CcUC01G006750.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC01G006750.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-dependent RNA polymerase
Location	CicolChr01: 7166420 .. 7168245 (+)
Sequence length	1044
RNA-Seq Expression	CcUC01G006750.1
Synteny	CcUC01G006750.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAATGTTTATATTTATTTGTTCGTCTTTTTTTTATTATTAATTATTTGGTTATCTCTAAAAAAAAGTGTTTAATAAATTTACTAACTCTGAATTTTACGTCAAATAGTTCACTGAAATTAAAATATGCTTTATAAATTCTTAAACTTTTAATTTCATATTGGTTAAATACTTAAATATTAAAATGTAATTTTTCACAAATTTTTCACTGGTTGGTTCAAACAATATGAAATGAATAATCAAAGCAAATTATTTTAAACTAGGGTTAGATGTTTAAATGAATGTCTTTATCTTTTATATAGTTATCTAAAAAGAAAATGAATAATAAATTACATAGCTGGATTACTTGTTTAGTTAGTAAAATTAAAATATCAATATTAGTTTGAAAAAGTAATCATAATTAACTACTGAACTAAAATTAGTGAAATAATTAAAATATTAGTTTTAGATGAGTCACATTCAAAGAATATTTAATTTTTTTAGAAAAGAATATTTAATTTATAAATTATACTTATTTAACTAAAAATATATATATGATCTTAGATTAGCTCTGTTATATTATATTGAATTTCTTCAAATTGGGCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAAACTCCATCATCTTCTTCCTCTCAATTCTATTCCAAGGAATTTACTGGTTTCCGTTGGATTAGGGATGTTGATTTCACTCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGTTTGGAACTTTCTCCTCGACATCACCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGGTCCATTCATTCTCCAAAAAGGTTCTTCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACTCCACCCCAAGCCTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCTTAGTTCAAAATGGTTATCTTCCTGGACCAACAATAGATGATAAATTCTTTCGCCTAGTCGATTCAAGTGAAATTCATTCAGACTATGTCAAACATGCCCTAGAAAAATTGTTTCATTTGAAGGAATGTTGTTATGAACCACAAAAGTGGCTAAAGCACCAATATCTGTCATATTATAGCTCTAATCAGCTTCCATGGAAACTTAATATTTCATTGGATGATAGCATGGTCTGTGTGCATAGAGTTCAAATTACACCATCTAAAGTGTACTTTTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGATGAAATAGATAACTTTTTTCGGGTGTCTTTTGTTGATGAGGAATTGAATAAACTTTATTCTGTTGACTCCACGTACATCATCTATTGAAAATAGTGAAAGAACTAAAGTTTATGATAGAATACTGTCGGTGTTAAAAAATGGTATAATCATTGGTGATAAAAAGTTTGAGTTTTTGGCTTTCTCGACTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGTGGATGGGTGACTTTTGTCAGATAAGGAATGTGGCAAAATATGTTGCTTGACTTGGTCAATCCTTTGGCTCGTCTAGAAAAACTTTGTGTGTTGAAGAACATGAGTCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAGGTTATTCCTGATGTAGAAGTTAAAAGGAAGAAAATTATATATTGTTTCTTTGATGGGATTGGAAAAATATCTAAAACATTGGCTAAGAAGGTTGCTGAAAAATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATTCGATATGTTGGATACAAAGGCGTTGTTGCTATCGACCCAACGTTGAAAAAGAAATTGACATTATGA

mRNA sequence

ATGGTTAATGAATTTACTGGTTTCCGTTGGATTAGGGATGTTGATTTCACTCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGTTTGGAACTTTCTCCTCGACATCACCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGGTCCATTCATTCTCCAAAAAGGTTCTTCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACTCCACCCCAAGCCTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCTTAGTTCAAAATGGTTATCTTCCTGGACCAACAATAGATGATAAATTCTTTCGCCTAGTCGATTCAAGTGAAATTCATTCAGACTATGTCAAACATGCCCTAGAAAAATTGTTTCATTTGAAGGAATGTTGTTATGAACCACAAAAGTGGCTAAAGCACCAATATCTGTCATATTATAGCTCTAATCAGCTTCCATGGAAACTTAATATTTCATTGGATGATAGCATGGTCTGTGTGCATAGAGTTCAAATTACACCATCTAAAGTGTACTTTTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGATGAAATAGATAACTTTTTTCGGGTGTCTTTTGTTGATGAGGAATTGAATAAACTTTATTCTGTTGACTCCACAATACTGTCGGTGTTAAAAAATGGTATAATCATTGGTGATAAAAAGTTTGAGTTTTTGGCTTTCTCGACTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGTGGATGGAACATGAGTCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAGGTTATTCCTGATGTAGAAGTTAAAAGGAAGAAAATTATATATTGTTTCTTTGATGGGATTGGAAAAATATCTAAAACATTGGCTAAGAAGGTTGCTGAAAAATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATTCGATATGTTGGATACAAAGGCGTTGTTGCTATCGACCCAACGTTGAAAAAGAAATTGACATTATGA

