CcUC08G155640.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC08G155640.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionVegetative storage protein 1
LocationCicolChr08: 24082559 .. 24087382 (-)
Sequence length1006
RNA-Seq ExpressionCcUC08G155640.1
SyntenyCcUC08G155640.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGTCGCCTAATAAGCCTTTTTGCTTTTGTGATAGTGAGCTGCCGAGCAAAAGGTGAGAATTCAGCATCAGTGTCACTCCAGTCACCTTGGAAATCATTGTCAGCTTCACCCCTCATTGTGCGCAAGACAAATGCTTTGGCCTTGCGACGCTGATTGTTGAAGAGACCCCTGATGGAAGTAACAAATCCATCTCCAGCCCCATCACTTGGCCGCTTAAGCCAGGTTATTGGATGTTGATCGGATTTCCCTGCCAGACCCCCTTCATTGTCACTTAAATTAAAGTCGCTGTCAGGAACAACCGTATTGTTGGGTTCCTTTTGACTATGTGCTTTGTCTTTGAACTTCTTACCCTGCGTCCGTGGTGTTTAAGATTTTAAATAACTGACTTAATAATCCAGAAACTCGAATTCAACTCGGTTCAGTTGAATGCAAAAACATAATACATTCAACTTTACTTCCTCTCTAAAAGCTTAGTTTGAGTTTTTATCATAACCAAGCAATGCTTTGGTGACTTGCAAGCTGAGAAATTCGAGGGTGAAGGTAACAAATGCGAACTAAAATGTTGGGAAGGAACAAGAGACGAGGTTGTTACTGGAATATAAAATGTGTGACATTAGTGTTATAATGCAGAGGATCAGATCTAAAAGTTCACCTGCATTCCTGTAACAGACTTTAGAACTCCCCAGATGATATGCTTTTTAACTCGAGAAAATAGCCTACGCCAAGTCCCAGTGAACTCAACACGATGGAATGTATCCATCAGCAGCTTCAGATCATTGACGACAAATCTTGATCCTTCGTAAGTTACTAACAACTCAACCTGTTTCAAAACTTCATTGAGTGATTTACGGAGGAATCTACAAAATACTGTTTCAACAATTAATTCAACAACAAAGCTTACAGACTGAGCTAGCTAACCTGGCTTATCTTGATATTGTGGAACTCCATCATCTTTCGAGGTCTGGATCTTTTCTCATCCTGGGGCTTTATCCCCTTCTTCTCTTCATGGGATGAGCGACCAGCTTTGATAGCTTTGGGATCTTTCAATTTATTACTACCTGATTCATCTGGTTGCTCAACAGAACCCAGTGGTCCACTTTTGGTAATGCTCTGCAAGACAAGCTCAGTAGCAACAGATTCGGCCACAGTCTCTTCCCATGACCTATCAAAGGAAGATGTTCTTCTTAACTCGGGAACTGAGCTGCTGCCAGAATTAGATTTAAGGTTTTGTGTCTTTGATGCCTGCATTGAAAGTATCCGAGACATCATGAGAAATGGAGCATGATCCAAAGGAGCAATATAGCTCATATTTGATCAGTTTCAGAGATCTCAACAGGAGAAACCAACGATCATAACTCCAGCAGTTCCATCCTTCTAAATGTAAAAGAAATCACCCAATCTTTCCTCTTCTTCTTTATTTACTATTATCAGAAAAGAAAACTGGCCCCATGAGCCATAAGTAAGGTTAATAAACTCACCTGAGCAGATTCTGCGTTGACAGATCCTTGACCACCGAGGGAGAAACCTAATTTGGAAAACATCTCCGACTCTTTTGTGTTAGATGCAGATACTTCATGAACTGAAGAACCTTTCCTTACACGCCTTGAACCTGCAGCCGTAGAAATCTTCCATGCTTCCTGTAGCAAAACGTGAGCCACTCAAAATCTATACTTGTGGGAAGCTAAAAAAATAGAAGGTTGCCTTCCACTGAGGAGTTGGCTCCCTTTAGAAACAAAGCTTTTCAACTAACCTGCCGTCTCTGTGAATCTTGTTCTTCCTCTGGAAAAAGGTACTCCCACATCATCCGATACATTGTCTCAGTCAAGTGAATTTTGAGGGGATAAATATCAACCTATAAGAGTAGAATAACACATTAAGCAAACAATCATGCACGAAGAATTAGGAAAAAGAAATTAAAGTGATCAAGATAATTCTGCTTCATGAATATTTTTGGTGAAAAGAAAAACTACAATATTATTTTTAACTGTTAAAGTCTAGTTCATGCAACACATGCACCGGATAAAGTCAGTATCAATTCCTTGTAGGACTTACTGTCTTAGAATTATTCGTCTGACAAATCCATTTCAGGACTTGCTCATCTTCAAGGTGCACTTTTATTTTTCTTTATTTATGTCGAGGAGCACAAGGAAGAATTCAAGATTAAGATAAAAACTAGGCTGTAAAATACACAAATTCACTGTGAAGGAAAAATAAAGAAGGGAAAAAAAAAAGGAAAAGAAAAGAAAAGAGAATGAATTGCTGCAACCCATCCACACCCCCTATGCAACTATAGTTCATTATATGATCTTCCATAAAGCTAATGGATCATAGACTCGACCTCCCATCTGATAACTGGTTTCCAAAGACAAGAAAAGAAAAAATAAAGACCTTCTTGTTCACCCAAGTTAAATTATGAACAAAAGCTGAAAAGTTCTTATAGTTAGCACTGTGAAATATCTAAATTGACAATGCCATTAAACCAAACATTTCCTTATCAGTTAATAATTCAAAGAATTTTTGGTCCTCGAACTACTGTTCCCTATGGAAGAAATGCACACTATAGCAATTTTTTACTAAATAATACAAATATCTATTACTAAAAAATTTGGAGAAAACAAGGGCACTAACCTGGAACATTTCAAGGAGTGAATTTCCATCTCTAGGAGCTCCCTGTTTTGCATCCACCCGAAGCATGACTAATCTGCAGCCATTAAAGTAGATGCTGTAACCGTCTGAAAACCATATGAAGCAATTAATACCCAAATTTCACAAGGAAAAACAGGAAGCTCATTTTCAAAGGGGAATTATGCCATGTTCAAATATCCAATAGATAACAGAATTGCCAATCCCACTCTTGCATTTAGACTTATTTCTTGAACCAAGTGCATCAGCCTTATGTTCAACCAGAGAGAATCAATAACCCATAAAGGTGCGAGTGAATCTGTTCCAGGTCTTAACATAAAAATGGTAATGCATATGGCCAAGCAATGATTATAAAGAACCACTCAAAATAAGTTAAAAAATTGTATGTTTTGATAAACAGATAATCTGTATACATCTGCCCAAGCAGCTATTAAAAGAAAGAAAAATAAAAATCTCACAAAGCACATATATGAAGAAAATAAAAAAGGGCTCAGATAACTTAAAATATTTGATACATAAATAATTTCTTTCTGATGCTTGTGTGCGTGTGTTATTTTATGAATAGATTTTCTTGTTCAGTGTGCCTAACCCCATTAACTCAGAGGAACCTACACCTGTCTCAAAGCTCAAATGCATCAAGGATTTTTCTTATTGAACTCACTCAAAGTTTCAAAACACGCAATCTCTGCATAGGTGTAAGACCGCATGATTTAGCTAACAGGGCCAACCCTTGGAGGCACACTTTACTATTTTACATATTTTGTGAGGTTGAAAATGATAATCTTGAATCACCAAAACGCATGGATTATATTAGAACTTCAGAAGGACATTAGCATGTGATCCAACGAAAACCAAATACTCAGGGGATAGGGATGTAACCTAGACAGATTTAGACTTTCACCAAGATGCAGGAGAAGCAAATAAAAAGAGCTGAAAAAGTACGTACTTTCCCCATTCTGATGGAGGATTCCATGCAGATAGAAGCATGTCAGACTTGGCATTGGGCAAGCAATTTCGTACAACAAAATACTTTGTGGTAAACTGAGCAATCCCAACATCTTTGTAATCACGGTCAAAATCATAAAACTGTAGTAACAGATGGCAACCACGTATTAACTACAGTAATCAACTACCACCGTAATTGTAGAATTATAAGTAATGAATAGTGTCCAAAAAAAAAAAGTTCAACTGACAAGCATTAGTTTACATAAGTCAAGCAACTTGACTGCAATTTAAAATAAATCGTATTAGCTTTTACTGCTGGGATTTCACGAATCCTTTCATCCTGGTTAATCTGTAAAAATTGAACAATCAAACAACCGTGATATTTCTTGTCTAAAAGGATAACGTGAAACATCTAAACCTAGAAACAATTATATACTAGTCCAGTTTTATTATTACAGAAACGTGAACATGTTTTATTAAACAGAAGCATACAAAAAGGAGATGAGATATCCCACTGCATCAACTAGTCTTCTAGTTGTAACTAACAAAAATTCTTGATAGTAGGGTTTTGAGATAGAAGCTTGCTGAAAGAACGCCTATATAGAGAAGAGCATTTTAAAATTCTTCTACTCTTCTCTACAGCAGTTTTTAAGTTTGGAAGGGGCAGCTGAATAGCGTTTTTGGTATGATTTGTGGGTTTCCTTTGAAATTAGAAGTCTTGATTCCCTCGTTTATTCAAAAGATTTCTACCTCCCACTTTGGTTTGGTCTTCGTCCCTTGGGTTGCTCAGTTTGCACTCTATTGGTTTCTTCAACATACTCAAGGATTATCGTTCTTGGTTGCTCGTTTGTCTCTTGTTTGGCAATAGCTTTTAAGTTCTTGATGATCTTTAGCAGTGGGATATTTATTCTGTTTTTTTTTGGGGGGTGTTAGATTTGCTACTATGGAGATGTTCACGTTGTATTTCATTTGTTTTACTCTGTTTCTCTCCCCTCTTTGAGGGTCTTTGTAACTTCAAGCATTAGAAATGAAGGGCATTTTTAGACTCTCACCATGTCATTTAGTTCAGCTTCTGCAAAAGATTTACCATCAACAAGCATGCTCCAGACTACTTTATCAATTTTCAAAGAAATCCGCATGGCATATGAAGGGCTTTTATTCTTCTCCTTCTCCATCAATCTTATCTGAGCAGCTTTCTGAAGAGCCATCCTCAACGATGCAGATGCCATCTTCC

