CcUC08G161060.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC08G161060.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 28691449 .. 28695627 (+)
Sequence length348
RNA-Seq ExpressionCcUC08G161060.1
SyntenyCcUC08G161060.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATATTCTTTGGAGTGTTCCACTGTCTTCTCCAGCTAAGCAACAGCTCGCAGAGAGTGTGATACACGCGCTGTGGTGGCGTAGGGTGAGAGAGCGGAGGGAAGGCGGCGTTGTAATTGTAATGTAGAAACTGGAAGGATAGAAATAGAATAAATAGGAAAAATACAAGAGCATGCTATACCCCCCCCCCCACAATCTATAACTATAATCCCTCCATTCCACTCCACACTTTTCTATTCTATCACTTTTCTTTCTCTTCTATTTACATCCAACCATTCCTTCTCTATTTTAAATAATTATATTGTTGCCCAGAAAAAAAAAAAAAAAAAAACCTCATCTAGTGTCAACCATGGACAATTTGTACTTCAAATACAAGGTGATTTGTATTAAATCACCGATGAATCTAAAAGCTAAATATATGGTATTAGAACAAGTGGTTCAAGATGTCCTATGTTCAAACTTTTGCAATACCATTTCCTCTCCAATTAATATTGATTTTCATTTGATGGATCTTATACATGTTTCAAACGGTCTACAAGTGAGGGCAGTGTCAAATAATACAATATTAAATTAACAAAGTAAAGTAATAATTTAAGAACTTGCAAAACAAAGTAAAGTAACACATCTATGTGTTGTCTGTTGGATATATATAGTGAAAGAAAGTTAAAATTTGGTGAATATTTGAAAGTTTATGCATTGAAAGTCTGTTGGACATGTATCATTTTCCCTTAACAATTTGCCATAGAAACTCTAATGCTTAACTCAATTCATAGTGCTCTATACCAAACTTTTAGCGAAGACGACAAGGTCAGGATAGACAATTGGGTTGAATGGCCTAGTCGCCTCTTTTGATGGACTCTCTTCCAATCTTAGTTAAGCCTCTAATTTCATCTTCGGCAAATTTCTAGTTTGGATAGAGTTTAACTATTTTTATCCCAGTTTTATCCTCGATGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTTTTCTTTTCTATCAAAATTTCCACAACATATATATTTATTAGTAGCACTTGCAAAATAAACTAGATCAATTTTATTAATATACACAAGAATATTAATATATATATGTATATAAAGAGTAATGTAGGTGAGTCCAAACAAGATTGAAGATTTGATCAGCCTCACACTATCCCACATTTGTTAAGATATAATTTAATCGAAGGGTATTTTGAATAGTCCAAGAGTAAGGTAATAAGTAAAACTTTGACGGTGTGTGTTAAAAAGTGTGTCTACAAATTTAGAGTATCAAAAAGATGTTGGAATAATATTGAATGTGTTTTTTTGTAAGGTGGGGTGGGGGGAAACCGCGAGGATGTCATTGCCATTAGGTTTACGACAAATAAGATTACACAACCAATGCGACCAATATGCTTAAAAGCTGCATGCCCCATAGACAAAATTAAAATTTTAAAATTAAATAAATATATAAAATAAAATAAAATAAAAAACACCTTTTATTATATAAACAAAACTAAACAAAAAGACATTTTATGTAACCTCAACGCACATCTTACAAAATATTGCAAAAAAAGGGGAGAGATTTTTCTGTTTAGTGTTGGTCCTCATTTCGTACCAATTATCTTCAAATGTTTTCCTCAACAATGGGAGACATTGCCAGAATTTATTAACCATCTGACTCTACGTACTTCCAATACCGTCATGAAAACATAAAAAAGAATATAATCCCCCATTTCCAACTTTTTATTCTTTTTTTTTTTAAAAAAAAAAATATATACATACACATACAAACAAATTAATATCAAATTAAAAAAATGCAACTTATATAAATGATCATCAGACATTAATACTCATATTTTCCTTGAACATTTTCAAACAAAGATTAGATGTAGGCATGGAACTATTCGATTTCCTATTTAGCTAAGTCACTGTCAATTTTATTTATTTATTATCTAGTGGGTTCCACGTGAGCAGAAGATTTACATGGAGGGTTATTTCAAAATTGAGCTGAAAATTAAAAGTCCAACATGTTTGCATTTTTGCAAAGGAATTTAAGGCAGGGACCGTAAATGAAATATATATATATATATATATATATATATGGTAGATAATAATTGAATAAAGAAAAGTAATAAGCATGCGGCCAACGGGTGATGGCAATTAAAAAGGGTCAGAAGAATGGTAATTACATAGTTAATGCGAAGGAGAGTTTTGTCTGCAAATTGAGTGGCAACCATATCTTTTGCTATTATTATTATTATTATTATTATTATTACTATTACTATTTTTCTCTTTTGCATTTTGGGTTTAAAAGATGAGTAATAAAAACAGTGTACCAAATATTTTGGGCCCTTTGTTTCTTACTCAGAATTTGAAATATTTATGACAAAAATCTTACCTTAAAGGTTGGAGCAGCTGCCCACTTCTAATTGAATTTATTTGTGTGTCTTTGGTGGCATGTGCCACAGTTGTGGTTATTGGTCAATGCAATGTTATTTCAACTCTCTATACTAAAAGGGAAGATGGGGATAATATATGACTGCTAACATTAACAACGTCTTTCTCCATCATCACATGGGGACTATGGTAAACACTTCACTTTTTATTACCTTGTTTGGGACTTTGAGACTTACATCTATTACTTACTCTTACCACAATCCCCAATGGTGAAAATGACATCTCCTCAATTTAAAACGCGTTCGAGATGCTTTCTTTCCTATTCTTGTAATGGCAAATGACAGTTTTACTAAAATGACATGTCTCGTAAAGTTGCAAAACCATATATAAAAAAATATTCTCTTATGTTGTTTTGTTGTTAGAAGCAAATAATGCTTAAAATCTGGTTCACTAACAGTGTCTCACCAATCCTCTAACGCTATAGGCACCTCTGCAATTTGTATAATCTTATATTTTCTCTCTAATAGTAAACTAATCTCTCTATCTGCCAGTGGACGCAGTTAACACACTGTTAATAAACCACGTAAATTTACAGTGTACATATTTATTGTTTACTTTTTCTCACCTTCTTTATTTATCAATTTCATAATAGTTGTGCATGAAAGTAAACATTTTTCCATGAGAAGCTTGAGGCCATTGTTTTAAAGAATTAGTCCATATACTTTCCATGAATAAAAATGGTAATCTAATTATATGATATATATGATGTAAAAAGTAACATAGTAATTTGATCACAAACTTATGTAAAGGAACGATGACAAAATGTGTGTCGATTAGAAACCAAAGGGAACGTAGATTTGACCCATTGGGAGAATGAGGTTGTCTCCTAAAAAAGGATATATAGGGCACAATGAAAAGAAGAAGAGTTGTAGGTCGACTATGAAAAAAAGTTGGGGATTAGGGTGACATGAAGGATCAAAGTTTCATACTCGTTATTTGTAGGGTCATGTCCTAAAACCATTGGCCAAGGGGGTGTCACATATCGTCGGAGATTTCAAATAAGGACGAATAATCTTTGTTCTATATGCACGTTTGGACTTTCATTTTAACATATATGTATCCATATATATAAATTATTAGCTAGACTTGTTTAATAATTGAAGTATCACCATATGGCACATATTAAATCCGTGCTTTCGATTTCATATACATTGTACCTTGCATGAGGGATATACGTACATAATTTTTTTTTTTTTAGATATTTGTGAGTGTTTGGACCAACTTACGCACACATCGACTAATCTCACTGGATAACCTGCCTAACCCTACGACATTTGGGTGATGAGGAAACTCGATATTAAATCCTAGGTAGGTGGTCACTATGAATTGAACCCATGACCTCTTAGGTCTATGACTTTTTTTTATTTTTTTATTTTTTTTATTTATGTTTTCGCTACTACTAGGACAACTCAGGATGGTTATACGTACATAATTTATTCATTTATTATTTTTTTAATTTATCAAAAAATTATGCTTTTAAATATTTGAAAACTCGTTCCAAACATGCTTTTAAGTTACTATTTTTTTTAAAAAAATTTAATTAGGTAATAATTGGTCATGTAAGCATAGACAGCTTGATTAGGATTATAGTCAATTGTACTTTTAGAAAAAAGTGTCAATATAATATAGTGTCGAGTAAATTTCAATTTTAAATTAGACAATGCAAGCAAAAATCGAATTTTTTTATGAATTTATTAGATGGCACAATTAATCATTTTTTAAAAAAAGAATCTCAGTAA

