Carg27702-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27702-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 7153873 .. 7155626 (+)
Sequence length249
RNA-Seq ExpressionCarg27702-RA
SyntenyCarg27702-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGGTAAGTGTTTAAATCTTATTAGCATATTTTCAACAATTTCTAATCTATGGATAAAAGGTTTATCTTGCTCTTTTATTTGTTCCTCTTTGCATTCATTCCATTTGGCATACAATACAGAGACTATGCTTACCACATATGCTACCTCCTACCAAGATTAAACCGCCTTTACCTCATATGTTTAGCTCACGATTTTACATTGTTCTGATCATAAACAATGTGTTTACACCTAGTCTATGGTTTAAGAAGATTCCCGTATAATCAGGTTGATCAAAGCAAGTAATTTTGTTTATTACCAATACTATGGAGTCGTTCTAATTTTCAGCTAGCCAATAGACGCGAAGGAACCATTATACTGCGGTTGTCCGGATTTTGCTTGTCTATTAAGTACATCCAGTGTGTCATTCAACATCCATCAGCAACATCCGTCTATGAAAACATTTTCTTTAACTTGTAATATTTTTTTGAATGTGTATCACGTCCGACTTTGTGGTAGGATCACGAGGTCGCTTAACATTCGTAGTCAAAAGCACGTCTCTGGTAGTTCAATTGATCATTCAAAATGGTGTCTGCTTGAGACTAACATTTGCTTGGCTCATTAGAAGAGTTTTGTGATAATTTAGGCTAGTAGTTTGTGTCACTGTTTGCCAGCTTTAACAATACCATATCCACTCCGTATACAATGTCGTTCTTTCCTTGTTTGATTGCATTCTTGGATAACAGAAATTCGACCAGTTTTTTATGTTTCCGGCTGCTGCCGTGATAGAATGGAGCAACACATTATATATTCCAATATCTCTAATATAACATCCTATATTCTATGCACACACGAGCTTTCTCCGTGTCCGAAATGCGAGAATGCACTCTCAATCTTAACATCTATTCTTTTTCTTTCAATGTATTCCATATTAGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGGTGATTTTAACATTCTCGTATCAACAAGAGATGTGCGACATAATCTATCAAACATTTCATATCAATTAGTGAAGTCTTTTTAGTAATTATAATTTTGTATGCTGACTTTATACTCGTGAATGGTACAACTTTGAGCTTGGATTTAGACTCGTAAAGTACAATTCCTTTTGAAGCTTAGGGGTTTAAGATGCGCAAAGGTACAACCTTTTGACCGACTGAGAAGGTACGATCTTTTGAGCTTCATCGCGCGTGTAGCCACGGTACAAACCTTTTGAGCTAATAGGGGATTATCTCATGGTACAAAGACCAACAAGTAATAACCAATTGACCCAATTGTACTTGGCAAATTTCGAGAGAACGTGACAAACTAATGACTTTATGCCTCACATTATAGCATTAAATAGTATTTTAAGAGTATATTTAAATCAAACTCATTTTGATAGAGAGAATATTAATAATGGATTAAGCACAAATATTATCAAGAACATTGGCCTCAATTTTGTATTCCAATTTTAGCAATTGATGCTCATTGAAAAAGAGGAAAGAAACAAACGTTTGGCTGTAGAGTTGTTATTTTTTTTGGGTAATTCTTGAAGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

mRNA sequence

ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

Coding sequence (CDS)

ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

Protein sequence

MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKKGAQRREPNKQETRENKVPDMQT
Homology
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BLAST of Carg27702-RA vs. NCBI nr
Match: KAG7014177.1 (hypothetical protein SDJN02_24351, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK 60
          MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK
Sbjct: 1  MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK 60

Query: 61 GAQRREPNKQETRENKVPDMQT 83
          GAQRREPNKQETRENKVPDMQT
Sbjct: 61 GAQRREPNKQETRENKVPDMQT 82

The following BLAST results are available for this feature:
BLAST of Carg27702-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014177.11.4e-37100.00hypothetical protein SDJN02_24351, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27702-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27702-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27702-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..82

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg27702Carg27702gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27702-RA:1Carg27702-RA:1exon
Carg27702-RA:2Carg27702-RA:2exon
Carg27702-RA:3Carg27702-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27702-RA:cdsCarg27702-RA:cdsCDS
Carg27702-RA:cdsCarg27702-RA:cds_2CDS
Carg27702-RA:cdsCarg27702-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg27702-RACarg27702-RA-proteinpolypeptide