mRNA sequence

TATGTCGCCTAATAAGCCTTTTTGCTTTTGTGATAGTGAGCTGCCGAGCAAAAGTGTCACTCCAGTCACCTTGGAAATCATTGTCAGCTTCACCCCTCATTGTGCGCAAGACAAATGCTTTGGCCTTGCGACGCTGATTGTTGAAGAGACCCCTGATGGAAGTAACAAATCCATCTCCAGCCCCATCACTTGGCCGCTTAAGCCAGGTCTGGATCTTTTCTCATCCTGGGGCTTTATCCCCTTCTTCTCTTCATGGGATGAGCGACCAGCTTTGATAGCTTTGGGATCTTTCAATTTATTACTACCTGATTCATCTGGTTGCTCAACAGAACCCAGTGGTCCACTTTTGGTAATGCTCTGCAAGACAAGCTCAGTAGCAACAGATTCGGCCACAGTCTCTTCCCATGACCTATCAAAGGAAGATGTTCTTCTTAACTCGGGAACTGAGCTGCTGCCAGAATTAGATTTAAGGTTTTGTGTCTTTGATGCCTGCATTGAAAAGATCTCAACAGGAGAAACCAACGATCATAACTCCAGCAGTTCCATCCTTCTAAATATACTTCATGAACTGAAGAACCTTTCCTTACACGCCTTGAACCTGCAGCCAAGGTTGCCTTCCACTGAGGAGTTGGCTCCCTTTAGAAACAAAGCTTTTCAACTAACCTGCCGTCTCTGTGAATCTTGTTCTTCCTCTGGAAAAAGGTACTCCCACATCATCCGATACATTGTCTCAGTCAAATTTCTACCTCCCACTTTGGTTTGGTCTTCGTCCCTTGGGTTGCTCAGTTTGCACTCTATTGGTTTCTTCAACATACTCAAGGATTATCGTTCTTGGTTGCTCCTTCTGCAAAAGATTTACCATCAACAAGCATGCTCCAGACTACTTTATCAATTTTCAAAGAAATCCGCATGGCATATGAAGGGCTTTTATTCTTCTCCTTCTCCATCAATCTTATCTGAGCAGCTTTCTGAAGAGCCATCCTCAACGATGCAGATGCCATCTTCC