Coding sequence (CDS)

ATGGTTAATGAATTTACTGGTTTCCGTTGGATTAGGGATGTTGATTTCACTCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGTTTGGAACTTTCTCCTCGACATCACCTTCCTTCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGGTCCATTCATTCTCCAAAAAGGTTCTTCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACTCCACCCCAAGCCTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCTTAGTTCAAAATGGTTATCTTCCTGGACCAACAATAGATGATAAATTCTTTCGCCTAGTCGATTCAAGTGAAATTCATTCAGACTATGTCAAACATGCCCTAGAAAAATTGTTTCATTTGAAGGAATGTTGTTATGAACCACAAAAGTGGCTAAAGCACCAATATCTGTCATATTATAGCTCTAATCAGCTTCCATGGAAACTTAATATTTCATTGGATGATAGCATGGTCTGTGTGCATAGAGTTCAAATTACACCATCTAAAGTGTACTTTTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGATGAAATAGATAACTTTTTTCGGGTGTCTTTTGTTGATGAGGAATTGAATAAACTTTATTCTGTTGACTCCACAATACTGTCGGTGTTAAAAAATGGTATAATCATTGGTGATAAAAAGTTTGAGTTTTTGGCTTTCTCGACTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGTGGATGGAACATGAGTCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAGGTTATTCCTGATGTAGAAGTTAAAAGGAAGAAAATTATATATTGTTTCTTTGATGGGATTGGAAAAATATCTAAAACATTGGCTAAGAAGGTTGCTGAAAAATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATTCGATATGTTGGATACAAAGGCGTTGTTGCTATCGACCCAACGTTGAAAAAGAAATTGACATTATGA

Protein sequence

MVNEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSSFSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVKHALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYFCGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVDSTILSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFASREWMEHESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYVGYKGVVAIDPTLKKKLTL

Homology

[Close]

BLAST of CcUC01G006750.1 vs. NCBI nr
Match: XP_038875555.1 (probable RNA-dependent RNA polymerase 1 [Benincasa hispida])

HSP 1 Score: 578.6 bits (1490), Expect = 3.7e-161
Identity = 294/390 (75.38%), Postives = 315/390 (80.77%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           NEF  FRWIRDVDFTPSSCIGQSFALCLELSP HHLP FFQ LVGYKETY PFILQ GSS
Sbjct: 197 NEFC-FRWIRDVDFTPSSCIGQSFALCLELSPGHHLPPFFQNLVGYKETYAPFILQTGSS 256

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
           FSSISNLVPIITPP+ FDISYK LFKINALVQ+GYLPGPT+DD+FFRLVDSS    DYV+
Sbjct: 257 FSSISNLVPIITPPRGFDISYKTLFKINALVQHGYLPGPTLDDEFFRLVDSSRFRPDYVE 316

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEK+F+LKECCYEPQKWLKH YLS+Y+SNQLPWK NISLDD +V VHRVQITPSKVYF
Sbjct: 317 HALEKMFNLKECCYEPQKWLKHHYLSFYTSNQLPWKPNISLDDGLVYVHRVQITPSKVYF 376

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
            GPEANLSNRVVRRFID+IDNF RVSFVDE+L+KL+S+D                   IL
Sbjct: 377 RGPEANLSNRVVRRFIDDIDNFLRVSFVDEDLDKLHSIDLAPRSSSAGNSERTRVYDRIL 436

