CcUC07G132720.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC07G132720.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr07: 4653698 .. 4654380 (+)
Sequence length	308
RNA-Seq Expression	CcUC07G132720.1
Synteny	CcUC07G132720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGGATGAACGAGCTAGAAGGTTAGGAAGAATGAGTAGCAACTGCGAATCCAGGAACGTGAGTAAGAATCAGGGAGTGCGAGCAAGAATCTTAGAGTATCATCTGAGAATTTATTTTGTTTGACATTATGCTTGTTGCAACTTCCTCATTGTCATTGTGATTGTCAGGTAAATCGACTAGAGCGGACACTACAAGAAAAATAGATTTCTATAACATAAGAGACATCAAATTAGGATGAAAATTGAAGAGAAAGGAAAAAAAAAGTGTCATAAATGACAAAAACACGCGTTTTGGCAAGAAAAAAAGCTATTTTCAAATTTTGCTTGATTTATAACCGTTTTTAAATGTCATTATTATAAATTTGATTTTTTAAATTGTATGGTCAATCAATTCTATTTAGTAATATAAAATAATATAAATCTCTTTTATTTTTTATTAATAAATATAATATGTCATAAATGATATAAAAGCATCCTTACACTACATTGGAAACCCTTGCACACTAAACACGACTTTCCCTCCTCACACAAGAAGACCCCGAACAGAAACCCTGTTTTCGGCCATCGTCCTCTGGGCCACTCTGGTCTCCGGCTGTCTGTCGTCGTGGTCCTCCGTGTAAGCGCCTGCTGTCTCCGATCTCCAGCCGTCGTCTTCCGCGCCAAATCTTGCAAAGAAACCATT

mRNA sequence

AAGAGGATGAACGAGCTAGAAGGTTAGGAAGAATGAGTAGCAACTGCGAATCCAGGAACGTGAGTAAGAATCAGGGAGTGCGAGCAAGAATCTTAGACATCCTTACACTACATTGGAAACCCTTGCACACTAAACACGACTTTCCCTCCTCACACAAGAAGACCCCGAACAGAAACCCTGTTTTCGGCCATCGTCCTCTGGGCCACTCTGGTCTCCGGCTGTCTGTCGTCGTGGTCCTCCGTGTAAGCGCCTGCTGTCTCCGATCTCCAGCCGTCGTCTTCCGCGCCAAATCTTGCAAAGAAACCATT

Coding sequence (CDS)

ATGAGTAGCAACTGCGAATCCAGGAACGTGAGTAAGAATCAGGGAGTGCGAGCAAGAATCTTAGACATCCTTACACTACATTGGAAACCCTTGCACACTAAACACGACTTTCCCTCCTCACACAAGAAGACCCCGAACAGAAACCCTGTTTTCGGCCATCGTCCTCTGGGCCACTCTGGTCTCCGGCTGTCTGTCGTCGTGGTCCTCCGTGTAAGCGCCTGCTGTCTCCGATCTCCAGCCGTCGTCTTCCGCGCCAAATCTTGCAAAGAAACCATT

Protein sequence

MSSNCESRNVSKNQGVRARILDILTLHWKPLHTKHDFPSSHKKTPNRNPVFGHRPLGHSGLRLSVVVVLRVSACCLRSPAVVFRAKSCKETI

Homology

The following BLAST results are available for this feature:

BLAST of CcUC07G132720.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC07G132720.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC07G132720.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC07G132720.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC07G132720	CcUC07G132720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G132720.1-exon	CcUC07G132720.1-exon-CicolChr07:4653698..4653794	exon
CcUC07G132720.1-exon	CcUC07G132720.1-exon-CicolChr07:4654170..4654380	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G132720.1-five_prime_utr	CcUC07G132720.1-five_prime_utr-CicolChr07:4653698..4653729	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G132720.1-cds	CcUC07G132720.1-cds-CicolChr07:4653730..4653794	CDS
CcUC07G132720.1-cds	CcUC07G132720.1-cds-CicolChr07:4654170..4654380	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC07G132720.1	CcUC07G132720.1-protein	polypeptide