Coding sequence (CDS)

ATGTCGCCTAATAAGCCTTTTTGCTTTTGTGATAGTGAGCTGCCGAGCAAAAGTGTCACTCCAGTCACCTTGGAAATCATTGTCAGCTTCACCCCTCATTGTGCGCAAGACAAATGCTTTGGCCTTGCGACGCTGATTGTTGAAGAGACCCCTGATGGAAGTAACAAATCCATCTCCAGCCCCATCACTTGGCCGCTTAAGCCAGGTCTGGATCTTTTCTCATCCTGGGGCTTTATCCCCTTCTTCTCTTCATGGGATGAGCGACCAGCTTTGATAGCTTTGGGATCTTTCAATTTATTACTACCTGATTCATCTGGTTGCTCAACAGAACCCAGTGGTCCACTTTTGGTAATGCTCTGCAAGACAAGCTCAGTAGCAACAGATTCGGCCACAGTCTCTTCCCATGACCTATCAAAGGAAGATGTTCTTCTTAACTCGGGAACTGAGCTGCTGCCAGAATTAGATTTAAGGTTTTGTGTCTTTGATGCCTGCATTGAAAAGATCTCAACAGGAGAAACCAACGATCATAACTCCAGCAGTTCCATCCTTCTAAATATACTTCATGAACTGAAGAACCTTTCCTTACACGCCTTGAACCTGCAGCCAAGGTTGCCTTCCACTGAGGAGTTGGCTCCCTTTAGAAACAAAGCTTTTCAACTAACCTGCCGTCTCTGTGAATCTTGTTCTTCCTCTGGAAAAAGGTACTCCCACATCATCCGATACATTGTCTCAGTCAAATTTCTACCTCCCACTTTGGTTTGGTCTTCGTCCCTTGGGTTGCTCAGTTTGCACTCTATTGGTTTCTTCAACATACTCAAGGATTATCGTTCTTGGTTGCTCCTTCTGCAAAAGATTTACCATCAACAAGCATGCTCCAGACTACTTTATCAATTTTCAAAGAAATCCGCATGGCATATGAAGGGCTTTTATTCTTCTCCTTCTCCATCAATCTTATCTGAGCAGCTTTCTGAAGAGCCATCCTCAACGATGCAGATGCCATCTTCC

Protein sequence

MSPNKPFCFCDSELPSKSVTPVTLEIIVSFTPHCAQDKCFGLATLIVEETPDGSNKSISSPITWPLKPGLDLFSSWGFIPFFSSWDERPALIALGSFNLLLPDSSGCSTEPSGPLLVMLCKTSSVATDSATVSSHDLSKEDVLLNSGTELLPELDLRFCVFDACIEKISTGETNDHNSSSSILLNILHELKNLSLHALNLQPRLPSTEELAPFRNKAFQLTCRLCESCSSSGKRYSHIIRYIVSVKFLPPTLVWSSSLGLLSLHSIGFFNILKDYRSWLLLLQKIYHQQACSRLLYQFSKKSAWHMKGFYSSPSPSILSEQLSEEPSSTMQMPSS
Homology
[Close]
BLAST of CcUC08G155640.1 vs. NCBI nr
Match: GER37364.1 (vegetative storage protein 1 [Striga asiatica])