mRNA sequence

ATGAAAAATATTCTTTGGAGTGTTCCACTGTCTTCTCCAGCTAAGCAACAGCTCGCAGAGAGTGTGATACACGCGCTGTGGTGGCGTAGGTGGGTTCCACGTGAGCAGAAGATTTACATGGAGGGTTATTTCAAAATTGAGCTGAAAATTAAAAGTCCAACATAAACCAAAGGGAACGTAGATTTGACCCATTGGGAGAATGAGGGTCATGTCCTAAAACCATTGGCCAAGGGGGTGTCACATATCGTAATAATTGGTCATGTAAGCATAGACAGCTTGATTAGGATTATAGTCAATTGTACTTTTAGAAAAAAGTGTCAATATAATATAGTGTCGAAATCTCAGTAA

Coding sequence (CDS)

ATGAAAAATATTCTTTGGAGTGTTCCACTGTCTTCTCCAGCTAAGCAACAGCTCGCAGAGAGTGTGATACACGCGCTGTGGTGGCGTAGGTGGGTTCCACGTGAGCAGAAGATTTACATGGAGGGTTATTTCAAAATTGAGCTGAAAATTAAAAGTCCAACATAA

Protein sequence

MKNILWSVPLSSPAKQQLAESVIHALWWRRWVPREQKIYMEGYFKIELKIKSPT
Homology
The following BLAST results are available for this feature:
BLAST of CcUC08G161060.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G161060.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G161060.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G161060.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC08G161060CcUC08G161060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28691449..28691538exon
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28693388..28693460exon
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28694666..28694706exon
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28694831..28694872exon
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28695433..28695523exon
CcUC08G161060.1-exonCcUC08G161060.1-exon-CicolChr08:28695617..28695627exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G161060.1-cdsCcUC08G161060.1-cds-CicolChr08:28691449..28691538CDS
CcUC08G161060.1-cdsCcUC08G161060.1-cds-CicolChr08:28693388..28693460CDS
CcUC08G161060.1-cdsCcUC08G161060.1-cds-CicolChr08:28694666..28694667CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G161060.1-three_prime_utrCcUC08G161060.1-three_prime_utr-CicolChr08:28694668..28694706three_prime_UTR
CcUC08G161060.1-three_prime_utrCcUC08G161060.1-three_prime_utr-CicolChr08:28694831..28694872three_prime_UTR
CcUC08G161060.1-three_prime_utrCcUC08G161060.1-three_prime_utr-CicolChr08:28695433..28695523three_prime_UTR
CcUC08G161060.1-three_prime_utrCcUC08G161060.1-three_prime_utr-CicolChr08:28695617..28695627three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC08G161060.1CcUC08G161060.1-proteinpolypeptide