CcUC05G095690.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G095690.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	CicolChr05: 19016337 .. 19019001 (-)
Sequence length	1434
RNA-Seq Expression	CcUC05G095690.1
Synteny	CcUC05G095690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAGAGGTCTCCAATTCACAAACTTGAGAGTGAGAGAAAGAATTGGGTTTTAGGAAGAAGAAAAGTTCCATCAGAAGTCCAAAAGAGGGAATAGATAAGACTGAACTCCAACCAGAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGACCTTATCGGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTCTGTTTCTATAATTTCTTGTGCTTTCTTTTTTGGGACTTGGCACTTTGATTGATTGTGATTCTTCCCCCTTGGAACGGTTTGGGATTAATGTTCTGTTTGAATTTGATTGTTAGGAAGGAAATAGACGCCTTATCCACAATTGGCTTGGGAATTTTAAGAGTTTGTAGAGATTTATACAGGCTTATTCTTAGGGAAGTCTGGACATCAATCTGGGGCTTATCTTGTATAACCTAATGCTTGGGTGTCAAGGAAACTAGTAGGATATTGATAGTAAGCTTTTTAGATGTATAAGAGAGAAGTATCTCAAATTTATATTATGTGGTTATTGGGGGAGATGCAGATTTTTTTAGTTTGCATTTAACTGTTATTGTGAGGTAGCCACATTGTGGTAGTCTCATTAAATAATTTGTTGAAAGTAAAGCATATTTTTGAAAAAGTGTATATTTTATCGGTCCAAATATAGTGTAGTGAGAAAGTTACCTGTTCTCATCTCAAACGTCTGTAGTTTGTTTCTCCATCCTCACCATTGTTGAACGCAGATATAAAAGTGCCATTTTTCCATTGTTCTTCTATGTGAAGTTTGAAATTTGTTTCAAAATAGCCCTTGTAGGTATTCGACATTAAAATTCAAAGTTAGAAAAGTTTGTATGCGTTTATGTGAACAAATCAAAATACATACATCGAAAAGAATAATAATAAAGACAAAGACACATGACTTAATTATGAACCATATTTGGTTTCTCCTTTCAAATTTACCCTCTCAATTTATTATTCTTTTGTTTGTGTTAAGATTTGTTCCTTCGAGAGCAACATATAAGTAGACACAAACTTTTTCGTCTATTAACTGAACGACACAAGCTTTCAAATGTTGTTCTGAAAAAAATAAATTTAATTTAAAAACTGATTACAGTGGAACTTGTAGAATTTATAGAAAACAGAATATAGCCACAGTTAAAAGAAATCTTTGTGTTTTGTAATTTTTCTTCCTTGTTCCCTTTCGTTTTCTCGTTTTAGTTATTATTGTTTCTTGAGAACTTCAGATCCTGCAGAACCTACTACTCAAATTGGAAGATGACTGTAGAGAATGATGACTTGCTAAAGATTTTCCCAATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAATGTTTTGTCAAAGGAAAATGGATGGGATTTATGTGCTAAGTTGTTTCATGAAACTAAGCCATGATTTGGTTGATGAACAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAACCTAATCCAAAAGTTCACCCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACTCTGTAATGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGGAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTACACAATACTGGCAAACACCTTATAAAGATAATCTCCTGGAATCAGGCAGTGAGAAAACTTTGAAGCATATTTGTTAGGAAGAGCTACATAATCTACCAGTTGAAGACAATGCGGTTTGAGAAATTTGGTTTACCAATTGACGATTTGGAAGCACAAATCATAGTTGGGTTGTTCCCAACACAGTAAAGAATAGTCGTAATAGAGGAGAAAAGAGACCTGCAAGGAAGGCCTAGTAGTTAGCTTCAGCCAAATGGGGATTATTATTAAGTCATCGCTTTACAATTTGAATACCCCTTACTGGAAAATGGCATGAGTCACTTAACAGTTTAACACCCAAAAAAACACTGTAATAGAAAAAACCTCTTAGAATTTTGTTGTTCCTCTACTAACTTTGATCTCTTGCTCCTTGTGTATTCTCAAAACAGTCTAGAATGTATATATTGATGCTACTCCAACTGGATATGCTTGAAGCTTCTACCTAATATAATGACAGGGATGCTCTCATAGCCGCTTCTTTTTCTTCTTTACCACTTTCTTTTTCTTCTGGGGAACTCCTTGACCCCTCTTGAAAATGGCCAAAAC

mRNA sequence

CAAGAGAGGTCTCCAATTCACAAACTTGAGAGTGAGAGAAAGAATTGGGTTTTAGGAAGAAGAAAAGTTCCATCAGAAGTCCAAAAGAGGGAATAGATAAGACTGAACTCCAACCAGAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGACCTTATCGGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAACCTAATCCAAAAGTTCACCCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACTCTGTAATGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGGAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTACACAATACTGGCAAACACCTTATAAAGATAATCTCCTGGAATCAGGCAGTGAGAAAACTTTGAAGCATATTTGTTAGGAAGAGCTACATAATCTACCAGTTGAAGACAATGCGGTTTGAGAAATTTGGTTTACCAATTGACGATTTGGAAGCACAAATCATAGTTGGGTTGTTCCCAACACAGTAAAGAATAGTCGTAATAGAGGAGAAAAGAGACCTGCAAGGAAGGCCTAGTAGTTAGCTTCAGCCAAATGGGGATTATTATTAAGTCATCGCTTTACAATTTGAATACCCCTTACTGGAAAATGGCATGAGTCACTTAACAGTTTAACACCCAAAAAAACACTGTAATAGAAAAAACCTCTTAGAATTTTGTTGTTCCTCTACTAACTTTGATCTCTTGCTCCTTGTGTATTCTCAAAACAGTCTAGAATGTATATATTGATGCTACTCCAACTGGATATGCTTGAAGCTTCTACCTAATATAATGACAGGGATGCTCTCATAGCCGCTTCTTTTTCTTCTTTACCACTTTCTTTTTCTTCTGGGGAACTCCTTGACCCCTCTTGAAAATGGCCAAAAC