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-08
Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = 0 

Query: 1   MSPNKPFCFCDSELPSK------SVTPVT-LEIIVSFTPHCAQDKCFGLATLIVEETPDG 60
           ++P++P      ELP K      ++ PV+ ++ +   +PHCAQDK   LA L +EE+P G
Sbjct: 10  VAPDEPLGLGYGELPRKRRELSIALAPVSAVQFVFGLSPHCAQDKGLCLAALGIEESPYG 69

Query: 61  SNKSISSPITWPLKPGLDLFSSWGFIPFFSSWDERPALIALGSFNLLLPDSSGCSTEPSG 120
           S+++I S I  PL P                WD            L+ P S    T P  
Sbjct: 70  SHEAIPSSIRRPLWP--------------RDWD-----------LLISPLSRAPITWPH- 129

Query: 121 PLLVMLCKTSSVATDSATVSSHDLSKEDVLLNS 147
              + +  TSS+ATDSAT SSH LSKEDVLL+S
Sbjct: 130 ---LAVQGTSSLATDSATFSSHVLSKEDVLLSS 133

[Close]
BLAST of CcUC08G155640.1 vs. ExPASy TrEMBL
Match: A0A5A7PX74 (Vegetative storage protein 1 OS=Striga asiatica OX=4170 GN=STAS_13770 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = 0 

Query: 1   MSPNKPFCFCDSELPSK------SVTPVT-LEIIVSFTPHCAQDKCFGLATLIVEETPDG 60
           ++P++P      ELP K      ++ PV+ ++ +   +PHCAQDK   LA L +EE+P G
Sbjct: 10  VAPDEPLGLGYGELPRKRRELSIALAPVSAVQFVFGLSPHCAQDKGLCLAALGIEESPYG 69

Query: 61  SNKSISSPITWPLKPGLDLFSSWGFIPFFSSWDERPALIALGSFNLLLPDSSGCSTEPSG 120
           S+++I S I  PL P                WD            L+ P S    T P  
Sbjct: 70  SHEAIPSSIRRPLWP--------------RDWD-----------LLISPLSRAPITWPH- 129

Query: 121 PLLVMLCKTSSVATDSATVSSHDLSKEDVLLNS 147
              + +  TSS+ATDSAT SSH LSKEDVLL+S
Sbjct: 130 ---LAVQGTSSLATDSATFSSHVLSKEDVLLSS 133

The following BLAST results are available for this feature:
BLAST of CcUC08G155640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GER37364.14.1e-0837.25vegetative storage protein 1 [Striga asiatica][more]
BLAST of CcUC08G155640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G155640.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PX742.0e-0837.25Vegetative storage protein 1 OS=Striga asiatica OX=4170 GN=STAS_13770 PE=4 SV=1[more]
BLAST of CcUC08G155640.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC08G155640CcUC08G155640gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24082559..24082723exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24082948..24083050exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24085556..24085687exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24085764..24085813exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24086001..24086056exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24086128..24086421exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24087159..24087310exon
CcUC08G155640.1-exonCcUC08G155640.1-exon-CicolChr08:24087329..24087382exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24082559..24082723CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24082948..24083050CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24085556..24085687CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24085764..24085813CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24086001..24086056CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24086128..24086421CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24087159..24087310CDS
CcUC08G155640.1-cdsCcUC08G155640.1-cds-CicolChr08:24087329..24087381CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G155640.1-five_prime_utrCcUC08G155640.1-five_prime_utr-CicolChr08:24087382..24087382five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC08G155640.1CcUC08G155640.1-proteinpolypeptide