Carg28128-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ACACTTTTCTCACTCGCAGTCTTAAGCTCAGTTCTCCCTGGTTGCGATTTGTGAGAGAAATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTAGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGTATGAGCCAGCCCCCCTTTCTGAAATTTTGCTTTTACTGTTTGAATTATTTGTGCTTTTATGAATGTGGGGTTTTCTGAGCTGGAAAGTTTTTGCATCTTTGTGATTTGATGTTGTTCTTGGATTGTTCTTGAATGGAGATTTGTGCTGAAATGTTTATTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGTTTACTGCATTTTGATTCTTGTTTTCAATGGAGAGATATGATTCATTATTTGATCTATAAATTAGTTGTTATTTGGATCTGTAAATTAGTTCATAAGTATCATCACGTCTGTATAACAGTCAGGACCATTTAGCTTTGCATTTTTGATAATTCAGAAAGATGTGTAAAGTTAAGGCATGAAAATTGGAAACAGCACAAATTTACCACTTGGTTGTACTCCCTGGTGAAGTAAATTGAATATGCATTATGATGAGGGTTATGTATATACTTTAACAGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGTGAGAATTTCTTCTTCTTCCTTTTGTTTTTCCAGAACAATGAACAATAATGTGCTGTTATTTGTGGAACAAATACTCTGTTATGCTCTTACCTCCTATTTTTACCACGATACATGTTATTCTTAGCAAGTTTGCATTCAGTTATCAATATTTTTTTTACATGTTGCTAGGTTTTTGGTTCTGTAACCCGATGAAAACTCTAGCAAATTGGATGTAAGAACCCTTGTCCATATGCAAATCCCTAGATCACATATACTAAAGCTTCAAATCAAGATGCTTTAATTCCAAACGATATGGAACTCTTAGAAATTCGATCTACCAACCTTATTGAAAAATAAAACTTTTAGATTTAAAATATCCAAGAACCCCAAAATGATAAGGAATCAGCCCAGAAAAAGTAAAATCTAGATTACCTAGTTGATCAAATATCTTAAGGTAAGAAAACTTATTTGAGATTTCCAATCACTCCATAAGTAAAATTAATCGAGTCACATGCAACATAAACTACATAGATTGCAGAGAGACATAGCTCTAGGCTAAAAAGATGCACAAATTACTACTTTTTTCTAGCCTCTTTTACAAATACAATCATGAAACTCTTGGCCTTCCACGAGATGTTTCAATAGTTTAACCTTCAAAGTTTATGACCATAATTAACCATCATATGCATCTCAAAAGTAAATAAAAAATATTAAAACTGAAAATACACTAATAAAACACTAAAGATCCAAAAACTGTAGATTTCAATCATCCACCTAAGAATTTGTAACCATTTATAGAATTTGTAACCATCCTAGAATAAATGATGTCTCCCTTAAAATAGTTTGAATCCATTGTTGCTTTAGTTAAGTTTGACTTTACTTTAACGTGGCATAAAATGCAACTTAAGTTGAACTTTAACCAAACTTGACTTGTGTGTGTGGCATTGATATTGTTTAAGGTACTACAAGAAATGTGCTACCCTTTTTTCCTCTCTGCCATTTGAAATTGGAGGAGGAAGATAATTGATGTATTTAAAAGTTTCCATGGGTGTTAAACTCGGATTATGCCTCGATATGTGGGTTTTCTTTTCTACGGATCTGTTGATAGCATAGGTTAAATAAATGTAGCTGACCCAAGTTACGAAACTCATATTTTATGCTACCTATAAACTTCTGCTGATCATAGATTTATATGAACTTCTATTTCCAATAGGCCCTTTTTCTGCACCATTTTGTTTAGGCGATGAGCCACACCTCAACTACAGGCTTGTTTTTGCTCAAGACTAAAATCTTTTTGAACATCTTACAAATCTTCAGGGCAACCTTTATAGTAGCGGAAGCGTGTCTAATTGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTACTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCAAAGCGTTCGAGTTCAACGGTTGGGATGACAGGGTATGCCTAA ACACTTTTCTCACTCGCAGTCTTAAGCTCAGTTCTCCCTGGTTGCGATTTGTGAGAGAAATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTAGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGGCAACCTTTATAGTAGCGGAAGCGTGTCTAATTGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTACTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCAAAGCGTTCGAGTTCAACGGTTGGGATGACAGGGTATGCCTAA ATGGAAGGCAAAGGGTCGACTCTGGTTCATCTTCTAGTGGTGGTTTTGTGTTTAGTAGCTTTTGGGTTCTCCATTGCTGCCGAGAGACGAAGAAGTGTGGGGACTCTGTTTGAAGACAAGGAAAGGAACGCGACCTACTGTGTGTACGACTCGGATGTGGCAACTGGTTATGGTGTAGGAGGTTTCTTATTTCTTCTCTCTGGTGAATCATTGCTGATGGGTGTCACAAAGTGCATGTGTTTTGGGAGACCTTTAACCCCGGGAGGAAATCGGGCATGGGCTATTATTTACTTTTTATCCTCATGGGCAACCTTTATAGTAGCGGAAGCGTGTCTAATTGCGGGTGCAGCGAAAAATGCATACCATACAAAGTATCGAGGAATGATATATGCTCAAAACTTAGCATGTGAAACATTAAGGAAAGGAGTGTTCATTGCTGGGGCAGTGTTTGTGGTTGCAACCATGATTCTTAATGTGTATTACTACATGTACTTCACCAAGGCAACATCTTCTTCTCAAGCATCGCACAAAGCAAAGCGTTCGAGTTCAACGGTTGGGATGACAGGGTATGCCTAA MEGKGSTLVHLLVVVLCLVAFGFSIAAERRRSVGTLFEDKERNATYCVYDSDVATGYGVGGFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWAIIYFLSSWATFIVAEACLIAGAAKNAYHTKYRGMIYAQNLACETLRKGVFIAGAVFVVATMILNVYYYMYFTKATSSSQASHKAKRSSSTVGMTGYA Homology
