CcUC09G168490 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC09G168490
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 4853425 .. 4853980 (-)
RNA-Seq ExpressionCcUC09G168490
SyntenyCcUC09G168490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAAGTTTATTATTGGAAAACTACTCAAAACAATAAGATTAAAAAGGAAAAAGAGAAGGCAACACGGCCCCATATATATAAAGTTGTTAAAATTTTGTAAATATCACCCTGTTCTTATTGCTTGCTTGGCAATATTCTTGTGTAAAGGTGGGTGCTCTTCTCAACGATGTCACGACATATTAGGTTGTTGCTTCAATCGTCGCTTCTCCTTCTGCCATACATTTGGATCATGTGGTATCGTGATGCTTTCGAACAACGGTGGTAGACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGGTGATACTGTTGTTTCTAGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

mRNA sequence

ATGTCCAAAACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

Coding sequence (CDS)

ATGTCCAAAACATCGAGAGTCCTACACAAGCACTTGAGATTGCACCATAAAAGCGACGACAAATTGGCTTCGTTTTTTGGTCACACAACTGTTGAGAAGATCAAAGGTGATCATGAAATTAATTTGAAGAGTGGTGGCAATATTGCTCTTTCTCATGGTGGAATAATTAGTCAAAAGGTCAAAGGTGGTGTTGTTTCAAGTGGTGGTAAAATTGGTTTAAAGAGCAATGTCAATATTGTTGTTTCTCATCAAAAGAGTAGAGGTAGTATTGTTTAA

Protein sequence

MSKTSRVLHKHLRLHHKSDDKLASFFGHTTVEKIKGDHEINLKSGGNIALSHGGIISQKVKGGVVSSGGKIGLKSNVNIVVSHQKSRGSIV
Homology
[Close]
BLAST of CcUC09G168490 vs. NCBI nr
Match: KAE8646351.1 (hypothetical protein Csa_023818, partial [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-08
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 24  SFFGHTTVEKIKG------DHEINLKSGGNIALSHGGIISQKVKGGVVSS--GGKIGLKS 83
           S FG   +++I+       DHEINLKSGGNIALSHGG IS K KGGV  S  GGK GLKS
Sbjct: 67  STFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSINGGKFGLKS 126

[Close]
BLAST of CcUC09G168490 vs. ExPASy TrEMBL
Match: A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 24  SFFGHTTVEKIKG------DHEINLKSGGNIALSHGGIISQKVKGGVVSS--GGKIGLKS 83
           S FG   +++I+       DHEINLKSGGNIALSHGG IS K KGGV  S  GGK GLKS
Sbjct: 91  STFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSINGGKFGLKS 150

The following BLAST results are available for this feature:
BLAST of CcUC09G168490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646351.17.3e-0860.29hypothetical protein Csa_023818, partial [Cucumis sativus][more]
BLAST of CcUC09G168490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC09G168490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5J03.5e-0860.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1[more]
BLAST of CcUC09G168490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC09G168490.1CcUC09G168490.1mRNA