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWMEH----------- 302
           SVL+NGI+IGDKKFEFLAFS SQLRENSFWMFAS         REWM             
Sbjct: 437 SVLRNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFREIRNVAKYA 496

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHE EVIPDVEV+RKK  YCF DGIGKISKTLA+KVAEKCGLI
Sbjct: 497 ARLGQSFGSSRKTLCVEEHEFEVIPDVEVERKKTKYCFSDGIGKISKTLAEKVAEKCGLI 556

[Close]

BLAST of CcUC01G006750.1 vs. NCBI nr
Match: XP_031741021.1 (probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 578.2 bits (1489), Expect = 4.8e-161
Identity = 292/390 (74.87%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY+ 
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYID 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVV 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           SVLKNGI+IG+KKFEFLAFS SQLRENSFWMFAS         REWM    H        
Sbjct: 441 SVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK IIYCF DGIGKISKTLAKKVAEKCGLI
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLI 560

[Close]

BLAST of CcUC01G006750.1 vs. NCBI nr
Match: KAE8648600.1 (hypothetical protein Csa_007966 [Cucumis sativus])

HSP 1 Score: 578.2 bits (1489), Expect = 4.8e-161
Identity = 292/390 (74.87%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY+ 
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYID 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVV 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           SVLKNGI+IG+KKFEFLAFS SQLRENSFWMFAS         REWM    H        
Sbjct: 441 SVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK IIYCF DGIGKISKTLAKKVAEKCGLI
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLI 560

[Close]

BLAST of CcUC01G006750.1 vs. NCBI nr
Match: AOW73471.1 (RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus])

HSP 1 Score: 577.0 bits (1486), Expect = 1.1e-160
Identity = 291/390 (74.62%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY+ 
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYID 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVV 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           SVLKNGI+IG+KKFEFLAFS SQL+ENSFWMFAS         REWM    H        
Sbjct: 441 SVLKNGIVIGNKKFEFLAFSASQLKENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK IIYCF DGIGKISKTLAKKVAEKCGLI
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLI 560

[Close]

BLAST of CcUC01G006750.1 vs. NCBI nr
Match: ALM88235.1 (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 572.4 bits (1474), Expect = 2.7e-159
Identity = 287/390 (73.59%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY++
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIE 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSQRTRVYDRVI 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           S+LKNGI+IG+KKFEFLAFS SQLRENSFWMFAS         REWM    H        
Sbjct: 441 SILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK I+YCF DGIGKISKTLAKKVAEKCGL 
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLT 560

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 7.9e-98
Identity = 193/383 (50.39%), Postives = 242/383 (63.19%), Query Frame = 0


Query: 9   RWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKE-TYGPFILQKGSSFSSIS 68
           +WIR  DFT SSCIGQS A CLEL    ++P F +    Y E     F+++ GSS+SS +
Sbjct: 204 QWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNA 263

Query: 69  N-LVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVKHALE 128
           N LVP++ PP  F + ++ILFK+N LVQN  L GP +D  F+RL++  +     + H LE
Sbjct: 264 NTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLE 323

Query: 129 KLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYFCGPE 188
           KLFHL ECCYEP  WL+ +Y  + S  +LP    ISLDD +V ++RVQ+TP++VYF GPE
Sbjct: 324 KLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPE 383

Query: 189 ANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD--------------STILSVLKNGI 248
            N+SNRV+R +   I+NF RVSFVDE+L K+ S+D                I SVL++GI
Sbjct: 384 VNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGI 443

Query: 249 IIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH--------------- 308
           +IGDKKFEFLAFS+SQLRENS WMFA          R WM   +H               
Sbjct: 444 VIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSF 503

Query: 309 -ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLINHTPSAF 348
             SR+TL V   EIEVIPDVE+      Y F DGIGKIS   A+KVA KCGL   +PSAF
Sbjct: 504 SSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAF 563

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 5.7e-56
Identity = 144/391 (36.83%), Postives = 201/391 (51.41%), Query Frame = 0


Query: 8   FRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSSFSSIS 67
           F WIR  DF+ S  IG S   CLE+     +   F  L  Y+E         G +F+S +
Sbjct: 217 FMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAA 276

Query: 68  NLVPIITPP-QAFDISYKILFKINALVQNGYLP-GPTIDDKFFRLVDSSEIHSDYVKHAL 127
            +VP++       +  Y+ILF++NALV    +      D +  +++    + +  V   L
Sbjct: 277 QIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--IL 336