BLAST of Carg28128-RA vs. NCBI nr
Match: KAG6601784.1 (hypothetical protein SDJN03_07017, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032499.1 hypothetical protein SDJN02_06548 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 378.3 bits (970), Expect = 4.1e-101 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of Carg28128-RA vs. NCBI nr
Match: XP_022952500.1 (uncharacterized protein LOC111455168 [Cucurbita moschata]) HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of Carg28128-RA vs. NCBI nr
Match: XP_022971781.1 (uncharacterized protein LOC111470459 [Cucurbita maxima]) HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of Carg28128-RA vs. NCBI nr
Match: XP_023538980.1 (uncharacterized protein LOC111799749 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 372.1 bits (954), Expect = 2.9e-99 Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of Carg28128-RA vs. NCBI nr
Match: XP_008465787.1 (PREDICTED: uncharacterized protein LOC103503388 [Cucumis melo]) HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93 Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0
BLAST of Carg28128-RA vs. ExPASy TrEMBL
Match: A0A6J1GLY4 (uncharacterized protein LOC111455168 OS=Cucurbita moschata OX=3662 GN=LOC111455168 PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 7.5e-101 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of Carg28128-RA vs. ExPASy TrEMBL
Match: A0A6J1I460 (uncharacterized protein LOC111470459 OS=Cucurbita maxima OX=3661 GN=LOC111470459 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 4.8e-100 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of Carg28128-RA vs. ExPASy TrEMBL
Match: A0A1S3CPP1 (uncharacterized protein LOC103503388 OS=Cucumis melo OX=3656 GN=LOC103503388 PE=4 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 6.8e-94 Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0
BLAST of Carg28128-RA vs. ExPASy TrEMBL
Match: A0A0A0KQ16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G373210 PE=4 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 4.4e-93 Identity = 178/191 (93.19%), Postives = 183/191 (95.81%), Query Frame = 0
BLAST of Carg28128-RA vs. ExPASy TrEMBL
Match: A0A6J1DLS4 (uncharacterized protein LOC111022343 OS=Momordica charantia OX=3673 GN=LOC111022343 PE=4 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 4.4e-93 Identity = 177/191 (92.67%), Postives = 181/191 (94.76%), Query Frame = 0
BLAST of Carg28128-RA vs. TAIR 10
Match: AT1G13380.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 278.5 bits (711), Expect = 4.1e-75 Identity = 140/190 (73.68%), Postives = 158/190 (83.16%), Query Frame = 0
BLAST of Carg28128-RA vs. TAIR 10
Match: AT4G27435.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43 Identity = 85/167 (50.90%), Postives = 115/167 (68.86%), Query Frame = 0
BLAST of Carg28128-RA vs. TAIR 10
Match: AT1G61065.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 162.5 bits (410), Expect = 3.3e-40 Identity = 82/178 (46.07%), Postives = 119/178 (66.85%), Query Frame = 0
BLAST of Carg28128-RA vs. TAIR 10
Match: AT3G15480.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39 Identity = 78/169 (46.15%), Postives = 116/169 (68.64%), Query Frame = 0
BLAST of Carg28128-RA vs. TAIR 10
Match: AT1G52910.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38 Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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