CcUC09G172070.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC09G172070.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 8403207 .. 8405947 (+)
Sequence length477
RNA-Seq ExpressionCcUC09G172070.1
SyntenyCcUC09G172070.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGAACTTCCGGGGCGCGAAGCTGCAGCATTTTGCTTGGAGGACGAACCCCATTCCATGGCCTCGGCGACCGCTCGTTGGCGTGCCTCAGCTGTTTCATCATTGTGAAGATAGTCGATGGGTTTGGATAGATTCATCAAATTGGAATCATCAACGGTTGATGGGACATCACCTAACGACGAAGACCTCGACGACTGTGTGGCTTCTGCTCCTAAGAAGCTGAGAGCAGTGACAACGTCACAGATCAACGGTCGGGTCGTCGCTTCCTCATGGAGGCACATGGCGGCGACCGCGATCGCTTGGTTCAGAGCCCTTATAGGAAAGTCTCCACCAAGAAGAGGATCTGCCAACTCCTTGAATCTAGCTGGTTCCTTGAATATTGGGCATGCCTACATATAGTTCAAAATAAAAAAAAAAAAATTTGACGGATTAGGAATACTATTTAGGTGCAGCCTAAGTTCCTTGCTCCCCTTCTTTTAGTGGTGCAGCATGGGTTATACAAGAGATGAGTGCAATCCGGCTGCACTTAAATTAGCTTTTTCCTCCCTAGATTTCTATTTTTAGCGTTCCTTCTATGAAACAAGTCATGTCAACGTTTCGTTAAGAGTATAAGATAGGAACAAAAGAAAGTAGACTCACCCAAGCGACCAAGTTTTGTTGTTTAGCTGGACGAGTGTTGTCGATGACTCTCTTGCCAGTGATGAGTTCCAACAAAACGACTCCAAAGCTATAGACATCAGATTTGAGAGTAAGTTGACCAGTTCTTTGATACTCAGGAGCACAATATCCATAGGTTCCCATAACTCTGGAGGAAACATGGGACTTGTCTCCAACAGGACCAAGCTTTGCAAGTCCAAAATCTGACAGCTTTGCATTGTAATCACCGTCCAATAGTATGTTTGATGATTTCAAGTCTCTATATATCACTGGTGGGTTGGCTTTGTTATGCAAGTATTCTAGCCCTTTTGCTGCTCCCAACCCTACTTTCATCCTTGTTCCCCAATCCAATGCCTTCCTTCCATATGGAAGATCTACAATACCAAATCAAAAACACAAACACAACTTGATGAGTCGATGTTTATTCGCTCGAAACTTCCATCGAGATTTTGATAATTAGTTGACTAATTTCACATGCATATTTGTTTGTTTTTGCAAAAATTGAGCAAAACGGAGTAATTGAAGTAACGATATCGAGAAAAATAGGTCAAAAAGTATTTGAAGCCAAAGGGATTTTTTTAGAAATTAGTGTAAAAATATAAAAAGTTTAGGACCGATTTGATAAGAGTTATGTTTTAGATATTTACCAAGTAGATGATCTTCTAGAGATCCTAAAGGCATGTACTCATAGACCAAGAGTCTTTGATCACCATCTGCACAATAGCCAATGAGATTGACAAGGTTTTGATGGTGTAAAAGGCTTAGCATCAAAACTTCCACAAGAAACTCTCTGTTCCCTTGCAATCCATTTCTGTCAAGCTGCTTCACTGCTACAACCTGTGACATGTCACACATTCATTAGTGTTACTACAAAATTACATTTCAATACTCGCCTGTCTTTGTTTGATAACTATTTTGTATTTGTATGTGTGTTATTTTAGTTCGTGGCTATTATAGTCTATAGGTTATAATAGTTTGTGTCTGAGGTGCATACTATTTTAGTCTAGGTGTATATTATTTTAGTTTGAGTCAACGAGGTTAAGAGAGGATGAGTAAAATATAGTAAATACGGTAACAAAAAAAAAAAAAAAAAGAGATTTGAAATAATAATACTGTAGTTAATTGTGGGTTATAATGACATTAAACCAAAATCTTAAACAGTTACTTTGAAGAAACAACAATATGGTTATCAAAGGAGTGTAAAGAAACCAGGTAAGGGGTGAACGTAGTTGTTACCTGATTAGTTTTATCGAGTTTTCCTTTGTAAACTCTCCCAAACCCTCCTTCACCAATGAGACATTCTTGACGGAAATTCTTTGTAGCAGTGGCCAATTCTCTGAAGGTGAAGGTTTGTGCTGCAATGTTATTCTTTTCCGCAATAATCTCATTCTCTTTCTCTTTCTCTTTCTCTGCTTCCCTTTGAACCTGATTTCCCTTTGGAATGTCTGTTCATTTATTGCAAATTAAAATACACACCATAGATATAATTTTACTAACAATCGTCAACTTATAAGTGATTTTGGGAAGTTGAATAAATATGTATCTATTTCTTGTTTCAACTTTTCGATTATGATTTTGAATTTGCTAGCTAATTATTTCATTAATGTGACACGTTGATGTTGACTATCAAGACAGGGTCTAACTCAATGTTTGCATTAGAGAATAAAATAGTTAATAAATAAAAAATTTGAAATACTATTTCTATCTCTATACTTTTAGTTTTTGTTTCTTTTGGTCCTTATACTTTTAGAATATTCATCTTGGTCCATATATTTTTAACTTTAGTTCATTTTGGTTCCATTTTCAGCTTTAGTTCATCTTGAGCCTTGTATTTTTTAAAAAGTGACTATTTTGGTCTCTCTATTTTCATTTTTAAGAGAACAAATGATATATTTTTTGAAAATTCAAGGACCAAAATGAACAAAAACCCAAAGTACAGAAATTAAAATGGAAGAAAACAAAAAGTACAAGGATCTTTTTAGTATTTAAGCCTTAAAAAAAAAGGCAAATGAAAATTTTTAAATTGATATATATATTTTTTTTTGGATATGGTTAAGCCTTACCGTCTAAAACAAGAGTAA

mRNA sequence

GAAGAAGAACTTCCGGGGCGCGAAGCTGCAGCATTTTGCTTGGAGGACGAACCCCATTCCATGGCCTCGGCGACCGCTCGTTGGCGTGCCTCAGCTTCGATGGGTTTGGATAGATTCATCAAATTGGAATCATCAACGGTTGATGGGACATCACCTAACGACGAAGACCTCGACGACTGTGTGGCTTCTGCTCCTAAGAAGCTGAGAGCAGTGACAACGTCACAGATCAACGGTCGGGTCGTCGCTTCCTCATGGAGGCACATGGCGGCGACCGCGATCGCTTGGTTCAGAGCCCTTATAGGAAAGTCTCCACCAAGAAGAGGATCTGCCAACTCCTTGAATCTAGCTGGCTTAGCATCAAAACTTCCACAAGAAACTCTCTGTTCCCTTGCAATCCATTTCTGTCAAGCTGCTTCACTGCTACAACCTGTGACATGTCACACATTCATTAGTCCTTACCGTCTAAAACAAGAGTAA

Coding sequence (CDS)

GAAGAAGAACTTCCGGGGCGCGAAGCTGCAGCATTTTGCTTGGAGGACGAACCCCATTCCATGGCCTCGGCGACCGCTCGTTGGCGTGCCTCAGCTTCGATGGGTTTGGATAGATTCATCAAATTGGAATCATCAACGGTTGATGGGACATCACCTAACGACGAAGACCTCGACGACTGTGTGGCTTCTGCTCCTAAGAAGCTGAGAGCAGTGACAACGTCACAGATCAACGGTCGGGTCGTCGCTTCCTCATGGAGGCACATGGCGGCGACCGCGATCGCTTGGTTCAGAGCCCTTATAGGAAAGTCTCCACCAAGAAGAGGATCTGCCAACTCCTTGAATCTAGCTGGCTTAGCATCAAAACTTCCACAAGAAACTCTCTGTTCCCTTGCAATCCATTTCTGTCAAGCTGCTTCACTGCTACAACCTGTGACATGTCACACATTCATTAGTCCTTACCGTCTAAAACAAGAGTAA

Protein sequence

EEELPGREAAAFCLEDEPHSMASATARWRASASMGLDRFIKLESSTVDGTSPNDEDLDDCVASAPKKLRAVTTSQINGRVVASSWRHMAATAIAWFRALIGKSPPRRGSANSLNLAGLASKLPQETLCSLAIHFCQAASLLQPVTCHTFISPYRLKQE
Homology
[Close]
BLAST of CcUC09G172070.1 vs. NCBI nr
Match: KAF7845530.1 (Serine/threonine-protein kinase PBS1 [Senna tora])

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-04
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 63  SAPKKLRAVTTSQINGRVVASSWRHMAATAIAWFRALIGKSPPRRGSANS 113
           S P+KLRA TTS ING   ASS RHMAA A AWF +L    P R GSA+S
Sbjct: 20  SVPRKLRAETTSDINGLADASSSRHMAAIATAWFSSLAPNFPLRLGSASS 69

The following BLAST results are available for this feature:
BLAST of CcUC09G172070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7845530.15.0e-0462.00Serine/threonine-protein kinase PBS1 [Senna tora][more]
BLAST of CcUC09G172070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G172070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G172070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC09G172070CcUC09G172070gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC09G172070.1-exonCcUC09G172070.1-exon-CicolChr09:8403207..8403302exon
CcUC09G172070.1-exonCcUC09G172070.1-exon-CicolChr09:8403324..8403576exon
CcUC09G172070.1-exonCcUC09G172070.1-exon-CicolChr09:8404626..8404729exon
CcUC09G172070.1-exonCcUC09G172070.1-exon-CicolChr09:8405924..8405947exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC09G172070.1-cdsCcUC09G172070.1-cds-CicolChr09:8403207..8403302CDS
CcUC09G172070.1-cdsCcUC09G172070.1-cds-CicolChr09:8403324..8403576CDS
CcUC09G172070.1-cdsCcUC09G172070.1-cds-CicolChr09:8404626..8404729CDS
CcUC09G172070.1-cdsCcUC09G172070.1-cds-CicolChr09:8405924..8405947CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC09G172070.1CcUC09G172070.1-proteinpolypeptide