Query: 128 EKLFHLKECCYEPQKWLKHQYLSYYSS-NQLPWKLNISL-DDSMVCVHRVQITPSKVYFC 187
           +KL      CY+P  ++K Q  S        P      L + +++   R  +TPSK+Y  
Sbjct: 337 KKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLL 396

Query: 188 GPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKL----YSVDS---------------TI 247
           GPE   +N VV+ F + + +F RV+FV+E+ +KL     SV+S                +
Sbjct: 397 GPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRV 456

Query: 248 LSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWME----------- 307
           LS+L  GI +G K+FEFLAFS SQLR NS WMFAS         REWM            
Sbjct: 457 LSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKC 516

Query: 308 --------HESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGL 348
                     SR+TL V   ++E IPD+EV      YCF DGIGKIS   AK+VA+KCGL
Sbjct: 517 AARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL 576

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.6e-52
Identity = 135/396 (34.09%), Postives = 198/396 (50.00%), Query Frame = 0


Query: 8   FRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSSFSSIS 67
           F W+R +DFTP+   G+   L L+L     +    ++L  +    G   +       + S
Sbjct: 215 FSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL-PFSGNLGELTMNSMDGVGASS 274

Query: 68  NLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVKHALEK 127
           N+VP++  P+ + + Y++LF++N+L+  G +    ++   F+ +   E+  D  +   EK
Sbjct: 275 NVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKAL--QELPVDVSRRIFEK 334

Query: 128 LFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDD--------SMVCVHRVQITPSK 187
           +  L+  CY P ++++ +  S   S+      N+ L +         ++  +RV ITPSK
Sbjct: 335 MHKLESTCYGPLQFIQQEAYSMKRSH------NVLLSNEGEGEGERKLMKCYRVNITPSK 394

Query: 188 VYFCGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYS-------------------V 247
           ++  GPE  ++N VV+       +F RV+FVDE+ +KL S                   +
Sbjct: 395 IFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGL 454

Query: 248 DSTILSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWMEH------ 307
              ILS+LK G  IG K FEFLAFS SQLR NS WMFAS         R WM H      
Sbjct: 455 YYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRS 514

Query: 308 -------------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAE 348
                         SR+T  V   ++EVIPD+E+      Y F DGIGKIS   AK+VA 
Sbjct: 515 VSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAH 574

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 7.5e-40
Identity = 100/215 (46.51%), Postives = 124/215 (57.67%), Query Frame = 0


Query: 178 SKVYFCGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD---------------- 237
           S VYF GPE N+SNRVVR F  +I+NF R+SFVDE+  KL + D                
Sbjct: 7   STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66

Query: 238 -STILSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFASRE---------WME------- 297
              +LSVL +GI IG K FEFLAFS+SQLR+NS WMFASR+         WM        
Sbjct: 67  YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126

Query: 298 ------------HESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAE 348
                         S +TL V+++E+E I D++   + +   F DGIGKIS   A +VA 
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHV---FSDGIGKISSAFANEVAM 186

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 112/393 (28.50%), Postives = 180/393 (45.80%), Query Frame = 0


Query: 10  WIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGY---------KETYGPFILQKG 69
           WIR  DFT    IG+  +  + +SPR+   +  +T + Y         +  + P I  + 
Sbjct: 250 WIRTTDFTQVGAIGRCHSYRVLISPRYE--NKLRTALDYFRMRRVQEERVRWPPRIRNEP 309

Query: 70  SSFSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDY 129
                +S+    I   +   IS++I+F +N+++  G      + ++FF L+ +     D 
Sbjct: 310 CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP--KDV 369

Query: 130 VKHALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKV 189
              +L+ L   K   ++  K LK        + +L      S D S   + R+ ITP++ 
Sbjct: 370 NIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISE--IRRLVITPTRA 429

Query: 190 YFCGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYS--------------------- 249
           Y   PE  LSNRV+RR+    + F RV+F+DE +  + S                     
Sbjct: 430 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 489

Query: 250 ---VDSTILSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---- 309
              V   + S+L +G  +  +K+ FLAFS +QLR+ S W FA          + WM    
Sbjct: 490 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 549