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGACCTTATCGGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEEDIPY

Homology

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BLAST of CcUC05G095690.1 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 179/184 (97.28%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 60

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180

Query: 181 DIPY 185
           DIPY
Sbjct: 181 DIPY 183

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BLAST of CcUC05G095690.1 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 178/184 (96.74%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 108

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

Query: 181 DIPY 185
           DIPY
Sbjct: 229 DIPY 231

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BLAST of CcUC05G095690.1 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

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BLAST of CcUC05G095690.1 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 175/185 (94.59%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQ-AAAAQFQTLKSRDGSVALKPQQGP 60
           MASLSSFFSFLLPSKPPPPKPHQP I SSPSPAN  AAAAQ QTLKS+DGSV+LKPQQGP
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIVSSPSPANHAAAAAQCQTLKSKDGSVSLKPQQGP 60

Query: 61  NHSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 120
           NHSE LSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVLVDDNEPEERLLNRFRREVMRAGVIQ 120

Query: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180
           ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE
Sbjct: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180

Query: 181 EDIPY 185
           E+IPY
Sbjct: 181 ENIPY 185

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BLAST of CcUC05G095690.1 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 9.3e-87
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

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BLAST of CcUC05G095690.1 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 2   ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNH 61
           +SL +F S L PS    P    P   +  S ++Q  +    + K  + ++A K       
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKK------- 64

Query: 62  SETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 121
            E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQEC
Sbjct: 65  -EEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQEC 124

Query: 122 KRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE 179
           KRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD+PE
Sbjct: 125 KRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMPE 175

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 92  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 150
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 93  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.8e-89
Identity = 179/184 (97.28%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 60

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180

Query: 181 DIPY 185
           DIPY
Sbjct: 181 DIPY 183

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 178/184 (96.74%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 108

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

Query: 181 DIPY 185
           DIPY
Sbjct: 229 DIPY 231

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.5e-87
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.5e-87
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

[Close]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 166/184 (90.22%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSPANQ AAAQFQTLKSRDGSVAL PQQ P 
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQ-AAAQFQTLKSRDGSVALSPQQAPK 60

Query: 61  HSETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSE LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLP EE
Sbjct: 121 CKRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLP-EE 180

Query: 181 DIPY 185
            IPY
Sbjct: 181 GIPY 181

[Close]

BLAST of CcUC05G095690.1 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 93/179 (51.96%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHS 62
           SL+SF SF+ P K    KP  P   + PSP           ++S      +  ++  + +
Sbjct: 6   SLTSFISFISPFK-SQTKPTPPPNLTLPSPTISQRRRNDLAIES------MAVEETSSTA 65

Query: 63  ETLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 122
            +LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECK
Sbjct: 66  SSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 125

Query: 123 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLP 178
           RRR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P
Sbjct: 126 RRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP 177

[Close]

BLAST of CcUC05G095690.1 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 7.3e-21
Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSETLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 125

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEAD 180
           GV+QE +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  
Sbjct: 126 GVLQESRRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQ 181

Query: 181 DDNWDLPEEE-DIPY 185
           DD+W+LP E+ +IPY
Sbjct: 186 DDHWELPPEDIEIPY 181

[Close]

BLAST of CcUC05G095690.1 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-16
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSETLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 125

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           GV+QE +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 GVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of CcUC05G095690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042889.1	1.0e-88	97.28	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
XP_008450090.2	4.9e-88	96.74	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
AAL35983.1	9.3e-87	95.08	ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Pr...	[more]
XP_038900112.1	9.3e-87	94.59	30S ribosomal protein S21, chloroplastic [Benincasa hispida]	[more]
XP_004145671.1	9.3e-87	95.08	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypotheti...	[more]

BLAST of CcUC05G095690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	1.1e-34	51.40	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.7e-04	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	4.6e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]

BLAST of CcUC05G095690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C287	4.8e-89	97.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	2.4e-88	96.74	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
Q8VWX5	4.5e-87	95.08	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
A0A0A0LDL7	4.5e-87	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
A0A6J1J5C2	1.0e-78	90.22	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CcUC05G095690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	1.6e-39	51.96	Ribosomal protein S21 family protein	[more]
AT5G63300.1	7.3e-21	38.46	Ribosomal protein S21 family protein	[more]
AT5G63300.2	9.2e-16	40.52	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 102..111 score: 43.33 coord: 94..102 score: 42.59 coord: 114..124 score: 38.64 coord: 126..136 score: 37.88
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 91..148 e-value: 3.6E-13 score: 47.1
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 92..146 e-value: 3.3E-19 score: 68.4
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..184
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 90..146 score: 13.870123
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 105..143 e-value: 2.3E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..184
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G095690	CcUC05G095690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G095690.1-exon	CcUC05G095690.1-exon-CicolChr05:19016337..19017202	exon
CcUC05G095690.1-exon	CcUC05G095690.1-exon-CicolChr05:19018434..19019001	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G095690.1-three_prime_utr	CcUC05G095690.1-three_prime_utr-CicolChr05:19016337..19017090	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G095690.1-cds	CcUC05G095690.1-cds-CicolChr05:19017091..19017202	CDS
CcUC05G095690.1-cds	CcUC05G095690.1-cds-CicolChr05:19018434..19018876	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G095690.1-five_prime_utr	CcUC05G095690.1-five_prime_utr-CicolChr05:19018877..19019001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G095690.1	CcUC05G095690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome