   P +QLAMWDFGQCD KRCTGRKL
Sbjct: 5  KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70 ARFGLLKE 76
          ARF LLKE
Sbjct: 65 ARFNLLKE 72

[Close]

BLAST of CcUC09G177660 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related )

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 10 KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKL 69
          K++  + G S+RG       EDE LP D   ++E   P +QLAMWDFGQCD KRCTGRKL
Sbjct: 5  KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70 ARFGLLKE 76
          ARF LLKE
Sbjct: 65 ARFNLLKE 72

The following BLAST results are available for this feature:

BLAST of CcUC09G177660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896612.1	1.0e-34	94.67	18S rRNA aminocarboxypropyltransferase [Benincasa hispida]	[more]
XP_008453773.1	4.2e-33	92.00	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo]	[more]
XP_008453772.1	4.2e-33	92.00	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]	[more]
XP_011653126.1	7.2e-33	90.67	ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745...	[more]
XP_031745815.1	7.2e-33	90.67	ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus]	[more]

BLAST of CcUC09G177660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q12094	3.5e-06	42.25	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q5HZH2	2.3e-05	60.61	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=...	[more]
Q9UJK0	5.1e-05	57.58	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1	[more]

BLAST of CcUC09G177660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXU5	1.6e-33	92.00	18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G03103...	[more]
A0A1S3BXV8	2.1e-33	92.00	18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 P...	[more]
A0A1S3BX27	2.1e-33	92.00	18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 P...	[more]
A0A6J1C5M7	3.5e-33	89.33	18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1J6L0	5.6e-31	86.67	18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830...	[more]

BLAST of CcUC09G177660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10070.2	1.9e-15	57.35	RNase L inhibitor protein-related	[more]
AT5G10070.1	1.9e-15	57.35	RNase L inhibitor protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007209	RNase L inhibitor RLI-like, possible metal-binding domain	PFAM	PF04068	RLI	coord: 48..74 e-value: 1.3E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3	PANTHER	PTHR20426	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G177660.1	CcUC09G177660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0106388	18S rRNA aminocarboxypropyltransferase activity
molecular_function	GO:1904047	S-adenosyl-L-methionine binding
molecular_function	GO:0016740	transferase activity