Query: 310 -----EHESRKTLC---------VEEHEIEV-IPDVEVKRKKIIYCFFDGIGKISKTLAK 341
                +  +R  LC         V  HE++  +PD+E    +  Y F DGIG I+  LA 
Sbjct: 550 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLAD 609

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL
Match: A0A0A0KRH3 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 5.2e-161
Identity = 291/390 (74.62%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY+ 
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYID 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVV 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           SVLKNGI+IG+KKFEFLAFS SQLRENSFWMFAS         REWM    H        
Sbjct: 441 SVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK I+YCF DGIGKISKTLAKKVAEKCGLI
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLI 560

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL
Match: A0A1D8RK46 (RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=2 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 5.2e-161
Identity = 291/390 (74.62%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY+ 
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYID 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVV 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           SVLKNGI+IG+KKFEFLAFS SQL+ENSFWMFAS         REWM    H        
Sbjct: 441 SVLKNGIVIGNKKFEFLAFSASQLKENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK IIYCF DGIGKISKTLAKKVAEKCGLI
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLI 560

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL
Match: A0A0S1YCZ4 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.3e-159
Identity = 287/390 (73.59%), Postives = 314/390 (80.51%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           N+ T FRWIRDVDFTPSSCIGQSF +CL+LSP HHLP FFQTLVGYK TY PFIL KGSS
Sbjct: 201 NKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSS 260

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
             S SNLVPIITPPQAFDISYKILFKINAL+Q+GYL GPT+DD+FFRLVDSS  HSDY++
Sbjct: 261 LVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIE 320

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY+SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 321 HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYF 380

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 381 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSQRTRVYDRVI 440

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH-------- 302
           S+LKNGI+IG+KKFEFLAFS SQLRENSFWMFAS         REWM    H        
Sbjct: 441 SILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYA 500

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCVEEHEIEVIPDVEV+RK I+YCF DGIGKISKTLAKKVAEKCGL 
Sbjct: 501 ARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLT 560

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL
Match: A0A5D3E365 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00630 PE=3 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.2e-159
Identity = 287/391 (73.40%), Postives = 311/391 (79.54%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           NE   FRWIRDVDFTPSSCIGQSF LCL+ SP HHLP FFQTLVGYK TY PFIL+KGSS
Sbjct: 139 NESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYAPFILRKGSS 198

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
           F S SNLVPIITPPQAFDISYKILFKINAL+Q GYL GPT+DD+FFRLVDSS  H DY++
Sbjct: 199 FVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIE 258

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLS+Y SNQLPWK NISLDD +V VHRVQITP KVYF
Sbjct: 259 HALEKLFNLKECCYKPQKWLKDQYLSFYVSNQLPWKPNISLDDGLVYVHRVQITPLKVYF 318

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD------------------STI 242
           CGPEANLSNRVVRRFI +IDNF RVSFVDEEL+KL+S+D                    +
Sbjct: 319 CGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSTKRTRVYDRV 378

Query: 243 LSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWMEH---------- 302
           +SVLKNGI+IGDKKFEFLAFS SQLRENSFWMFAS         REWM            
Sbjct: 379 VSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKY 438

Query: 303 ---------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGL 348
                     SRKTLCVEEHEIEVIPDVEV+RK ++YCF DGIGKISKTLAKKVAEKCGL
Sbjct: 439 ATRLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNVMYCFSDGIGKISKTLAKKVAEKCGL 498

[Close]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL
Match: A0A5A7TYE3 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00320 PE=3 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 4.9e-159
Identity = 286/390 (73.33%), Postives = 310/390 (79.49%), Query Frame = 0


Query: 3   NEFTGFRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSS 62
           NE   FRWIRDVDFTPSSCIGQSF LCL+ SP HHLP FFQTLVGYK TY PFIL+KGSS
Sbjct: 139 NESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSS 198

Query: 63  FSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVK 122
           F S SNLVPIITPPQAFDISYKILFKINAL+Q GYL GPT+DD+FFRLVDSS  H DY++
Sbjct: 199 FVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIE 258

Query: 123 HALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYF 182
           HALEKLF+LKECCY+PQKWLK QYLSYY SNQLPWK N+SLDD +V VHRVQITP KVYF
Sbjct: 259 HALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYF 318

