CcUC04G074830.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC04G074830.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 30692685 .. 30693520 (-)
Sequence length	816
RNA-Seq Expression	CcUC04G074830.1
Synteny	CcUC04G074830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTGGTGTTCCTCGACACTACCATAGCAAGCTCAGTGCTTGAAGTGTCCTTTGAAAAACCACTCACCACTGACGGCGGCGGTGCTGAGCTCGCCGCCCCTGTTACAGTGACCATAGCTTCCGATGCAATGGTGGTGGCCTCCCATTCTTCCTCAGTCACAGTGCGAGATGTCGACGGCACAAAAGGGTCCCAGAAATCCCAAGTGGATGACGGCGGCGGCGGCGGCGGCGGAGGTAGTGCCGGGGAGGCTGTGATCGAAGTCCAGGTGTCGGAACTAGGACTCATGGGGATATGTGGAGGCGGAGGCGGAGGCAGAGGCGGAGTTCGTGGGGTTGGAGATGGAAGCACCGGCGGGAGGTGGTGGTGGTAGTTCTGCTGCTGCTGCTGTTGCTGAGGGCGGCGAATGTAGGTCTCTGCATTGGAAAACTGCCGGAGAGCGGCACCGGTGCCGCGAAGAGAACGAATGTACAAGCTGTGAGAAGCTGAAAAATCTTGCCTCGCCTTCACCAACTGTTTCATGTACCTCTTTCTTGCTTTGCACCTCGACACAGTTTCTTGTCTTTCTAATCTCGAGTAACAGCAACCCATAGCTTCTTTGGCCAAAATCTCAAGCAGAAAGAAACTTTTCAAGAACAGAACAAAACTCGGGCGGTTTTCTATTTCCGATCTTCCGCCGATCTCCACATTCCGATGAGGGTGGCTAAAATGGGAGATCTTCCATTGGTGGTGGTGGTGGTGGTGGTTCAGGACGCTGTCAAACTCGTGCTTAAAAAAGCTACTCTCTTTCTTCCTTGTTACTCGCTGGCAAAGCCGGTGCCTTTTTTCTCACTCTCG

mRNA sequence

TCTTTGGTGTTCCTCGACACTACCATAGCAAGCTCAGTGCTTGAAGTGTCCTTTGAAAAACCACTCACCACTGACGGCGGCGGTGCTGAGCTCGCCGCCCCTGTTACAGTGACCATAGCTTCCGATGCAATGGTGGTGGCCTCCCATTCTTCCTCAGTCACAGTGCGAGATGTCGACGGCACAAAAGGGTCCCAGAAATCCCAAGTGGATGACGGCGGCGGCGGCGGCGGCGGAGGTAGTGCCGGGGAGGCTGTGATCGAAGTCCAGGACTCATGGGGATATGTGGAGGCGGAGGCGGAGGCAGAGGCGGAGTTCGTGGGGTTGGAGATGGAAGCACCGGCGGGAGGTGGTGGTGGTAGTTCTGCTGCTGCTGCTGTTGCTGAGGGCGGCGAATGTAGGTCTCTGCATTGGAAAACTGCCGGAGAGCGGCACCGGTGCCGCGAAGAGAACGAATGTACAAGCTGTGAGAAGCTGAAAAATCTTGCCTCGCCTTCACCAACTGTTTCATGTACCTCTTTCTTGCTTTGCACCTCGACACAGTTTCTTGTCTTTCTAATCTCGACAACCCATAGCTTCTTTGGCCAAAATCTCAAGCAGAAAGAAACTTTTCAAGAACAGAACAAAACTCGGGCGGTTTTCTATTTCCGATCTTCCGCCGATCTCCACATTCCGATGAGGGTGGCTAAAATGGGAGATCTTCCATTGGTGGTGGTGGTGGTGGTGGTTCAGGACGCTGTCAAACTCGTGCTTAAAAAAGCTACTCTCTTTCTTCCTTGTTACTCGCTGGCAAAGCCGGTGCCTTTTTTCTCACTCTCG

Coding sequence (CDS)

TCTTTGGTGTTCCTCGACACTACCATAGCAAGCTCAGTGCTTGAAGTGTCCTTTGAAAAACCACTCACCACTGACGGCGGCGGTGCTGAGCTCGCCGCCCCTGTTACAGTGACCATAGCTTCCGATGCAATGGTGGTGGCCTCCCATTCTTCCTCAGTCACAGTGCGAGATGTCGACGGCACAAAAGGGTCCCAGAAATCCCAAGTGGATGACGGCGGCGGCGGCGGCGGCGGAGGTAGTGCCGGGGAGGCTGTGATCGAAGTCCAGGACTCATGGGGATATGTGGAGGCGGAGGCGGAGGCAGAGGCGGAGTTCGTGGGGTTGGAGATGGAAGCACCGGCGGGAGGTGGTGGTGGTAGTTCTGCTGCTGCTGCTGTTGCTGAGGGCGGCGAATGTAGGTCTCTGCATTGGAAAACTGCCGGAGAGCGGCACCGGTGCCGCGAAGAGAACGAATGTACAAGCTGTGAGAAGCTGAAAAATCTTGCCTCGCCTTCACCAACTGTTTCATGTACCTCTTTCTTGCTTTGCACCTCGACACAGTTTCTTGTCTTTCTAATCTCGACAACCCATAGCTTCTTTGGCCAAAATCTCAAGCAGAAAGAAACTTTTCAAGAACAGAACAAAACTCGGGCGGTTTTCTATTTCCGATCTTCCGCCGATCTCCACATTCCGATGAGGGTGGCTAAAATGGGAGATCTTCCATTGGTGGTGGTGGTGGTGGTGGTTCAGGACGCTGTCAAACTCGTGCTTAAAAAAGCTACTCTCTTTCTTCCTTGTTACTCGCTGGCAAAGCCGGTGCCTTTTTTCTCACTCTCG

Protein sequence

SLVFLDTTIASSVLEVSFEKPLTTDGGGAELAAPVTVTIASDAMVVASHSSSVTVRDVDGTKGSQKSQVDDGGGGGGGGSAGEAVIEVQDSWGYVEAEAEAEAEFVGLEMEAPAGGGGGSSAAAAVAEGGECRSLHWKTAGERHRCREENECTSCEKLKNLASPSPTVSCTSFLLCTSTQFLVFLISTTHSFFGQNLKQKETFQEQNKTRAVFYFRSSADLHIPMRVAKMGDLPLVVVVVVVQDAVKLVLKKATLFLPCYSLAKPVPFFSLS

Homology

The following BLAST results are available for this feature:

BLAST of CcUC04G074830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G074830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G074830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G074830.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC04G074830	CcUC04G074830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G074830.1-exon	CcUC04G074830.1-exon-CicolChr04:30692685..30692938	exon
CcUC04G074830.1-exon	CcUC04G074830.1-exon-CicolChr04:30692946..30693240	exon
CcUC04G074830.1-exon	CcUC04G074830.1-exon-CicolChr04:30693254..30693520	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G074830.1-cds	CcUC04G074830.1-cds-CicolChr04:30692685..30692938	CDS
CcUC04G074830.1-cds	CcUC04G074830.1-cds-CicolChr04:30692946..30693240	CDS
CcUC04G074830.1-cds	CcUC04G074830.1-cds-CicolChr04:30693254..30693520	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC04G074830.1	CcUC04G074830.1-protein	polypeptide