CcUC09G168490.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC09G168490.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 4853425 .. 4853980 (-)
Sequence length	276
RNA-Seq Expression	CcUC09G168490.1
Synteny	CcUC09G168490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAAGTTTATTATTGGAAAACTACTCAAAACAATAAGATTAAAAAGGAAAAAGAGAAGGCAACACGGCCCCATATATATAAAGTTGTTAAAATTTTGTAAATATCACCCTGTTCTTATTGCTTGCTTGGCAATATTCTTGTGTAAAGGTGGGTGCTCTTCTCAACGATGTCACGACATATTAGGTTGTTGCTTCAATCGTCGCTTCTCCTTCTGCCATACATTTGGATCATGTGGTATCGTGATGCTTTCGAACAACGGTGGTAGACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGGTGATACTGTTGTTTCTAGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

mRNA sequence

ATGTCCAAAACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

Coding sequence (CDS)

ATGTCCAAAACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

Protein sequence

MSKTSRVLHKHLRLHHKSDDKLASFFGHTTVEKIKGDHEINLKSGGNIALSHGGIISQKVKGGVVSSGGKIGLKSNVNIVVSHQKSRGSIV

Homology

[Close]

BLAST of CcUC09G168490.1 vs. NCBI nr
Match: KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-08
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 24  SFFGHTTVEKIKG------DHEINLKSGGNIALSHGGIISQKVKGGVVSS--GGKIGLKS 83
           S FG   +++I+       DHEINLKSGGNIALSHGG IS K KGGV  S  GGK GLKS
Sbjct: 67  STFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSINGGKFGLKS 126

[Close]

BLAST of CcUC09G168490.1 vs. ExPASy TrEMBL
Match: A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 24  SFFGHTTVEKIKG------DHEINLKSGGNIALSHGGIISQKVKGGVVSS--GGKIGLKS 83
           S FG   +++I+       DHEINLKSGGNIALSHGG IS K KGGV  S  GGK GLKS
Sbjct: 91  STFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSINGGKFGLKS 150

The following BLAST results are available for this feature:

BLAST of CcUC09G168490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646351.1	7.3e-08	60.29	hypothetical protein Csa_023818, partial [Cucumis sativus]	[more]

BLAST of CcUC09G168490.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G168490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5J0	3.5e-08	60.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]

BLAST of CcUC09G168490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC09G168490	CcUC09G168490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC09G168490.1-exon	CcUC09G168490.1-exon-CicolChr09:4853425..4853593	exon
CcUC09G168490.1-exon	CcUC09G168490.1-exon-CicolChr09:4853613..4853710	exon
CcUC09G168490.1-exon	CcUC09G168490.1-exon-CicolChr09:4853972..4853980	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC09G168490.1-cds	CcUC09G168490.1-cds-CicolChr09:4853425..4853593	CDS
CcUC09G168490.1-cds	CcUC09G168490.1-cds-CicolChr09:4853613..4853710	CDS
CcUC09G168490.1-cds	CcUC09G168490.1-cds-CicolChr09:4853972..4853980	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC09G168490.1	CcUC09G168490.1-protein	polypeptide