Query: 183 CGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD-----------------STIL 242
           CGPEANLSNRVVRRFID+IDNF RVSFVDEEL+KL+S+D                   ++
Sbjct: 319 CGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVV 378

Query: 243 SVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWMEH----------- 302
           SVLKNGI+IGDKKFEFLAFS SQLRENSFWMFAS         REWM             
Sbjct: 379 SVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYA 438

Query: 303 --------ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLI 348
                    SRKTLCV+EHEIEVIPDVEV+RK I+YCF DGIGKISKTLAKKVA+KCGL 
Sbjct: 439 ARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLT 498

[Close]

BLAST of CcUC01G006750.1 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 358.6 bits (919), Expect = 5.6e-99
Identity = 193/383 (50.39%), Postives = 242/383 (63.19%), Query Frame = 0


Query: 9   RWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKE-TYGPFILQKGSSFSSIS 68
           +WIR  DFT SSCIGQS A CLEL    ++P F +    Y E     F+++ GSS+SS +
Sbjct: 204 QWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNA 263

Query: 69  N-LVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDYVKHALE 128
           N LVP++ PP  F + ++ILFK+N LVQN  L GP +D  F+RL++  +     + H LE
Sbjct: 264 NTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLE 323

Query: 129 KLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKVYFCGPE 188
           KLFHL ECCYEP  WL+ +Y  + S  +LP    ISLDD +V ++RVQ+TP++VYF GPE
Sbjct: 324 KLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPE 383

Query: 189 ANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYSVD--------------STILSVLKNGI 248
            N+SNRV+R +   I+NF RVSFVDE+L K+ S+D                I SVL++GI
Sbjct: 384 VNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGI 443

Query: 249 IIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---EH--------------- 308
           +IGDKKFEFLAFS+SQLRENS WMFA          R WM   +H               
Sbjct: 444 VIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSF 503

Query: 309 -ESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGLINHTPSAF 348
             SR+TL V   EIEVIPDVE+      Y F DGIGKIS   A+KVA KCGL   +PSAF
Sbjct: 504 SSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAF 563

[Close]

BLAST of CcUC01G006750.1 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 219.5 bits (558), Expect = 4.1e-57
Identity = 144/391 (36.83%), Postives = 201/391 (51.41%), Query Frame = 0


Query: 8   FRWIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGYKETYGPFILQKGSSFSSIS 67
           F WIR  DF+ S  IG S   CLE+     +   F  L  Y+E         G +F+S +
Sbjct: 217 FMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAA 276

Query: 68  NLVPIITPP-QAFDISYKILFKINALVQNGYLP-GPTIDDKFFRLVDSSEIHSDYVKHAL 127
            +VP++       +  Y+ILF++NALV    +      D +  +++    + +  V   L
Sbjct: 277 QIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--IL 336

Query: 128 EKLFHLKECCYEPQKWLKHQYLSYYSS-NQLPWKLNISL-DDSMVCVHRVQITPSKVYFC 187
           +KL      CY+P  ++K Q  S        P      L + +++   R  +TPSK+Y  
Sbjct: 337 KKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLL 396

Query: 188 GPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKL----YSVDS---------------TI 247
           GPE   +N VV+ F + + +F RV+FV+E+ +KL     SV+S                +
Sbjct: 397 GPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRV 456

Query: 248 LSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWME----------- 307
           LS+L  GI +G K+FEFLAFS SQLR NS WMFAS         REWM            
Sbjct: 457 LSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKC 516

Query: 308 --------HESRKTLCVEEHEIEVIPDVEVKRKKIIYCFFDGIGKISKTLAKKVAEKCGL 348
                     SR+TL V   ++E IPD+EV      YCF DGIGKIS   AK+VA+KCGL
Sbjct: 517 AARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL 576

[Close]

BLAST of CcUC01G006750.1 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-29
Identity = 112/393 (28.50%), Postives = 180/393 (45.80%), Query Frame = 0


Query: 10  WIRDVDFTPSSCIGQSFALCLELSPRHHLPSFFQTLVGY---------KETYGPFILQKG 69
           WIR  DFT    IG+  +  + +SPR+   +  +T + Y         +  + P I  + 
Sbjct: 250 WIRTTDFTQVGAIGRCHSYRVLISPRYE--NKLRTALDYFRMRRVQEERVRWPPRIRNEP 309

Query: 70  SSFSSISNLVPIITPPQAFDISYKILFKINALVQNGYLPGPTIDDKFFRLVDSSEIHSDY 129
                +S+    I   +   IS++I+F +N+++  G      + ++FF L+ +     D 
Sbjct: 310 CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP--KDV 369

Query: 130 VKHALEKLFHLKECCYEPQKWLKHQYLSYYSSNQLPWKLNISLDDSMVCVHRVQITPSKV 189
              +L+ L   K   ++  K LK        + +L      S D S   + R+ ITP++ 
Sbjct: 370 NIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISE--IRRLVITPTRA 429

Query: 190 YFCGPEANLSNRVVRRFIDEIDNFFRVSFVDEELNKLYS--------------------- 249
           Y   PE  LSNRV+RR+    + F RV+F+DE +  + S                     
Sbjct: 430 YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 489

Query: 250 ---VDSTILSVLKNGIIIGDKKFEFLAFSTSQLRENSFWMFAS---------REWM---- 309
              V   + S+L +G  +  +K+ FLAFS +QLR+ S W FA          + WM    
Sbjct: 490 KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 549

Query: 310 -----EHESRKTLC---------VEEHEIEV-IPDVEVKRKKIIYCFFDGIGKISKTLAK 341
                +  +R  LC         V  HE++  +PD+E    +  Y F DGIG I+  LA 
Sbjct: 550 DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLAD 609

The following BLAST results are available for this feature:

BLAST of CcUC01G006750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875555.1	3.7e-161	75.38	probable RNA-dependent RNA polymerase 1 [Benincasa hispida]	[more]
XP_031741021.1	4.8e-161	74.87	probable RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
KAE8648600.1	4.8e-161	74.87	hypothetical protein Csa_007966 [Cucumis sativus]	[more]
AOW73471.1	1.1e-160	74.62	RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus]	[more]
ALM88235.1	2.7e-159	73.59	RNA-dependent RNA polymerase 1c [Cucumis sativus]	[more]

BLAST of CcUC01G006750.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	7.9e-98	50.39	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
O82504	5.7e-56	36.83	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q7XM31	8.6e-52	34.09	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0DXS3	7.5e-40	46.51	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SG02	1.1e-27	28.50	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of CcUC01G006750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRH3	5.2e-161	74.62	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=...	[more]
A0A1D8RK46	5.2e-161	74.62	RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=...	[more]
A0A0S1YCZ4	1.3e-159	73.59	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1	[more]
A0A5D3E365	2.2e-159	73.40	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TYE3	4.9e-159	73.33	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CcUC01G006750.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	5.6e-99	50.39	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	4.1e-57	36.83	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	8.0e-29	28.50	RNA-dependent RNA polymerase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 269..343 e-value: 3.2E-19 score: 69.0 coord: 175..260 e-value: 7.4E-21 score: 74.4
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 266..347 coord: 4..262
None	No IPR available	PANTHER	PTHR23079:SF38	RNA-DEPENDENT RNA POLYMERASE	coord: 4..262
None	No IPR available	PANTHER	PTHR23079:SF38	RNA-DEPENDENT RNA POLYMERASE	coord: 266..347

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC01G006750	CcUC01G006750	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G006750.1-exon	CcUC01G006750.1-exon-CicolChr01:7166420..7166428	exon
CcUC01G006750.1-exon	CcUC01G006750.1-exon-CicolChr01:7167075..7167733	exon
CcUC01G006750.1-exon	CcUC01G006750.1-exon-CicolChr01:7167780..7167901	exon
CcUC01G006750.1-exon	CcUC01G006750.1-exon-CicolChr01:7167992..7168245	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G006750.1-cds	CcUC01G006750.1-cds-CicolChr01:7166420..7166428	CDS
CcUC01G006750.1-cds	CcUC01G006750.1-cds-CicolChr01:7167075..7167733	CDS
CcUC01G006750.1-cds	CcUC01G006750.1-cds-CicolChr01:7167780..7167901	CDS
CcUC01G006750.1-cds	CcUC01G006750.1-cds-CicolChr01:7167992..7168245	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC01G006750.1	CcUC01G006750.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0031047	gene silencing by RNA
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003723	RNA binding